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The map label for this gene is yiaN [C]

Identifier: 116249162

GI number: 116249162

Start: 540031

End: 541374

Strand: Reverse

Name: yiaN [C]

Synonym: pRL120498

Alternate gene names: 116249162

Gene position: 541374-540031 (Counterclockwise)

Preceding gene: 116249163

Following gene: 116249161

Centisome position: 62.23

GC content: 59.97

Gene sequence:

>1344_bases
ATGGCTCTGGGTGTCGGCTTCGGATACTATGCCTATTTCGATGCCGGCCGCATGTGGCGCGGCTATGACCGCGCGCTCGA
ATCCGGCGGCGATGCCGCTACACTGGCGCAGACCTGGATCGGCGGTTTCTTCAACAACCGGATCTTCGATCTGTTCGTCA
ACCAGACCTACTCGGTCATCCAGAACGACGTGCTCACGGCTATCCCGCTGTTCCTGTTCATGGGCTACATCGTCGAGCGA
GCCAACATCGTCGATCGGCTGTTCTCGACGCTATTCAACGTCACGCGCCGGGTGCCCGGCTCGATGGCGGTCGCCGCCCT
GGTCACCTGCACACTCTTTGCCACGGCAACCGGCATCGTCGGGGCCGTGGTGACGTTGATGGGACTGCTCGCCCTACCAG
CGATGCTGAAGGCAAAGTATGACGTGCGCTACGCGACGGGCGTGATCTGCGCGGGCGGCACGCTCGGGATCCTGATCCCG
CCTTCCATCCTGCTGATCGTCTATGCGGCCACCTCCGGGATCTCGGTTGTCCGAATGTATGCGGCGGCGCTCCTGCCCGG
CCTCGCCCTGGCGGGGTTTTATCTCATCTATGTCGTGGTGCGAGCAATCCTGCAGCCGCAACTGGCGCCGCGGCCAACGA
AAGAAGATGTGGGCGAGCACACGCCGGTCCAACTCGCCTGGATGATGCTTACATCCTTCGCGCCGCTCGCCTTTCTGATT
CTTGCGGTGCTGGGTGCCATTCTCTTTGGCCTGGCAACGCCGTCGGAAGCCGCCGCAATCGGCGCATTGGGGGGACTGGC
GCTTGCTGCGGCCTATCGGGCGCTGACCTGGCAGCGACTGAAGGAGTCGGTGTATCTGACGGCGCGAACGACCGCGATGG
TCTGCTGGTTGTTCGTCGGTTCGGCGACCTTCGCATCGGTATTCGCCTATCTCGGCGGTCAACAGTTCATCAGTGACTTC
GTGACCGGCCTGGACATGTCGCCGCTGATGTTCCTGATCCTGGCCCAGATCATCATCTTCATTCTCGGCTGGCCTCTGGA
ATGGACTGAAATCATCGTCATCTTCATCCCGATCTTCATTCCGCTGCTGCCGCATTTCGGGATCGATCCGCTGTTCTTCG
GTATCCTCGTGGCAATCAACCTGCAGACGGCCTTCCTATCACCACCCATGGCGATGTCGGCATACTACTTGAAGGGCGTC
TCGCCTCCGCATGTCAAACTGACAGACATCTTCCGCGGCATGATGCCGTATATGTTGATCGTCATTCTCTGCATGGTGTT
CATCTATCTGTTCCCGAGCATCGTCTACATGCTGCCGAATCTACTCTATGGAGGACAGAGATGA

Upstream 100 bases:

>100_bases
GGGATCGGGACGCTCAATGACGGATGCACATATTGCCGTCGGGATGCTCCTCATCCTGATCCTCACCATCTTCCTCGGCT
TCCCGGTGGCGTTCACCTTG

Downstream 100 bases:

>100_bases
CGCAGTGTCTGGCCCATTCCGAAAGGATAGACCGATGAACAGAAGCCGGTTTTTTGCAGTATTTGCATTCGTGACGCTTG
TCGCGTTCTGCGCGGTCATC

Product: putative TRAP transporter dctM related transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MALGVGFGYYAYFDAGRMWRGYDRALESGGDAATLAQTWIGGFFNNRIFDLFVNQTYSVIQNDVLTAIPLFLFMGYIVER
ANIVDRLFSTLFNVTRRVPGSMAVAALVTCTLFATATGIVGAVVTLMGLLALPAMLKAKYDVRYATGVICAGGTLGILIP
PSILLIVYAATSGISVVRMYAAALLPGLALAGFYLIYVVVRAILQPQLAPRPTKEDVGEHTPVQLAWMMLTSFAPLAFLI
LAVLGAILFGLATPSEAAAIGALGGLALAAAYRALTWQRLKESVYLTARTTAMVCWLFVGSATFASVFAYLGGQQFISDF
VTGLDMSPLMFLILAQIIIFILGWPLEWTEIIVIFIPIFIPLLPHFGIDPLFFGILVAINLQTAFLSPPMAMSAYYLKGV
SPPHVKLTDIFRGMMPYMLIVILCMVFIYLFPSIVYMLPNLLYGGQR

Sequences:

>Translated_447_residues
MALGVGFGYYAYFDAGRMWRGYDRALESGGDAATLAQTWIGGFFNNRIFDLFVNQTYSVIQNDVLTAIPLFLFMGYIVER
ANIVDRLFSTLFNVTRRVPGSMAVAALVTCTLFATATGIVGAVVTLMGLLALPAMLKAKYDVRYATGVICAGGTLGILIP
PSILLIVYAATSGISVVRMYAAALLPGLALAGFYLIYVVVRAILQPQLAPRPTKEDVGEHTPVQLAWMMLTSFAPLAFLI
LAVLGAILFGLATPSEAAAIGALGGLALAAAYRALTWQRLKESVYLTARTTAMVCWLFVGSATFASVFAYLGGQQFISDF
VTGLDMSPLMFLILAQIIIFILGWPLEWTEIIVIFIPIFIPLLPHFGIDPLFFGILVAINLQTAFLSPPMAMSAYYLKGV
SPPHVKLTDIFRGMMPYMLIVILCMVFIYLFPSIVYMLPNLLYGGQR
>Mature_446_residues
ALGVGFGYYAYFDAGRMWRGYDRALESGGDAATLAQTWIGGFFNNRIFDLFVNQTYSVIQNDVLTAIPLFLFMGYIVERA
NIVDRLFSTLFNVTRRVPGSMAVAALVTCTLFATATGIVGAVVTLMGLLALPAMLKAKYDVRYATGVICAGGTLGILIPP
SILLIVYAATSGISVVRMYAAALLPGLALAGFYLIYVVVRAILQPQLAPRPTKEDVGEHTPVQLAWMMLTSFAPLAFLIL
AVLGAILFGLATPSEAAAIGALGGLALAAAYRALTWQRLKESVYLTARTTAMVCWLFVGSATFASVFAYLGGQQFISDFV
TGLDMSPLMFLILAQIIIFILGWPLEWTEIIVIFIPIFIPLLPHFGIDPLFFGILVAINLQTAFLSPPMAMSAYYLKGVS
PPHVKLTDIFRGMMPYMLIVILCMVFIYLFPSIVYMLPNLLYGGQR

Specific function: Unknown

COG id: COG4664

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=358, Percent_Identity=27.6536312849162, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 48646; Mature: 48515

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALGVGFGYYAYFDAGRMWRGYDRALESGGDAATLAQTWIGGFFNNRIFDLFVNQTYSVI
CCEECCCHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
QNDVLTAIPLFLFMGYIVERANIVDRLFSTLFNVTRRVPGSMAVAALVTCTLFATATGIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GAVVTLMGLLALPAMLKAKYDVRYATGVICAGGTLGILIPPSILLIVYAATSGISVVRMY
HHHHHHHHHHHHHHHHHHHHCHHHHCCEEECCCCEEEECCHHHHHHHHHHHCCHHHHHHH
AAALLPGLALAGFYLIYVVVRAILQPQLAPRPTKEDVGEHTPVQLAWMMLTSFAPLAFLI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHH
LAVLGAILFGLATPSEAAAIGALGGLALAAAYRALTWQRLKESVYLTARTTAMVCWLFVG
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHH
SATFASVFAYLGGQQFISDFVTGLDMSPLMFLILAQIIIFILGWPLEWTEIIVIFIPIFI
HHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
PLLPHFGIDPLFFGILVAINLQTAFLSPPMAMSAYYLKGVSPPHVKLTDIFRGMMPYMLI
HHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHH
VILCMVFIYLFPSIVYMLPNLLYGGQR
HHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ALGVGFGYYAYFDAGRMWRGYDRALESGGDAATLAQTWIGGFFNNRIFDLFVNQTYSVI
CEECCCHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
QNDVLTAIPLFLFMGYIVERANIVDRLFSTLFNVTRRVPGSMAVAALVTCTLFATATGIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GAVVTLMGLLALPAMLKAKYDVRYATGVICAGGTLGILIPPSILLIVYAATSGISVVRMY
HHHHHHHHHHHHHHHHHHHHCHHHHCCEEECCCCEEEECCHHHHHHHHHHHCCHHHHHHH
AAALLPGLALAGFYLIYVVVRAILQPQLAPRPTKEDVGEHTPVQLAWMMLTSFAPLAFLI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHH
LAVLGAILFGLATPSEAAAIGALGGLALAAAYRALTWQRLKESVYLTARTTAMVCWLFVG
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHH
SATFASVFAYLGGQQFISDFVTGLDMSPLMFLILAQIIIFILGWPLEWTEIIVIFIPIFI
HHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
PLLPHFGIDPLFFGILVAINLQTAFLSPPMAMSAYYLKGVSPPHVKLTDIFRGMMPYMLI
HHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHH
VILCMVFIYLFPSIVYMLPNLLYGGQR
HHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]