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The map label for this gene is 116249032

Identifier: 116249032

GI number: 116249032

Start: 393394

End: 393804

Strand: Reverse

Name: 116249032

Synonym: pRL120363

Alternate gene names: NA

Gene position: 393804-393394 (Counterclockwise)

Preceding gene: 116249033

Following gene: 116249030

Centisome position: 45.26

GC content: 58.39

Gene sequence:

>411_bases
GTGATCACGCATCTTATCGACACCAATGCGGTGATCGCCCTGATCGGCAGGAAATCCGAAACACTGCTGAAGCGCGTGAT
CGATAGCGACGAGGGATCGATCGGGCTGTCGACCGTGGTGATGCACGAGCTTTATTATGGCGCCTATAAAAGCACGAAAA
TCTCCTACAATCTCGAAACCCTGCGGCTGTTCGTGGCGGATTTCTCAGTCGTCGGTTTCGAGCAGGAGGATGCGTTGGCC
GCTGGGGAGATCCGTGCCGCATTGGCGGCAAAGGGAACGCCGATCGGCCCCTATGATGTTCTGATCGCCGCTCAGGCCAG
GACCCGGGATCTGGTTCTCGTCACCAACAATGTCGGAGAATTCGGCCGCGTCGATGGTCTGCGTGTCGAGGACTGGACGG
TCGGGCGGTAG

Upstream 100 bases:

>100_bases
TGCATAGCGCCTTGGAGCGCGGCCTCAGCGACGATTTCATGGCGGAAGGGCGAGAGCAGCCGGAGGCGCAGGAGAGGCCT
GATCTTCAGAACCTGTTCAA

Downstream 100 bases:

>100_bases
GTCCGGTCTCCGATGAATGCCCGGGCGCAGCCGAAACTGCGCCCGGGCAAAATGCTGTCGATCAGACGAGATCGAAACGA
TCGGCGTTCATGACCTTGGT

Product: PIN domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MITHLIDTNAVIALIGRKSETLLKRVIDSDEGSIGLSTVVMHELYYGAYKSTKISYNLETLRLFVADFSVVGFEQEDALA
AGEIRAALAAKGTPIGPYDVLIAAQARTRDLVLVTNNVGEFGRVDGLRVEDWTVGR

Sequences:

>Translated_136_residues
MITHLIDTNAVIALIGRKSETLLKRVIDSDEGSIGLSTVVMHELYYGAYKSTKISYNLETLRLFVADFSVVGFEQEDALA
AGEIRAALAAKGTPIGPYDVLIAAQARTRDLVLVTNNVGEFGRVDGLRVEDWTVGR
>Mature_136_residues
MITHLIDTNAVIALIGRKSETLLKRVIDSDEGSIGLSTVVMHELYYGAYKSTKISYNLETLRLFVADFSVVGFEQEDALA
AGEIRAALAAKGTPIGPYDVLIAAQARTRDLVLVTNNVGEFGRVDGLRVEDWTVGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.nodosus virulence-associated protein C (vapC) [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716
- InterPro:   IPR006596 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 14814; Mature: 14814

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITHLIDTNAVIALIGRKSETLLKRVIDSDEGSIGLSTVVMHELYYGAYKSTKISYNLET
CEEEEECCCEEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEECHHH
LRLFVADFSVVGFEQEDALAAGEIRAALAAKGTPIGPYDVLIAAQARTRDLVLVTNNVGE
EEEEEEHHEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEECCCCC
FGRVDGLRVEDWTVGR
CCCCCCEEECCEECCC
>Mature Secondary Structure
MITHLIDTNAVIALIGRKSETLLKRVIDSDEGSIGLSTVVMHELYYGAYKSTKISYNLET
CEEEEECCCEEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEECHHH
LRLFVADFSVVGFEQEDALAAGEIRAALAAKGTPIGPYDVLIAAQARTRDLVLVTNNVGE
EEEEEEHHEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEECCCCC
FGRVDGLRVEDWTVGR
CCCCCCEEECCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]