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The map label for this gene is hspD [H]

Identifier: 116249011

GI number: 116249011

Start: 367438

End: 367914

Strand: Reverse

Name: hspD [H]

Synonym: pRL120342

Alternate gene names: 116249011

Gene position: 367914-367438 (Counterclockwise)

Preceding gene: 116249013

Following gene: 116249001

Centisome position: 42.29

GC content: 58.7

Gene sequence:

>477_bases
ATGGCTATGAGAAACGAACTTGACTTCGCACCCCTTTACCGGTCCAGCATCGGCTTCGACCGGGTCTTCAATCTCCTGAA
CAATGCGCAACGCCTGCAGGCGATCGATAGCTGGCCGCCTTATGACATCGTCAAGATCGGCGAAGACGACTACCGAATCC
AGATGGCGGTTGCCGGCTTCGCCGAGGCCGACCTCGACATCACGCAGGAGCGGAACGTTCTCGTGGTGAAGGGTCAAAGG
ACCGAAGAAAAGGACGGCGAGTACCTGCACCGCGGCATCGCCGGGCGCGCATTCGAGCGTCGCTTCGAGCTCGCCGACCA
CGTGAGGGTCGAGAATGCTTCTTTGACCAACGGTATTCTCTCGGTCGCTTTGAAGCGTGAAGTGCCGGAAGCCATGAAGC
CGCGCAAGATCGCGATCGGAGAAGGCTCCTTTCAGCAAACGCCTCTTCAGATCGAAGCCGAGCGTCAGGTGGCTTAA

Upstream 100 bases:

>100_bases
CGCGAAACCAGATCATTTTCGTCGGCAGCGCAAAGCGGGCCGATCAGAGCAGAGGCGCAGTTTCCAATGCGTCTCCAACC
CATGTTGCTTTACGGAGGAT

Downstream 100 bases:

>100_bases
GGAGAGCTTCTCGATGAAGTCCCGGACAAAGCCGTTTACCGTTGAGGTCAGGAAACGTCGCGCGAGCAGCGCGAAGGATG
AAGGAAAGCGCGCGCGCTCG

Product: putative small heat shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MAMRNELDFAPLYRSSIGFDRVFNLLNNAQRLQAIDSWPPYDIVKIGEDDYRIQMAVAGFAEADLDITQERNVLVVKGQR
TEEKDGEYLHRGIAGRAFERRFELADHVRVENASLTNGILSVALKREVPEAMKPRKIAIGEGSFQQTPLQIEAERQVA

Sequences:

>Translated_158_residues
MAMRNELDFAPLYRSSIGFDRVFNLLNNAQRLQAIDSWPPYDIVKIGEDDYRIQMAVAGFAEADLDITQERNVLVVKGQR
TEEKDGEYLHRGIAGRAFERRFELADHVRVENASLTNGILSVALKREVPEAMKPRKIAIGEGSFQQTPLQIEAERQVA
>Mature_157_residues
AMRNELDFAPLYRSSIGFDRVFNLLNNAQRLQAIDSWPPYDIVKIGEDDYRIQMAVAGFAEADLDITQERNVLVVKGQRT
EEKDGEYLHRGIAGRAFERRFELADHVRVENASLTNGILSVALKREVPEAMKPRKIAIGEGSFQQTPLQIEAERQVA

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

Organism=Escherichia coli, GI1790122, Length=138, Percent_Identity=52.8985507246377, Blast_Score=144, Evalue=3e-36,
Organism=Escherichia coli, GI87082316, Length=142, Percent_Identity=42.9577464788732, Blast_Score=103, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 17933; Mature: 17801

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMRNELDFAPLYRSSIGFDRVFNLLNNAQRLQAIDSWPPYDIVKIGEDDYRIQMAVAGF
CCCCCCCCCCHHHHHCCCHHHHHHHHCCHHHHHHHCCCCCCCEEEECCCCEEEEEEECCC
AEADLDITQERNVLVVKGQRTEEKDGEYLHRGIAGRAFERRFELADHVRVENASLTNGIL
CCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHH
SVALKREVPEAMKPRKIAIGEGSFQQTPLQIEAERQVA
HHHHHHHCHHHHCCCEEEECCCCCCCCCEEEECCCCCC
>Mature Secondary Structure 
AMRNELDFAPLYRSSIGFDRVFNLLNNAQRLQAIDSWPPYDIVKIGEDDYRIQMAVAGF
CCCCCCCCCHHHHHCCCHHHHHHHHCCHHHHHHHCCCCCCCEEEECCCCEEEEEEECCC
AEADLDITQERNVLVVKGQRTEEKDGEYLHRGIAGRAFERRFELADHVRVENASLTNGIL
CCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHH
SVALKREVPEAMKPRKIAIGEGSFQQTPLQIEAERQVA
HHHHHHHCHHHHCCCEEEECCCCCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]