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The map label for this gene is ycjR [C]

Identifier: 116248865

GI number: 116248865

Start: 201607

End: 202455

Strand: Direct

Name: ycjR [C]

Synonym: pRL120195

Alternate gene names: 116248865

Gene position: 201607-202455 (Clockwise)

Preceding gene: 116248864

Following gene: 116248866

Centisome position: 23.17

GC content: 61.25

Gene sequence:

>849_bases
ATGGAAGGTTTCGGCGTTCACACCAGCATGTGGACCATGAACTGGGACCGCGCAGGCGCCGAGAAGGCCATTGCCGGAGC
CGTGCACTACAAGATGGATTTCATCGAGATCGCGCTGCTCAACGCGCCTGCCGTCGATGCCAAACACACCTGCGACCTGC
TTGAAAAGAACAAGCTGCGCGCCGTCTGCTCGCTCGGCCTGCCGGAGCATGCCTGGGCCTCCGTCCGCCCGGATGCAGCG
ATCGAGCACCTGAGGGTCGCGATCGAAAAGACCGCAGAAATGAATGCCGAGGCCCTGTCTGGCGTCATCTTTGGCGGCAT
CGGCGAGCGCACCGGCGTGCCACCGACGCAGGGCGAATACGACAACATCGCCAAGGTGCTCGACGTCGCGGCAAAGCATG
CGAAGAAGTATGGCATCCAACTCGGCGTCGAGGCGGTGAACCGCTATGAGAACCACCTGATCAATTCGGCGCAGCAGGCC
GTCGACATGGTGGAGCGTGTCGGCGCCGACAACATCTTCGTTCACCTCGACACCTACCACATGAATATCGAGGAGAAGGG
TGCGGCAAACGGCATCCTGATCGCCCGCGATCACCTGAAGTACATCCATCTTTCGGAAAGCGACCGCGGCACGCCGGGCT
ACGGCAACATTCCATGGGATGCGATCTATGCCGCGCTCGCCGCAATCGGCTTCAAGGGCGGACTTGCGATGGAAAGCTTC
ATCAACATGCCGCCCGAGGTCGCCTATGGCTTGGCCGTCTGGCGCCCCGTCGCACGCGATATGGAAGAGGTCATGGACAA
GGGCCTGCCGTTCCTGCGCAACAAGGCGGAACAATACGGTCTCATCTGA

Upstream 100 bases:

>100_bases
ATCTCACCACTGCCGTCTGGGGCATCCTGCTCATCGTCGTGATGGTGCTGCGGTGGCTGTCGGCCAAGTTCATCAAAATC
GTGAAATAGGAGATACGACC

Downstream 100 bases:

>100_bases
CCCGGTTTGCCGGATATTCAGGATTCAGCGGCCGCACGGGTGTCTGGCTGAAGAGTTCTCGCCATGGCCGGCAAGGGGCA
TGACGCCCCATCTCTTCAGC

Product: putative-epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MEGFGVHTSMWTMNWDRAGAEKAIAGAVHYKMDFIEIALLNAPAVDAKHTCDLLEKNKLRAVCSLGLPEHAWASVRPDAA
IEHLRVAIEKTAEMNAEALSGVIFGGIGERTGVPPTQGEYDNIAKVLDVAAKHAKKYGIQLGVEAVNRYENHLINSAQQA
VDMVERVGADNIFVHLDTYHMNIEEKGAANGILIARDHLKYIHLSESDRGTPGYGNIPWDAIYAALAAIGFKGGLAMESF
INMPPEVAYGLAVWRPVARDMEEVMDKGLPFLRNKAEQYGLI

Sequences:

>Translated_282_residues
MEGFGVHTSMWTMNWDRAGAEKAIAGAVHYKMDFIEIALLNAPAVDAKHTCDLLEKNKLRAVCSLGLPEHAWASVRPDAA
IEHLRVAIEKTAEMNAEALSGVIFGGIGERTGVPPTQGEYDNIAKVLDVAAKHAKKYGIQLGVEAVNRYENHLINSAQQA
VDMVERVGADNIFVHLDTYHMNIEEKGAANGILIARDHLKYIHLSESDRGTPGYGNIPWDAIYAALAAIGFKGGLAMESF
INMPPEVAYGLAVWRPVARDMEEVMDKGLPFLRNKAEQYGLI
>Mature_282_residues
MEGFGVHTSMWTMNWDRAGAEKAIAGAVHYKMDFIEIALLNAPAVDAKHTCDLLEKNKLRAVCSLGLPEHAWASVRPDAA
IEHLRVAIEKTAEMNAEALSGVIFGGIGERTGVPPTQGEYDNIAKVLDVAAKHAKKYGIQLGVEAVNRYENHLINSAQQA
VDMVERVGADNIFVHLDTYHMNIEEKGAANGILIARDHLKYIHLSESDRGTPGYGNIPWDAIYAALAAIGFKGGLAMESF
INMPPEVAYGLAVWRPVARDMEEVMDKGLPFLRNKAEQYGLI

Specific function: Unknown

COG id: COG1082

COG function: function code G; Sugar phosphate isomerases/epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Escherichia coli, GI87081874, Length=133, Percent_Identity=29.3233082706767, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 30879; Mature: 30879

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGFGVHTSMWTMNWDRAGAEKAIAGAVHYKMDFIEIALLNAPAVDAKHTCDLLEKNKLR
CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHH
AVCSLGLPEHAWASVRPDAAIEHLRVAIEKTAEMNAEALSGVIFGGIGERTGVPPTQGEY
HHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCH
DNIAKVLDVAAKHAKKYGIQLGVEAVNRYENHLINSAQQAVDMVERVGADNIFVHLDTYH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE
MNIEEKGAANGILIARDHLKYIHLSESDRGTPGYGNIPWDAIYAALAAIGFKGGLAMESF
ECCHHCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
INMPPEVAYGLAVWRPVARDMEEVMDKGLPFLRNKAEQYGLI
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MEGFGVHTSMWTMNWDRAGAEKAIAGAVHYKMDFIEIALLNAPAVDAKHTCDLLEKNKLR
CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHH
AVCSLGLPEHAWASVRPDAAIEHLRVAIEKTAEMNAEALSGVIFGGIGERTGVPPTQGEY
HHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCH
DNIAKVLDVAAKHAKKYGIQLGVEAVNRYENHLINSAQQAVDMVERVGADNIFVHLDTYH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE
MNIEEKGAANGILIARDHLKYIHLSESDRGTPGYGNIPWDAIYAALAAIGFKGGLAMESF
ECCHHCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
INMPPEVAYGLAVWRPVARDMEEVMDKGLPFLRNKAEQYGLI
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA