Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
---|---|
Accession | NC_008358 |
Length | 3,705,021 |
Click here to switch to the map view.
The map label for this gene is 114800038
Identifier: 114800038
GI number: 114800038
Start: 3393819
End: 3395690
Strand: Reverse
Name: 114800038
Synonym: HNE_3226
Alternate gene names: NA
Gene position: 3395690-3393819 (Counterclockwise)
Preceding gene: 114797308
Following gene: 114798370
Centisome position: 91.65
GC content: 59.67
Gene sequence:
>1872_bases ATGTTGCGCAGCGCTGCGTCCGCTCTCGCCCTCGTTTTTGTTCTTGGGGCGTGCGCGCCCGAGACACCCCAGCCGGCTGC CCCGGCCGAAATGACTGCTGAAGAGCAGGCCGCGATCAGCGAGCAGCTGAACGCGTGGTTTGATACCAAATATGAAGAAC AGCTTCAGGAGAGCCCGGTTCAGCTCTCTTTCCTTGGCCGCAAGGACAAGAATGACCAGATCGACTGCATGACTATTGCT TGCCAGGACGAGCAGCTGGCCAAGGCGAAAGCGGCTGTTGATGAGCTGAAGGCGACCTTCAATTACGATCAGCTTTCGGC CGCCGACAAGGATTCCTACGATCTCTGGGTATTCCAGTATGAGCAGGCCGCAAAGGCGGTCGATTTCCGCGACAACGGCC TGATCTTCGACCAGATGAGCGGCATGCACACTTTCGTGCCGACCTTCCTGATGCAGTTCCATTCGGTGGACGAAGAGGCC GACGCCCGCGCCTATGTGAAGCGCATCACCGAAGGCGCCCGCGCGCTGCGCGAACTGCTGGCGCAGGCACGGGACAAGGC CGGCAAGGGCGTTCATGCGCCGAAGTTTGCGTATGAAGCAGTTGCCGAAGAGTCGAAGAAGCTGATCACCGGCGCGCCGT TCACGGACGGCCCCGACAGCGCCGTTCTGGCAGACTTCAAGACCGATGTTCAGGCCCTCGTCGATGCGGGCAAGACCACG CCGGAAACGGCCGCTGAGCTCATCGCCGAAGCCGAAGCCGCGCTGACGGGCGATTTTCAGGCCGTGTATAACGAGATCAT CGCCTTCACTGAGGAAGATCTGGTCAACTCTCCGGACCCGGCCGGGCCGCAGGGGATCAGCACTCAGCCAAACGGTTCAG CCTTCTATGACTTCATGCTGTCGCAGATGACCACGACCAGCATGACGGCTGACGAGATCCACAATCTGGGCCTTTCGGAG GTCGATCGCATTCATGAAGAGATGGAAGCGATCAAGACGCAGGTTGGCTTTACCGGTACGCTGAACGAATTCTTCGCCAG CATCCGCGACGACAAGGATAATCCAAAGCATTATTATCCTGACACGGATGAAGGCCGTCAGGCCTATATCGATGACGCCA CAGCTGCCATCGAGAAGATCAAGGCGGTTCTGCCGGACTATTTCGGCATTCTGCCGAAAGCTGATCTGGTCGTGAAGCGG GTTGAGCCCTTCCGCGAGCAGGCAGGCGCCGCCCAGCATTACTATCCGGGCACACCCGATGGCTCGCGCCCCGGCGTCTA TTATGCCCACCTTCTCGACATGAAGGCGATGCCCAAGGGTGAGCTGGAAGTGATCGCGTATCACGAAGGTCTGCCGGGCC ACCACATGCAGATCTCGATCGCGCAGGAGCTGACCGGCGTTCCGCAATTCCGCACGCAGGCCGGTTTCACCGCCTATTCG GAAGGTTGGGGCCTCTATTCGGAAAAGCTCGCCAAGGAAATGCCTGGCACCTATACTGATCCGTATTCGGACTTCGGCCG GCTCGGCTCGGAAATCTGGCGCGCGATCCGTCTGGTGGTCGATACCGGTTTGCATTCCAAAGGCTGGACCGAAGAACAGG CGGTGCAATACTTCCTCGACAATTCAGCGATCACCGAAGGCCAGGCACGTTCTGAAGTGCGCCGCTATATCGTGATACCG GGGCAGGCCACCGCCTACAAGATCGGCATGATCGAAATCCAGCAGATGCGGGCCAAAGCCGAAGCCGAGCTGGGCGAGAA GTTCGACATCCGCGCCTTCCATGACACGGTTCTGGGCGGCGGCGCACTGCCGCTGGCCATGCTGGAAGCCAAGATTGACC GCTGGATTGAAGAGGTCAAAGCGGCCGGCTGA
Upstream 100 bases:
>100_bases TTCTCCCTAACCGCGGAAGCGGCGCTTGCCAATTGACGCCGGGAGCGCAGGGGGGTACCCATCCTTATCGTTTTACGGCA AATACCTTGGAGGATTCGCC
Downstream 100 bases:
>100_bases TCTGCCCAAGCTGCTGGACTGAACGCGAGGGCAGGGCTTGCCAGATGGCGCCCTGCCCTCATTCTTTTCTGGGAACAGGC AGAGCACGCCTGAATGCTTG
Product: putative lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 623; Mature: 623
Protein sequence:
>623_residues MLRSAASALALVFVLGACAPETPQPAAPAEMTAEEQAAISEQLNAWFDTKYEEQLQESPVQLSFLGRKDKNDQIDCMTIA CQDEQLAKAKAAVDELKATFNYDQLSAADKDSYDLWVFQYEQAAKAVDFRDNGLIFDQMSGMHTFVPTFLMQFHSVDEEA DARAYVKRITEGARALRELLAQARDKAGKGVHAPKFAYEAVAEESKKLITGAPFTDGPDSAVLADFKTDVQALVDAGKTT PETAAELIAEAEAALTGDFQAVYNEIIAFTEEDLVNSPDPAGPQGISTQPNGSAFYDFMLSQMTTTSMTADEIHNLGLSE VDRIHEEMEAIKTQVGFTGTLNEFFASIRDDKDNPKHYYPDTDEGRQAYIDDATAAIEKIKAVLPDYFGILPKADLVVKR VEPFREQAGAAQHYYPGTPDGSRPGVYYAHLLDMKAMPKGELEVIAYHEGLPGHHMQISIAQELTGVPQFRTQAGFTAYS EGWGLYSEKLAKEMPGTYTDPYSDFGRLGSEIWRAIRLVVDTGLHSKGWTEEQAVQYFLDNSAITEGQARSEVRRYIVIP GQATAYKIGMIEIQQMRAKAEAELGEKFDIRAFHDTVLGGGALPLAMLEAKIDRWIEEVKAAG
Sequences:
>Translated_623_residues MLRSAASALALVFVLGACAPETPQPAAPAEMTAEEQAAISEQLNAWFDTKYEEQLQESPVQLSFLGRKDKNDQIDCMTIA CQDEQLAKAKAAVDELKATFNYDQLSAADKDSYDLWVFQYEQAAKAVDFRDNGLIFDQMSGMHTFVPTFLMQFHSVDEEA DARAYVKRITEGARALRELLAQARDKAGKGVHAPKFAYEAVAEESKKLITGAPFTDGPDSAVLADFKTDVQALVDAGKTT PETAAELIAEAEAALTGDFQAVYNEIIAFTEEDLVNSPDPAGPQGISTQPNGSAFYDFMLSQMTTTSMTADEIHNLGLSE VDRIHEEMEAIKTQVGFTGTLNEFFASIRDDKDNPKHYYPDTDEGRQAYIDDATAAIEKIKAVLPDYFGILPKADLVVKR VEPFREQAGAAQHYYPGTPDGSRPGVYYAHLLDMKAMPKGELEVIAYHEGLPGHHMQISIAQELTGVPQFRTQAGFTAYS EGWGLYSEKLAKEMPGTYTDPYSDFGRLGSEIWRAIRLVVDTGLHSKGWTEEQAVQYFLDNSAITEGQARSEVRRYIVIP GQATAYKIGMIEIQQMRAKAEAELGEKFDIRAFHDTVLGGGALPLAMLEAKIDRWIEEVKAAG >Mature_623_residues MLRSAASALALVFVLGACAPETPQPAAPAEMTAEEQAAISEQLNAWFDTKYEEQLQESPVQLSFLGRKDKNDQIDCMTIA CQDEQLAKAKAAVDELKATFNYDQLSAADKDSYDLWVFQYEQAAKAVDFRDNGLIFDQMSGMHTFVPTFLMQFHSVDEEA DARAYVKRITEGARALRELLAQARDKAGKGVHAPKFAYEAVAEESKKLITGAPFTDGPDSAVLADFKTDVQALVDAGKTT PETAAELIAEAEAALTGDFQAVYNEIIAFTEEDLVNSPDPAGPQGISTQPNGSAFYDFMLSQMTTTSMTADEIHNLGLSE VDRIHEEMEAIKTQVGFTGTLNEFFASIRDDKDNPKHYYPDTDEGRQAYIDDATAAIEKIKAVLPDYFGILPKADLVVKR VEPFREQAGAAQHYYPGTPDGSRPGVYYAHLLDMKAMPKGELEVIAYHEGLPGHHMQISIAQELTGVPQFRTQAGFTAYS EGWGLYSEKLAKEMPGTYTDPYSDFGRLGSEIWRAIRLVVDTGLHSKGWTEEQAVQYFLDNSAITEGQARSEVRRYIVIP GQATAYKIGMIEIQQMRAKAEAELGEKFDIRAFHDTVLGGGALPLAMLEAKIDRWIEEVKAAG
Specific function: Unknown
COG id: COG4805
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68639; Mature: 68639
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRSAASALALVFVLGACAPETPQPAAPAEMTAEEQAAISEQLNAWFDTKYEEQLQESPV CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHCCCHHHHHHCCCC QLSFLGRKDKNDQIDCMTIACQDEQLAKAKAAVDELKATFNYDQLSAADKDSYDLWVFQY EEEEECCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEEEH EQAAKAVDFRDNGLIFDQMSGMHTFVPTFLMQFHSVDEEADARAYVKRITEGARALRELL HHHHHHCCCCCCCEEEHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AQARDKAGKGVHAPKFAYEAVAEESKKLITGAPFTDGPDSAVLADFKTDVQALVDAGKTT HHHHHHCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCEEHHHHHHHHHHHHCCCCC PETAAELIAEAEAALTGDFQAVYNEIIAFTEEDLVNSPDPAGPQGISTQPNGSAFYDFML HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH SQMTTTSMTADEIHNLGLSEVDRIHEEMEAIKTQVGFTGTLNEFFASIRDDKDNPKHYYP HHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCC DTDEGRQAYIDDATAAIEKIKAVLPDYFGILPKADLVVKRVEPFREQAGAAQHYYPGTPD CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC GSRPGVYYAHLLDMKAMPKGELEVIAYHEGLPGHHMQISIAQELTGVPQFRTQAGFTAYS CCCCCEEEHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEHHHHCCCCCHHHHCCCCCHH EGWGLYSEKLAKEMPGTYTDPYSDFGRLGSEIWRAIRLVVDTGLHSKGWTEEQAVQYFLD CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC NSAITEGQARSEVRRYIVIPGQATAYKIGMIEIQQMRAKAEAELGEKFDIRAFHDTVLGG CCCCCCCHHHHHCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC GALPLAMLEAKIDRWIEEVKAAG CCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLRSAASALALVFVLGACAPETPQPAAPAEMTAEEQAAISEQLNAWFDTKYEEQLQESPV CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCHHHHHHHHHHHHHHHCCCHHHHHHCCCC QLSFLGRKDKNDQIDCMTIACQDEQLAKAKAAVDELKATFNYDQLSAADKDSYDLWVFQY EEEEECCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEEEH EQAAKAVDFRDNGLIFDQMSGMHTFVPTFLMQFHSVDEEADARAYVKRITEGARALRELL HHHHHHCCCCCCCEEEHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AQARDKAGKGVHAPKFAYEAVAEESKKLITGAPFTDGPDSAVLADFKTDVQALVDAGKTT HHHHHHCCCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCEEHHHHHHHHHHHHCCCCC PETAAELIAEAEAALTGDFQAVYNEIIAFTEEDLVNSPDPAGPQGISTQPNGSAFYDFML HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH SQMTTTSMTADEIHNLGLSEVDRIHEEMEAIKTQVGFTGTLNEFFASIRDDKDNPKHYYP HHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCC DTDEGRQAYIDDATAAIEKIKAVLPDYFGILPKADLVVKRVEPFREQAGAAQHYYPGTPD CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC GSRPGVYYAHLLDMKAMPKGELEVIAYHEGLPGHHMQISIAQELTGVPQFRTQAGFTAYS CCCCCEEEHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEHHHHCCCCCHHHHCCCCCHH EGWGLYSEKLAKEMPGTYTDPYSDFGRLGSEIWRAIRLVVDTGLHSKGWTEEQAVQYFLD CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC NSAITEGQARSEVRRYIVIPGQATAYKIGMIEIQQMRAKAEAELGEKFDIRAFHDTVLGG CCCCCCCHHHHHCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC GALPLAMLEAKIDRWIEEVKAAG CCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA