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The map label for this gene is traB

Identifier: 116332542

GI number: 116332542

Start: 124409

End: 125635

Strand: Direct

Name: traB

Synonym: LBJ_4108

Alternate gene names: NA

Gene position: 124409-125635 (Clockwise)

Preceding gene: 116332537

Following gene: 116332543

Centisome position: 41.5

GC content: 42.79

Gene sequence:

>1227_bases
ATGGTAAAAGCGGCACTTAAAAGTAAGATAAAATCCGAACACAAAAAAAACGTCTCCGGCTCGGAACCGATTGAAACGTT
TAAACTGGACAAGACGAACGTAACGATTCTCGGGACTGCACATATCAGTCAAAAGAGTATAGACGAAGTTCAAAAAATCA
TCCGGAAAGAAAAGCCGGACACGGTTTGCGTTGAACTTTGTAACTCCAGAATGCGTTCCCTTAAGGAAAACGAACACTGG
AAAAAATTAGATATATTCAAAGTTTTTAAAGAAAGAAAGATGTATCTTCTCCTTTCAAGCCTTATTCTCTCCGCGTTCCA
AAAAAAATTCGGTAAAGGTTCTATTCGCCCCGGGGACGAGATGAGAATGGCGATCGGCGAAGGTGAAAAAATCGGCGCTA
AAATCGTTCCAATCGATCGAGAAATTTCAACGACTCTCAAAAGAGCCTGGTGGAACATCGGAATTTTCAATCGTATGTTT
CTTCTTTCCGCGCTGTTGACTTCTCTTTTTGTGAAAGAGGACGTCTCCGAGGAAAAAATCGAAGAGATGAAATCGGAAGA
TGTTCTCAAGGATCTTTTTTCCCAACTTCCGAAACGCTACGAGTCTATTAAGAACGTAATCATCGACGAAAGGGATTTCT
ATCTCGCTCAAAAGATTCGAGACGCCTCAAAGGAAGGGAAGAAAATTTTTGCCGTAGTCGGCGCGGGTCACTTGCAAGGT
ATCATGAATCACGTCTGGGAAGAAAGGGATATTTCCAGTCTCGATCATTTACCTCGAAAAACGGCTCTGGATCGTTGGAA
AGGTCTTTTGATTCCGGGAATTTTTTTCGGTCTGATTTTAACCGTTTTCTATTTCGGAAGCAGACAACAAGGTCAGGAAT
TAGTTCTTCGTTGGATTTTAGTCAAAGGCGGGCTTGCCGCATTAGGCGCTATTATTTCTCTCGCGCACCCTCTATCCGTG
ATCCTTGCGTTTCTTGCGGCTCCCGTAGGTAATTTTAATCCGATTATCAAGCCGGGCTGGGTTGCCGCGTTATGCGAGTC
TTGGTTACGCAAACCACTTGTCGAGGACTTCGAAAAAATCGCCCAGGATTCGGAACACTGGAAAGGATATTGGAAAAATA
ACGTGATTCGTATCTTTCTTGTGTTTATGCTTCCTCAAATAGGGAGTAGTATCGGTACGTTTATTGTAACTGCAGACTTA
TTCCGAGTTCTTAAGGGATTGATGTGA

Upstream 100 bases:

>100_bases
TACTTTTTTGAGACAATTTGAAGAAGTAGATGCTTTTGAATCTAAAAACGGCAGAATTTCATTTTACTCTCGGATCTTAA
TTCCATATATTGCCTTTGGA

Downstream 100 bases:

>100_bases
TTTTCGAGCTTCGGAAATCTAAGACCATTTTCTTTTTGATTTTGGCTTGGTCCGGAGCTTTTTTCGCGATTCATTCCGAA
CCGTCCGCCGAATTCGAACC

Product: pheromone shutdown protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MVKAALKSKIKSEHKKNVSGSEPIETFKLDKTNVTILGTAHISQKSIDEVQKIIRKEKPDTVCVELCNSRMRSLKENEHW
KKLDIFKVFKERKMYLLLSSLILSAFQKKFGKGSIRPGDEMRMAIGEGEKIGAKIVPIDREISTTLKRAWWNIGIFNRMF
LLSALLTSLFVKEDVSEEKIEEMKSEDVLKDLFSQLPKRYESIKNVIIDERDFYLAQKIRDASKEGKKIFAVVGAGHLQG
IMNHVWEERDISSLDHLPRKTALDRWKGLLIPGIFFGLILTVFYFGSRQQGQELVLRWILVKGGLAALGAIISLAHPLSV
ILAFLAAPVGNFNPIIKPGWVAALCESWLRKPLVEDFEKIAQDSEHWKGYWKNNVIRIFLVFMLPQIGSSIGTFIVTADL
FRVLKGLM

Sequences:

>Translated_408_residues
MVKAALKSKIKSEHKKNVSGSEPIETFKLDKTNVTILGTAHISQKSIDEVQKIIRKEKPDTVCVELCNSRMRSLKENEHW
KKLDIFKVFKERKMYLLLSSLILSAFQKKFGKGSIRPGDEMRMAIGEGEKIGAKIVPIDREISTTLKRAWWNIGIFNRMF
LLSALLTSLFVKEDVSEEKIEEMKSEDVLKDLFSQLPKRYESIKNVIIDERDFYLAQKIRDASKEGKKIFAVVGAGHLQG
IMNHVWEERDISSLDHLPRKTALDRWKGLLIPGIFFGLILTVFYFGSRQQGQELVLRWILVKGGLAALGAIISLAHPLSV
ILAFLAAPVGNFNPIIKPGWVAALCESWLRKPLVEDFEKIAQDSEHWKGYWKNNVIRIFLVFMLPQIGSSIGTFIVTADL
FRVLKGLM
>Mature_408_residues
MVKAALKSKIKSEHKKNVSGSEPIETFKLDKTNVTILGTAHISQKSIDEVQKIIRKEKPDTVCVELCNSRMRSLKENEHW
KKLDIFKVFKERKMYLLLSSLILSAFQKKFGKGSIRPGDEMRMAIGEGEKIGAKIVPIDREISTTLKRAWWNIGIFNRMF
LLSALLTSLFVKEDVSEEKIEEMKSEDVLKDLFSQLPKRYESIKNVIIDERDFYLAQKIRDASKEGKKIFAVVGAGHLQG
IMNHVWEERDISSLDHLPRKTALDRWKGLLIPGIFFGLILTVFYFGSRQQGQELVLRWILVKGGLAALGAIISLAHPLSV
ILAFLAAPVGNFNPIIKPGWVAALCESWLRKPLVEDFEKIAQDSEHWKGYWKNNVIRIFLVFMLPQIGSSIGTFIVTADL
FRVLKGLM

Specific function: Unknown

COG id: COG1916

COG function: function code S; Uncharacterized homolog of PrgY (pheromone shutdown protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI33342278, Length=205, Percent_Identity=29.2682926829268, Blast_Score=82, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71988217, Length=260, Percent_Identity=27.3076923076923, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71988206, Length=260, Percent_Identity=27.3076923076923, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24646455, Length=207, Percent_Identity=31.4009661835749, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI21357445, Length=207, Percent_Identity=31.4009661835749, Blast_Score=79, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002816
- InterPro:   IPR005230 [H]

Pfam domain/function: PF01963 TraB [H]

EC number: NA

Molecular weight: Translated: 46439; Mature: 46439

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKAALKSKIKSEHKKNVSGSEPIETFKLDKTNVTILGTAHISQKSIDEVQKIIRKEKPD
CCHHHHHHHHHHHHHCCCCCCCCCHHEEECCCCEEEEEECHHHHHHHHHHHHHHHHCCCH
TVCVELCNSRMRSLKENEHWKKLDIFKVFKERKMYLLLSSLILSAFQKKFGKGSIRPGDE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
MRMAIGEGEKIGAKIVPIDREISTTLKRAWWNIGIFNRMFLLSALLTSLFVKEDVSEEKI
HHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
EEMKSEDVLKDLFSQLPKRYESIKNVIIDERDFYLAQKIRDASKEGKKIFAVVGAGHLQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
IMNHVWEERDISSLDHLPRKTALDRWKGLLIPGIFFGLILTVFYFGSRQQGQELVLRWIL
HHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VKGGLAALGAIISLAHPLSVILAFLAAPVGNFNPIIKPGWVAALCESWLRKPLVEDFEKI
HHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AQDSEHWKGYWKNNVIRIFLVFMLPQIGSSIGTFIVTADLFRVLKGLM
HCCHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVKAALKSKIKSEHKKNVSGSEPIETFKLDKTNVTILGTAHISQKSIDEVQKIIRKEKPD
CCHHHHHHHHHHHHHCCCCCCCCCHHEEECCCCEEEEEECHHHHHHHHHHHHHHHHCCCH
TVCVELCNSRMRSLKENEHWKKLDIFKVFKERKMYLLLSSLILSAFQKKFGKGSIRPGDE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
MRMAIGEGEKIGAKIVPIDREISTTLKRAWWNIGIFNRMFLLSALLTSLFVKEDVSEEKI
HHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
EEMKSEDVLKDLFSQLPKRYESIKNVIIDERDFYLAQKIRDASKEGKKIFAVVGAGHLQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
IMNHVWEERDISSLDHLPRKTALDRWKGLLIPGIFFGLILTVFYFGSRQQGQELVLRWIL
HHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VKGGLAALGAIISLAHPLSVILAFLAAPVGNFNPIIKPGWVAALCESWLRKPLVEDFEKI
HHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AQDSEHWKGYWKNNVIRIFLVFMLPQIGSSIGTFIVTADLFRVLKGLM
HCCHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]