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The map label for this gene is rbsC [H]

Identifier: 116248863

GI number: 116248863

Start: 199581

End: 200609

Strand: Direct

Name: rbsC [H]

Synonym: pRL120193

Alternate gene names: 116248863

Gene position: 199581-200609 (Clockwise)

Preceding gene: 116248862

Following gene: 116248864

Centisome position: 22.94

GC content: 62.0

Gene sequence:

>1029_bases
ATGCGTAAGCTGTTCCTGTCCCATACGACTGAATTCGTGCTGTTTGCGGTCATCATCGCGATGAGTATCGTCCTCGCTTT
TGCGACCGACCGTTTCTTCACGCTCGGCAATGGGTTCGACCTGCTCAATATCAGCGCGGTCAACATCATCTTCGCCGTCG
GCCTGCTCGTGGTGCTGATATCAGGCGGGATCGACATCTCCTTCGCCGTCGCCGCCTCGATCGTACAATATGTCACCGCA
CTTGCGCTCGAGCGCATCGGCGGCGGCGGATGGCTATCCGGTCTCCTGATTGCGGGCGGTATCGGCATCGTGCTCGGCGT
GATCAACGCCTTCCTGATCCACCGCTTCCGCATCATCTCGATCGTCGCGACCATCGCGACCTTCAACGTCTATTTCGGCC
TGCTGATGTTCTTCACCAAGGGCGTGTCGATCTACGATCTGCCCGACTGGCTGACGAGCCGCGTCATAATCTACGAGCGC
GAAATGGCCGATGGGAGCTGGGCCGAGATCACCTTGCCGGTTGTCGTCATGGTCGTCTGCACGCTCGCCACCTGGCTCTT
CATTACTCGCACGACGACCGGCCGGCAGCTCTATGCCTTCGGCGACAATCCGGAAGGCGCGCGCCGCTTCGGCATCAATA
TCGGCGCCATGCAATTCATCGCCTTCGGCTGGCTTGGGTTGATGGCAGGCATCGCCGGGCTCATGCAGGCGCATTATGCG
CAGGAGGTCGTGCCGAACGCACTTTATGGCCGCGAGCTCGATGTCCTGGCTGCCGTGGTGCTCGGCGGCGCGCGGCTGGG
CGGCGGCAAGGGTTCGGTGCTCGGTTGCGTGCTGGGTGTGCTGCTCGTCTCGATCACCCAGAACGGCCTCAACCTGATGG
GCGTCTCGCCCTTCGCCTTCAAGATGATCGTCGGCGCGATCATCCTCGTGGCGATCACGCTGTCGAGCGCCCGCATCGGC
AATCTGGTGCCGGTGTTTGCGACCCGCAAATCGACCGGCGGCAGGCCTGCAGACAGGGGAGAGAGCTGA

Upstream 100 bases:

>100_bases
TATTTCAACGCCGATCGGATCATCCATATGGAGAAGGGCCGGATCGCCGGCTGGCACGATCCGCGCGCGACCACACTGAA
GGACCTGGAGGCGGCGGTCT

Downstream 100 bases:

>100_bases
TGAACGCGCTCGCCGCCCGCTTCAACGCCATCTTCGGGGCCGACATGGCCGGTCCCCTCGCCGCGCTGGCGGCCGTGCTT
GTCGTCTTCGGTTTCGCCTC

Product: putative permease component of ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MRKLFLSHTTEFVLFAVIIAMSIVLAFATDRFFTLGNGFDLLNISAVNIIFAVGLLVVLISGGIDISFAVAASIVQYVTA
LALERIGGGGWLSGLLIAGGIGIVLGVINAFLIHRFRIISIVATIATFNVYFGLLMFFTKGVSIYDLPDWLTSRVIIYER
EMADGSWAEITLPVVVMVVCTLATWLFITRTTTGRQLYAFGDNPEGARRFGINIGAMQFIAFGWLGLMAGIAGLMQAHYA
QEVVPNALYGRELDVLAAVVLGGARLGGGKGSVLGCVLGVLLVSITQNGLNLMGVSPFAFKMIVGAIILVAITLSSARIG
NLVPVFATRKSTGGRPADRGES

Sequences:

>Translated_342_residues
MRKLFLSHTTEFVLFAVIIAMSIVLAFATDRFFTLGNGFDLLNISAVNIIFAVGLLVVLISGGIDISFAVAASIVQYVTA
LALERIGGGGWLSGLLIAGGIGIVLGVINAFLIHRFRIISIVATIATFNVYFGLLMFFTKGVSIYDLPDWLTSRVIIYER
EMADGSWAEITLPVVVMVVCTLATWLFITRTTTGRQLYAFGDNPEGARRFGINIGAMQFIAFGWLGLMAGIAGLMQAHYA
QEVVPNALYGRELDVLAAVVLGGARLGGGKGSVLGCVLGVLLVSITQNGLNLMGVSPFAFKMIVGAIILVAITLSSARIG
NLVPVFATRKSTGGRPADRGES
>Mature_342_residues
MRKLFLSHTTEFVLFAVIIAMSIVLAFATDRFFTLGNGFDLLNISAVNIIFAVGLLVVLISGGIDISFAVAASIVQYVTA
LALERIGGGGWLSGLLIAGGIGIVLGVINAFLIHRFRIISIVATIATFNVYFGLLMFFTKGVSIYDLPDWLTSRVIIYER
EMADGSWAEITLPVVVMVVCTLATWLFITRTTTGRQLYAFGDNPEGARRFGINIGAMQFIAFGWLGLMAGIAGLMQAHYA
QEVVPNALYGRELDVLAAVVLGGARLGGGKGSVLGCVLGVLLVSITQNGLNLMGVSPFAFKMIVGAIILVAITLSSARIG
NLVPVFATRKSTGGRPADRGES

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=332, Percent_Identity=32.2289156626506, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1788896, Length=317, Percent_Identity=32.1766561514196, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI145693152, Length=265, Percent_Identity=31.3207547169811, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1789992, Length=129, Percent_Identity=41.8604651162791, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1790524, Length=316, Percent_Identity=25.9493670886076, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788471, Length=329, Percent_Identity=26.1398176291793, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787794, Length=295, Percent_Identity=27.1186440677966, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082395, Length=299, Percent_Identity=28.0936454849498, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787793, Length=207, Percent_Identity=31.4009661835749, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI145693214, Length=306, Percent_Identity=28.7581699346405, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36332; Mature: 36332

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLFLSHTTEFVLFAVIIAMSIVLAFATDRFFTLGNGFDLLNISAVNIIFAVGLLVVLI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEHHHHHHHHHHHHHHHHHH
SGGIDISFAVAASIVQYVTALALERIGGGGWLSGLLIAGGIGIVLGVINAFLIHRFRIIS
HCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVATIATFNVYFGLLMFFTKGVSIYDLPDWLTSRVIIYEREMADGSWAEITLPVVVMVVC
HHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHH
TLATWLFITRTTTGRQLYAFGDNPEGARRFGINIGAMQFIAFGWLGLMAGIAGLMQAHYA
HHHHHHHHHCCCCCCEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QEVVPNALYGRELDVLAAVVLGGARLGGGKGSVLGCVLGVLLVSITQNGLNLMGVSPFAF
HHHCCHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCCHHHH
KMIVGAIILVAITLSSARIGNLVPVFATRKSTGGRPADRGES
HHHHHHHHHHHHHHCCHHCCCEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MRKLFLSHTTEFVLFAVIIAMSIVLAFATDRFFTLGNGFDLLNISAVNIIFAVGLLVVLI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEHHHHHHHHHHHHHHHHHH
SGGIDISFAVAASIVQYVTALALERIGGGGWLSGLLIAGGIGIVLGVINAFLIHRFRIIS
HCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVATIATFNVYFGLLMFFTKGVSIYDLPDWLTSRVIIYEREMADGSWAEITLPVVVMVVC
HHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHH
TLATWLFITRTTTGRQLYAFGDNPEGARRFGINIGAMQFIAFGWLGLMAGIAGLMQAHYA
HHHHHHHHHCCCCCCEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QEVVPNALYGRELDVLAAVVLGGARLGGGKGSVLGCVLGVLLVSITQNGLNLMGVSPFAF
HHHCCHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCCHHHH
KMIVGAIILVAITLSSARIGNLVPVFATRKSTGGRPADRGES
HHHHHHHHHHHHHHCCHHCCCEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]