| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is cbg-1 [H]
Identifier: 116249013
GI number: 116249013
Start: 368605
End: 371088
Strand: Reverse
Name: cbg-1 [H]
Synonym: pRL120344
Alternate gene names: 116249013
Gene position: 371088-368605 (Counterclockwise)
Preceding gene: 116249015
Following gene: 116249011
Centisome position: 42.65
GC content: 63.81
Gene sequence:
>2484_bases ATGATCGATTCCATTCTCGACAAGATGACGATTGAGGAGCAGGTCTCGTTGCTGTCCGGCGCCGATTTCTGGACGACGGT TCCCGTCGAGCGTCTTGATGTGCCGAAGATCAAGGTGACGGACGGGCCGAATGGGGCTCGCGGCGCGGGCTCGCTGGTCG GCGGCGTCAAGGCGACCTGTTTTCCTGTCGCCATCGCGCTCGGCGCCACCTGGAACCCCGATCTCGTCGAGCGTATGGGC GTGGCGCTTGCCCAACAGGCGAAGAGCAAGGGTGCCGCCGTGCTGCTCGCACCCACGGTGAATATCCATCGTTCCGGGCT CAACGGGCGAAATTTCGAATGTTATTCCGAAGATCCGATGCTGACGGCGGAACTCGCCGTCGCCTATATCAAGGGCGTGC AGAGCCAGGGGATCGCAGCGACGATCAAGCACTTCGCCGGCAACGAATCCGAGATCGAGCGGCAGACCATGTCTTCCGAT ATCGACGAGCGGACGCTGCGCGAAATCTACTTCCCGCCCTTCGAACAGGCTGTCCGGCGCGCCGGGGTGATGGCCGTCAT GTCCTCCTATAACCGCCTCAACGGCACCTATACGAGCGAACACGCGTGGCTACTGACCAAGGTGCTGCGCGAGGAATGGG GATTTGACGGGATCGTCATGTCCGACTGGTTCGGTTCGCATTCGACGGCCGAGACGATCAATGCCGGACTCGATCTCGAA ATGCCCGGCCCGGCGCGCGATCGCGGCGAGAAACTGGTTGCGGCCGTGCGCGAGGGCAGGGTCGAAGCGGCCACCGTGCG GGCGGCGGCGCGGCGAATCCTGCTGCTGCTCGAGCGGGTCGGCGCGTTCGAGAAGAAGCCAGATCTTACGGAGCAGGCGG TCGACCTGCCGGAAGACCGGGCGCTGATACGACGTCTCGGCGCGGAAGGCGCGGTCCTTTTGAAGAACGACGGCGTCCTG CCGCTTGCCAAGACGTCGCTCGACCGGATCGCCGTCATCGGACCCAACGCTGCGAGCGCGCGTGTCATGGGCGGCGGCAG TGCGCAGATCGCGGCGCATTATACGGTCAGCCCGCTCGAAGGGATTCGAGCGGCCCTTTCCAATGCCAACAGCGTCAGCC ACGCCGTTGGCTGCCGCCACAACCGTCTGATCGAGGTGGCCAAGGGAAAGATCACCGTCGAATATTTCAAGGGACGCGGT TGCCGGGGTACTCCCCTTCACGTCGAGACCGTCGACAAGGGCGAGTTCTTCTGGTTCGAGTTGCCGTCAGGCGAACTCGA CCCCGCCAATTTCTCGGCGCGGATGACGATGCAATTCGTGCCGGAGGAGAGCGGCGATCATGTCTTCGGCATGACCAATG CCGGACTGGCGCGGCTCTTCGTCGATGGCAGGCTCACGGTCGATGGTCATGACGGCTGGACGCGCGGCGAAAACTATTTC GGCACGGCCAATGATGAACAGCGCGGCACGGTAGCGCTCGATGCGGGCAAAGCCCATGCCGTCACCGTCGAGTATGACCC GCCGGTGGCGACCGGGGAGGGGATCAACCTCACGGCCATTCGCTTCGGCGTCGAAAAGCCTTTGGGCGAGGCCGATATCG AGGACGCCGTCGAGACGGCGCTGAATGCCGATGTGGCGCTTCTCTTCGTCGGCCGCGACGGCGAATGGGATACCGAGGGC TTGGACCTGCCCGACATGCGGCTTCCGGGCCGGCAGGAAGAGCTCATCGAGCGGGTTGCGGCCATCAACGCCAACACCGT GGTCGTGCTGCAGACCGGCGGTCCGGTGGAAATGCCCTGGCTCGGCAAGGTTCGCGCCGTGCTGCAGATCTGGTATCCCG GGCAGGAGATGGGCAATGCCGTCGCCGATGTCCTGTTCGGCGACGTCGAGCCCGGCGGACGCCTGCCGCAAACATTCCCG AAGGCGCTTGCCGACAATTCCGCCATGACGGGCGATCCGGCCGTCTATCCGGGTAAGGATGGGCATGTGCGCTATGCCGA AGGCGTGTTCGTCGGCTACCGTCACCACGATACACGCGCCGTCGAGCCGCTCTTCGCCTTCGGTTTCGGCCTTGGCTATA CACGCTTCAACTGGGGCGAGCCGCGGCTCTCAGCAAGCGAAATGGGTGCCGAAGGCGTGACGATCAGCGTCGATCTGACC AATATCGGCGACCGGGCCGGATCGGAACTGGTCCAGCTCTATGTGCGCTCGCCAAAATCCAGGGTGGAGCGGCCGGACAA GGAGCTGCGCGCCTTCGCAAAGCTTTCGCTGCCGCCCGGTGAGACCGGCACGGCCGAAATGAGGATCCTGCCGCGCGACC TCGCCTATTTTGACATCGAGGCCGGCGCCTTCCGCGCTGAACCGGGCGATTACCAACTGATCGTGGCGGCGAATGCCGCG GATATCAGGTTTGTCATCGATCTGCCGTCACCATTGGATTATTTGCTGCCTCCGTCGCACCAAGCGACCAGTCTCATCGC ATAA
Upstream 100 bases:
>100_bases CTGTGCGTAGAGAAGTTGGCGTCGCCACCGGGTGAATTGGCACGGGGCATACTCGGCCAGCATTTCGCAATGCCCGAATT CCATTGAAGGGGAGGTTTGC
Downstream 100 bases:
>100_bases ACGGCCGCCTTCACCACACCAATCCCATTGGATTGATGAGGTTCGCGCCCGATGAGGCAGGTCGAGCGCGACCATCGCTC CCGTGAAGGTCAAGCGGCCC
Product: putative beta-glucosidase protein
Products: NA
Alternate protein names: Beta-D-glucoside glucohydrolase; Cellobiase; Gentiobiase [H]
Number of amino acids: Translated: 827; Mature: 827
Protein sequence:
>827_residues MIDSILDKMTIEEQVSLLSGADFWTTVPVERLDVPKIKVTDGPNGARGAGSLVGGVKATCFPVAIALGATWNPDLVERMG VALAQQAKSKGAAVLLAPTVNIHRSGLNGRNFECYSEDPMLTAELAVAYIKGVQSQGIAATIKHFAGNESEIERQTMSSD IDERTLREIYFPPFEQAVRRAGVMAVMSSYNRLNGTYTSEHAWLLTKVLREEWGFDGIVMSDWFGSHSTAETINAGLDLE MPGPARDRGEKLVAAVREGRVEAATVRAAARRILLLLERVGAFEKKPDLTEQAVDLPEDRALIRRLGAEGAVLLKNDGVL PLAKTSLDRIAVIGPNAASARVMGGGSAQIAAHYTVSPLEGIRAALSNANSVSHAVGCRHNRLIEVAKGKITVEYFKGRG CRGTPLHVETVDKGEFFWFELPSGELDPANFSARMTMQFVPEESGDHVFGMTNAGLARLFVDGRLTVDGHDGWTRGENYF GTANDEQRGTVALDAGKAHAVTVEYDPPVATGEGINLTAIRFGVEKPLGEADIEDAVETALNADVALLFVGRDGEWDTEG LDLPDMRLPGRQEELIERVAAINANTVVVLQTGGPVEMPWLGKVRAVLQIWYPGQEMGNAVADVLFGDVEPGGRLPQTFP KALADNSAMTGDPAVYPGKDGHVRYAEGVFVGYRHHDTRAVEPLFAFGFGLGYTRFNWGEPRLSASEMGAEGVTISVDLT NIGDRAGSELVQLYVRSPKSRVERPDKELRAFAKLSLPPGETGTAEMRILPRDLAYFDIEAGAFRAEPGDYQLIVAANAA DIRFVIDLPSPLDYLLPPSHQATSLIA
Sequences:
>Translated_827_residues MIDSILDKMTIEEQVSLLSGADFWTTVPVERLDVPKIKVTDGPNGARGAGSLVGGVKATCFPVAIALGATWNPDLVERMG VALAQQAKSKGAAVLLAPTVNIHRSGLNGRNFECYSEDPMLTAELAVAYIKGVQSQGIAATIKHFAGNESEIERQTMSSD IDERTLREIYFPPFEQAVRRAGVMAVMSSYNRLNGTYTSEHAWLLTKVLREEWGFDGIVMSDWFGSHSTAETINAGLDLE MPGPARDRGEKLVAAVREGRVEAATVRAAARRILLLLERVGAFEKKPDLTEQAVDLPEDRALIRRLGAEGAVLLKNDGVL PLAKTSLDRIAVIGPNAASARVMGGGSAQIAAHYTVSPLEGIRAALSNANSVSHAVGCRHNRLIEVAKGKITVEYFKGRG CRGTPLHVETVDKGEFFWFELPSGELDPANFSARMTMQFVPEESGDHVFGMTNAGLARLFVDGRLTVDGHDGWTRGENYF GTANDEQRGTVALDAGKAHAVTVEYDPPVATGEGINLTAIRFGVEKPLGEADIEDAVETALNADVALLFVGRDGEWDTEG LDLPDMRLPGRQEELIERVAAINANTVVVLQTGGPVEMPWLGKVRAVLQIWYPGQEMGNAVADVLFGDVEPGGRLPQTFP KALADNSAMTGDPAVYPGKDGHVRYAEGVFVGYRHHDTRAVEPLFAFGFGLGYTRFNWGEPRLSASEMGAEGVTISVDLT NIGDRAGSELVQLYVRSPKSRVERPDKELRAFAKLSLPPGETGTAEMRILPRDLAYFDIEAGAFRAEPGDYQLIVAANAA DIRFVIDLPSPLDYLLPPSHQATSLIA >Mature_827_residues MIDSILDKMTIEEQVSLLSGADFWTTVPVERLDVPKIKVTDGPNGARGAGSLVGGVKATCFPVAIALGATWNPDLVERMG VALAQQAKSKGAAVLLAPTVNIHRSGLNGRNFECYSEDPMLTAELAVAYIKGVQSQGIAATIKHFAGNESEIERQTMSSD IDERTLREIYFPPFEQAVRRAGVMAVMSSYNRLNGTYTSEHAWLLTKVLREEWGFDGIVMSDWFGSHSTAETINAGLDLE MPGPARDRGEKLVAAVREGRVEAATVRAAARRILLLLERVGAFEKKPDLTEQAVDLPEDRALIRRLGAEGAVLLKNDGVL PLAKTSLDRIAVIGPNAASARVMGGGSAQIAAHYTVSPLEGIRAALSNANSVSHAVGCRHNRLIEVAKGKITVEYFKGRG CRGTPLHVETVDKGEFFWFELPSGELDPANFSARMTMQFVPEESGDHVFGMTNAGLARLFVDGRLTVDGHDGWTRGENYF GTANDEQRGTVALDAGKAHAVTVEYDPPVATGEGINLTAIRFGVEKPLGEADIEDAVETALNADVALLFVGRDGEWDTEG LDLPDMRLPGRQEELIERVAAINANTVVVLQTGGPVEMPWLGKVRAVLQIWYPGQEMGNAVADVLFGDVEPGGRLPQTFP KALADNSAMTGDPAVYPGKDGHVRYAEGVFVGYRHHDTRAVEPLFAFGFGLGYTRFNWGEPRLSASEMGAEGVTISVDLT NIGDRAGSELVQLYVRSPKSRVERPDKELRAFAKLSLPPGETGTAEMRILPRDLAYFDIEAGAFRAEPGDYQLIVAANAA DIRFVIDLPSPLDYLLPPSHQATSLIA
Specific function: Involved in modifying a vir-inducing plant signal molecule. Hydrolyzes coniferin but not cellobiose [H]
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788453, Length=278, Percent_Identity=33.8129496402878, Blast_Score=147, Evalue=3e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019800 - InterPro: IPR002772 - InterPro: IPR001764 - InterPro: IPR017853 - InterPro: IPR011658 [H]
Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]
EC number: =3.2.1.21 [H]
Molecular weight: Translated: 89298; Mature: 89298
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: PS00775 GLYCOSYL_HYDROL_F3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDSILDKMTIEEQVSLLSGADFWTTVPVERLDVPKIKVTDGPNGARGAGSLVGGVKATC CCHHHHHHHHHHHHHHHHCCCCCEEECCHHHCCCCEEEEECCCCCCCCCCHHHCCCHHHH FPVAIALGATWNPDLVERMGVALAQQAKSKGAAVLLAPTVNIHRSGLNGRNFECYSEDPM HHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCEEEECCCCC LTAELAVAYIKGVQSQGIAATIKHFAGNESEIERQTMSSDIDERTLREIYFPPFEQAVRR HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH AGVMAVMSSYNRLNGTYTSEHAWLLTKVLREEWGFDGIVMSDWFGSHSTAETINAGLDLE HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHCCCEEE MPGPARDRGEKLVAAVREGRVEAATVRAAARRILLLLERVGAFEKKPDLTEQAVDLPEDR CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHH ALIRRLGAEGAVLLKNDGVLPLAKTSLDRIAVIGPNAASARVMGGGSAQIAAHYTVSPLE HHHHHHCCCCEEEEECCCCCEEECCCCCEEEEECCCCCCEEEECCCCCEEEEEEECCHHH GIRAALSNANSVSHAVGCRHNRLIEVAKGKITVEYFKGRGCRGTPLHVETVDKGEFFWFE HHHHHHCCCCHHHHHHCCCCCCEEEEECCEEEEEEECCCCCCCCCEEEEEECCCCEEEEE LPSGELDPANFSARMTMQFVPEESGDHVFGMTNAGLARLFVDGRLTVDGHDGWTRGENYF CCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCC GTANDEQRGTVALDAGKAHAVTVEYDPPVATGEGINLTAIRFGVEKPLGEADIEDAVETA CCCCCCCCCEEEEECCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHH LNADVALLFVGRDGEWDTEGLDLPDMRLPGRQEELIERVAAINANTVVVLQTGGPVEMPW CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCH LGKVRAVLQIWYPGQEMGNAVADVLFGDVEPGGRLPQTFPKALADNSAMTGDPAVYPGKD HHHHEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC GHVRYAEGVFVGYRHHDTRAVEPLFAFGFGLGYTRFNWGEPRLSASEMGAEGVTISVDLT CCEEEECEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCEEEEEEEC NIGDRAGSELVQLYVRSPKSRVERPDKELRAFAKLSLPPGETGTAEMRILPRDLAYFDIE CCCCHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEE AGAFRAEPGDYQLIVAANAADIRFVIDLPSPLDYLLPPSHQATSLIA CCCEECCCCCEEEEEEECCCCEEEEEECCCCCHHCCCCCCCHHHCCC >Mature Secondary Structure MIDSILDKMTIEEQVSLLSGADFWTTVPVERLDVPKIKVTDGPNGARGAGSLVGGVKATC CCHHHHHHHHHHHHHHHHCCCCCEEECCHHHCCCCEEEEECCCCCCCCCCHHHCCCHHHH FPVAIALGATWNPDLVERMGVALAQQAKSKGAAVLLAPTVNIHRSGLNGRNFECYSEDPM HHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCEEEECCCCC LTAELAVAYIKGVQSQGIAATIKHFAGNESEIERQTMSSDIDERTLREIYFPPFEQAVRR HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH AGVMAVMSSYNRLNGTYTSEHAWLLTKVLREEWGFDGIVMSDWFGSHSTAETINAGLDLE HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHCCCEEE MPGPARDRGEKLVAAVREGRVEAATVRAAARRILLLLERVGAFEKKPDLTEQAVDLPEDR CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHH ALIRRLGAEGAVLLKNDGVLPLAKTSLDRIAVIGPNAASARVMGGGSAQIAAHYTVSPLE HHHHHHCCCCEEEEECCCCCEEECCCCCEEEEECCCCCCEEEECCCCCEEEEEEECCHHH GIRAALSNANSVSHAVGCRHNRLIEVAKGKITVEYFKGRGCRGTPLHVETVDKGEFFWFE HHHHHHCCCCHHHHHHCCCCCCEEEEECCEEEEEEECCCCCCCCCEEEEEECCCCEEEEE LPSGELDPANFSARMTMQFVPEESGDHVFGMTNAGLARLFVDGRLTVDGHDGWTRGENYF CCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCC GTANDEQRGTVALDAGKAHAVTVEYDPPVATGEGINLTAIRFGVEKPLGEADIEDAVETA CCCCCCCCCEEEEECCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHH LNADVALLFVGRDGEWDTEGLDLPDMRLPGRQEELIERVAAINANTVVVLQTGGPVEMPW CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCH LGKVRAVLQIWYPGQEMGNAVADVLFGDVEPGGRLPQTFPKALADNSAMTGDPAVYPGKD HHHHEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC GHVRYAEGVFVGYRHHDTRAVEPLFAFGFGLGYTRFNWGEPRLSASEMGAEGVTISVDLT CCEEEECEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCEEEEEEEC NIGDRAGSELVQLYVRSPKSRVERPDKELRAFAKLSLPPGETGTAEMRILPRDLAYFDIE CCCCHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEE AGAFRAEPGDYQLIVAANAADIRFVIDLPSPLDYLLPPSHQATSLIA CCCEECCCCCEEEEEEECCCCEEEEEECCCCCHHCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1537792 [H]