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The map label for this gene is rbsC [H]

Identifier: 116248864

GI number: 116248864

Start: 200609

End: 201595

Strand: Direct

Name: rbsC [H]

Synonym: pRL120194

Alternate gene names: 116248864

Gene position: 200609-201595 (Clockwise)

Preceding gene: 116248863

Following gene: 116248865

Centisome position: 23.06

GC content: 63.83

Gene sequence:

>987_bases
ATGAACGCGCTCGCCGCCCGCTTCAACGCCATCTTCGGGGCCGACATGGCCGGTCCCCTCGCCGCGCTGGCGGCCGTGCT
TGTCGTCTTCGGTTTCGCCTCGCCGCATTTTCTAACGGGCGCGACCTTCGGATCGGTCGCCTTTCAGCTTCCCGAGCTGG
GCGTCCTGACGCTTGCCATGCTGATGCCGATCCTCACCGGCGGCCTCAACCTCGCGATCACCTTCACCGCCAACATCGCC
GGCCTGACCCTCGCCTGGACGCTGCAGGCCAATGGCGGCATCGAAGCCGGTCCGGGCGCCTTCCTGCTCGGCTCGGCTTT
GGCGCTTGCCGTCGGCGCGGCAAGCGGCCTGGTCATGGGCTTGGTCATCGCCTTTACCCGCGCCCATCCGATTCTCGTTT
CTCTGTCGATGATGATCTTCCTACGCGGCCTCGGCGAGTTCCTGACACGCGGCGGCGATATCTCGGGCTTCCCCGCCTTC
ATCGCTCCGATCGGCCACGGCAGCATCCTCGGCATCCCCGTCCCCTTGCTGATCCTGATCGCCTGTGTAATCGCCAGCCA
TATCCTGCTCTCGCGCTCCAAGCTCGGCTTTTCCACCTACATGATCGGCTCCAATATCGAGTCTGCCCGCTATTCCGGCA
TCAACACCCGCAAGGTCCTGGTGCTGGTTTACATGCTCTCCGGCGTGATGGCTGCGGTTGCCGGCATCATCATGCTTGCG
CGTTTCAATTCGGTGCGCGTCGGCCACGGCGAATCCTATCTGCTGATCACCGTGCTCGCCTGCTTCCTCGGCGGCATCAA
TCCCTTCGGCGGCTTCGGCCGCGTCCTGCCCGTCTTCGTGGCGCTCATCGTGCTGCAGCTTCTCTCTTCGGGGCTCAACC
TGCTCGGCGCCAACCAGCATCTCACCACTGCCGTCTGGGGCATCCTGCTCATCGTCGTGATGGTGCTGCGGTGGCTGTCG
GCCAAGTTCATCAAAATCGTGAAATAG

Upstream 100 bases:

>100_bases
TGGCGATCACGCTGTCGAGCGCCCGCATCGGCAATCTGGTGCCGGTGTTTGCGACCCGCAAATCGACCGGCGGCAGGCCT
GCAGACAGGGGAGAGAGCTG

Downstream 100 bases:

>100_bases
GAGATACGACCATGGAAGGTTTCGGCGTTCACACCAGCATGTGGACCATGAACTGGGACCGCGCAGGCGCCGAGAAGGCC
ATTGCCGGAGCCGTGCACTA

Product: putative permease component of ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MNALAARFNAIFGADMAGPLAALAAVLVVFGFASPHFLTGATFGSVAFQLPELGVLTLAMLMPILTGGLNLAITFTANIA
GLTLAWTLQANGGIEAGPGAFLLGSALALAVGAASGLVMGLVIAFTRAHPILVSLSMMIFLRGLGEFLTRGGDISGFPAF
IAPIGHGSILGIPVPLLILIACVIASHILLSRSKLGFSTYMIGSNIESARYSGINTRKVLVLVYMLSGVMAAVAGIIMLA
RFNSVRVGHGESYLLITVLACFLGGINPFGGFGRVLPVFVALIVLQLLSSGLNLLGANQHLTTAVWGILLIVVMVLRWLS
AKFIKIVK

Sequences:

>Translated_328_residues
MNALAARFNAIFGADMAGPLAALAAVLVVFGFASPHFLTGATFGSVAFQLPELGVLTLAMLMPILTGGLNLAITFTANIA
GLTLAWTLQANGGIEAGPGAFLLGSALALAVGAASGLVMGLVIAFTRAHPILVSLSMMIFLRGLGEFLTRGGDISGFPAF
IAPIGHGSILGIPVPLLILIACVIASHILLSRSKLGFSTYMIGSNIESARYSGINTRKVLVLVYMLSGVMAAVAGIIMLA
RFNSVRVGHGESYLLITVLACFLGGINPFGGFGRVLPVFVALIVLQLLSSGLNLLGANQHLTTAVWGILLIVVMVLRWLS
AKFIKIVK
>Mature_328_residues
MNALAARFNAIFGADMAGPLAALAAVLVVFGFASPHFLTGATFGSVAFQLPELGVLTLAMLMPILTGGLNLAITFTANIA
GLTLAWTLQANGGIEAGPGAFLLGSALALAVGAASGLVMGLVIAFTRAHPILVSLSMMIFLRGLGEFLTRGGDISGFPAF
IAPIGHGSILGIPVPLLILIACVIASHILLSRSKLGFSTYMIGSNIESARYSGINTRKVLVLVYMLSGVMAAVAGIIMLA
RFNSVRVGHGESYLLITVLACFLGGINPFGGFGRVLPVFVALIVLQLLSSGLNLLGANQHLTTAVWGILLIVVMVLRWLS
AKFIKIVK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=286, Percent_Identity=32.1678321678322, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI145693152, Length=313, Percent_Identity=26.1980830670927, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1787794, Length=317, Percent_Identity=27.4447949526814, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1790524, Length=316, Percent_Identity=26.8987341772152, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788896, Length=304, Percent_Identity=27.9605263157895, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693214, Length=306, Percent_Identity=28.7581699346405, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87082395, Length=279, Percent_Identity=27.9569892473118, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788471, Length=162, Percent_Identity=31.4814814814815, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1789992, Length=105, Percent_Identity=31.4285714285714, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33986; Mature: 33986

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALAARFNAIFGADMAGPLAALAAVLVVFGFASPHFLTGATFGSVAFQLPELGVLTLAM
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
LMPILTGGLNLAITFTANIAGLTLAWTLQANGGIEAGPGAFLLGSALALAVGAASGLVMG
HHHHHHCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LVIAFTRAHPILVSLSMMIFLRGLGEFLTRGGDISGFPAFIAPIGHGSILGIPVPLLILI
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEECCCHHHHHHH
ACVIASHILLSRSKLGFSTYMIGSNIESARYSGINTRKVLVLVYMLSGVMAAVAGIIMLA
HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RFNSVRVGHGESYLLITVLACFLGGINPFGGFGRVLPVFVALIVLQLLSSGLNLLGANQH
HHCCEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCH
LTTAVWGILLIVVMVLRWLSAKFIKIVK
HHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNALAARFNAIFGADMAGPLAALAAVLVVFGFASPHFLTGATFGSVAFQLPELGVLTLAM
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
LMPILTGGLNLAITFTANIAGLTLAWTLQANGGIEAGPGAFLLGSALALAVGAASGLVMG
HHHHHHCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LVIAFTRAHPILVSLSMMIFLRGLGEFLTRGGDISGFPAFIAPIGHGSILGIPVPLLILI
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEECCCHHHHHHH
ACVIASHILLSRSKLGFSTYMIGSNIESARYSGINTRKVLVLVYMLSGVMAAVAGIIMLA
HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RFNSVRVGHGESYLLITVLACFLGGINPFGGFGRVLPVFVALIVLQLLSSGLNLLGANQH
HHCCEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCH
LTTAVWGILLIVVMVLRWLSAKFIKIVK
HHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]