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The map label for this gene is scpB [H]

Identifier: 116328728

GI number: 116328728

Start: 2461606

End: 2462139

Strand: Reverse

Name: scpB [H]

Synonym: LBL_2102

Alternate gene names: 116328728

Gene position: 2462139-2461606 (Counterclockwise)

Preceding gene: 116328729

Following gene: 116328727

Centisome position: 68.12

GC content: 42.32

Gene sequence:

>534_bases
TTGATCGAGGCCTTACTTTTTGTTTCCGGTGAACCCTTAAAATTGGCGAGTATCGCTAAGTCTGCAGGGATCGAAAAAAT
AGACGCCCGAGAAATTTTGGACGAACTCGTTTTAGATTATTCCGAAAAGAACGGAGGATTCTTACTTAAGGAAATTGCAG
GAGCGTATCAATTCGTAACTAATGAAAGTTTTGCGAAACTGCTCGGAAACGTCTTTAGGGAAAAAAGAAGAGAACAACTT
TCCAAATCCAGTTTAGATACACTCGCCATCATCGCTTACAAACAACCCATCACACTTCCGGAAATCGACGAAATTCGGGG
AGTTTCTTCCCGCGCTATGGTCACTTCACTGATCTCTAAAAAGTTAATCAAGCCGATCGGGAACAAGGAAGTTCCGGGAA
GACCGGCTTTGTACGGAACCACGAAGGAATTCTTGATTCATTTTGGATTGAATAAACTATCGGATCTTCCTGCGCCCGTG
GAAGTTAAAGAATTGAAATTCGAAAATCTGGACGATCTACTCGAACATGAGTGA

Upstream 100 bases:

>100_bases
AGCAGAGAATTCTCCGTGCGAAACAGTACAAGTTGTTCGGAGAAATCCGTCTATTTCTGAACGAGGGACATTGGAACGGG
ACAGAACAGCAATCAAAGGA

Downstream 100 bases:

>100_bases
TTTGGATCAACAACTCAGAATTTTTCGGGATCAGATTGATTCCCTCGATCGGGAGATCGTAAAAGCGATTCAGACTCGAG
CCGAATTTGCATCCAAGATC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MIEALLFVSGEPLKLASIAKSAGIEKIDAREILDELVLDYSEKNGGFLLKEIAGAYQFVTNESFAKLLGNVFREKRREQL
SKSSLDTLAIIAYKQPITLPEIDEIRGVSSRAMVTSLISKKLIKPIGNKEVPGRPALYGTTKEFLIHFGLNKLSDLPAPV
EVKELKFENLDDLLEHE

Sequences:

>Translated_177_residues
MIEALLFVSGEPLKLASIAKSAGIEKIDAREILDELVLDYSEKNGGFLLKEIAGAYQFVTNESFAKLLGNVFREKRREQL
SKSSLDTLAIIAYKQPITLPEIDEIRGVSSRAMVTSLISKKLIKPIGNKEVPGRPALYGTTKEFLIHFGLNKLSDLPAPV
EVKELKFENLDDLLEHE
>Mature_177_residues
MIEALLFVSGEPLKLASIAKSAGIEKIDAREILDELVLDYSEKNGGFLLKEIAGAYQFVTNESFAKLLGNVFREKRREQL
SKSSLDTLAIIAYKQPITLPEIDEIRGVSSRAMVTSLISKKLIKPIGNKEVPGRPALYGTTKEFLIHFGLNKLSDLPAPV
EVKELKFENLDDLLEHE

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 19699; Mature: 19699

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEALLFVSGEPLKLASIAKSAGIEKIDAREILDELVLDYSEKNGGFLLKEIAGAYQFVT
CCCEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC
NESFAKLLGNVFREKRREQLSKSSLDTLAIIAYKQPITLPEIDEIRGVSSRAMVTSLISK
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCHHHHHHHHHHHH
KLIKPIGNKEVPGRPALYGTTKEFLIHFGLNKLSDLPAPVEVKELKFENLDDLLEHE
HHHHHCCCCCCCCCCCCCCCHHHHHHHHCHHHHHCCCCCCHHHHHCCCCHHHHHCCC
>Mature Secondary Structure
MIEALLFVSGEPLKLASIAKSAGIEKIDAREILDELVLDYSEKNGGFLLKEIAGAYQFVT
CCCEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC
NESFAKLLGNVFREKRREQLSKSSLDTLAIIAYKQPITLPEIDEIRGVSSRAMVTSLISK
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCHHHHHHHHHHHH
KLIKPIGNKEVPGRPALYGTTKEFLIHFGLNKLSDLPAPVEVKELKFENLDDLLEHE
HHHHHCCCCCCCCCCCCCCCHHHHHHHHCHHHHHCCCCCCHHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]