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The map label for this gene is yddE [C]

Identifier: 114797308

GI number: 114797308

Start: 3400965

End: 3401783

Strand: Reverse

Name: yddE [C]

Synonym: HNE_3233

Alternate gene names: 114797308

Gene position: 3401783-3400965 (Counterclockwise)

Preceding gene: 114799777

Following gene: 114800038

Centisome position: 91.82

GC content: 63.61

Gene sequence:

>819_bases
ATGCCCACTTATCCCTTCTATCAGGTCGATGCGTTCGCCAACCAGCCCTTTGAGGGCAATCAGGCCTGCGTCATGCCGAT
GGAGGCGTTTCTGCCCGATGACATACTGCTGAAAATCGCGGCGGAGAACAATGTGGCCGAGACAGCCTATCTTGTTCCGC
AGGCGGATGGGGTTTGGGCGCTGCGCTGGTTCACGCCGGCGGTGGAGGTGCCACTGTGCGGACATGCGACGCTGGCCTCG
GCGCATGTCCTGTTTGATGCGGGTGGGTATGACGCCGACATCCTTCATTTCGATACAGTTCAGTCCGGGCGGCTGAGCGT
GCGGCGTCTGGACGATGGCCGGCTGGAGATGGATTTTCCTTCCGCGCCGATCCGGCCTGTTCCGGTGACGGACGAGATTG
TGGCAGCGCTGGGCGCGCGCCCGCTGGAGGCCTGGGGCGGCATGTTTTATGCCGCGCGGTTTGACAGCCCGGATGCGGTG
AAACAGCTGAGCCCTGATCTGAAGGCACTTAAAGCGCTGGGCGCCGAAGGGGGCGGCTGGGACCGGGGCAATTTTGGTTG
CTTTGCGCTGGGCGGGGACGGGGTGGAGGTGACCAGCCGGTTCTTTGCGCCGGGTTCGGGCATTGATGAAGACCCGGCGA
CCGGCAGCTGGCACACAATGCTGTCGCGTATTCTGGGTACGCATTTTGATCTGCCTGAAGCGGCCTGTTGGCAGGCTTAT
CCTGGGCGGGGCGCGCGCGTGGATGTGCGCCTGGAGGGCGACCGGGTAAAGTTGGTCGGCCGGGCGGTGACGGTCATTGA
GGGGCAGTTCCGGCTTTAG

Upstream 100 bases:

>100_bases
GGCGGATGATTAGCCAGGCTTAACGGCCCTGCAGAAAACTTCATTTTACGCTGCCGGTGGGCCATGCCAGAGAAGGGCTC
GCTTCAGCGGAGCCGGTTAC

Downstream 100 bases:

>100_bases
ACCCGGGGCTTCAAGCGGGCACTTCCTTGCCGGCCCAGTCGAAGCATTTGCCGCTGTCTTCCGGAGTGAGATTACCGATG
ACATCCAGCAGGTAGCCGGC

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MPTYPFYQVDAFANQPFEGNQACVMPMEAFLPDDILLKIAAENNVAETAYLVPQADGVWALRWFTPAVEVPLCGHATLAS
AHVLFDAGGYDADILHFDTVQSGRLSVRRLDDGRLEMDFPSAPIRPVPVTDEIVAALGARPLEAWGGMFYAARFDSPDAV
KQLSPDLKALKALGAEGGGWDRGNFGCFALGGDGVEVTSRFFAPGSGIDEDPATGSWHTMLSRILGTHFDLPEAACWQAY
PGRGARVDVRLEGDRVKLVGRAVTVIEGQFRL

Sequences:

>Translated_272_residues
MPTYPFYQVDAFANQPFEGNQACVMPMEAFLPDDILLKIAAENNVAETAYLVPQADGVWALRWFTPAVEVPLCGHATLAS
AHVLFDAGGYDADILHFDTVQSGRLSVRRLDDGRLEMDFPSAPIRPVPVTDEIVAALGARPLEAWGGMFYAARFDSPDAV
KQLSPDLKALKALGAEGGGWDRGNFGCFALGGDGVEVTSRFFAPGSGIDEDPATGSWHTMLSRILGTHFDLPEAACWQAY
PGRGARVDVRLEGDRVKLVGRAVTVIEGQFRL
>Mature_271_residues
PTYPFYQVDAFANQPFEGNQACVMPMEAFLPDDILLKIAAENNVAETAYLVPQADGVWALRWFTPAVEVPLCGHATLASA
HVLFDAGGYDADILHFDTVQSGRLSVRRLDDGRLEMDFPSAPIRPVPVTDEIVAALGARPLEAWGGMFYAARFDSPDAVK
QLSPDLKALKALGAEGGGWDRGNFGCFALGGDGVEVTSRFFAPGSGIDEDPATGSWHTMLSRILGTHFDLPEAACWQAYP
GRGARVDVRLEGDRVKLVGRAVTVIEGQFRL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=296, Percent_Identity=35.8108108108108, Blast_Score=121, Evalue=6e-28,
Organism=Homo sapiens, GI74316009, Length=258, Percent_Identity=36.4341085271318, Blast_Score=110, Evalue=2e-24,
Organism=Escherichia coli, GI1787737, Length=243, Percent_Identity=32.0987654320988, Blast_Score=87, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17542160, Length=323, Percent_Identity=34.3653250773994, Blast_Score=145, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI17542154, Length=323, Percent_Identity=34.3653250773994, Blast_Score=145, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI17542158, Length=323, Percent_Identity=33.1269349845201, Blast_Score=124, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI17542152, Length=323, Percent_Identity=33.1269349845201, Blast_Score=124, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29415; Mature: 29283

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTYPFYQVDAFANQPFEGNQACVMPMEAFLPDDILLKIAAENNVAETAYLVPQADGVWA
CCCCCCEEEEHHCCCCCCCCCEEEEEHHHHCCCCCEEEEECCCCCCCEEEEEECCCCEEE
LRWFTPAVEVPLCGHATLASAHVLFDAGGYDADILHFDTVQSGRLSVRRLDDGRLEMDFP
EEEECCEECCCCCCCHHHHEEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEECC
SAPIRPVPVTDEIVAALGARPLEAWGGMFYAARFDSPDAVKQLSPDLKALKALGAEGGGW
CCCCCCCCCCHHHHHHHCCCCHHHHCCEEEEEECCCHHHHHHCCHHHHHHHHHCCCCCCC
DRGNFGCFALGGDGVEVTSRFFAPGSGIDEDPATGSWHTMLSRILGTHFDLPEAACWQAY
CCCCEEEEEECCCCCEEHHEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHCCC
PGRGARVDVRLEGDRVKLVGRAVTVIEGQFRL
CCCCCEEEEEECCCEEEEEEEEEEEEECEECC
>Mature Secondary Structure 
PTYPFYQVDAFANQPFEGNQACVMPMEAFLPDDILLKIAAENNVAETAYLVPQADGVWA
CCCCCEEEEHHCCCCCCCCCEEEEEHHHHCCCCCEEEEECCCCCCCEEEEEECCCCEEE
LRWFTPAVEVPLCGHATLASAHVLFDAGGYDADILHFDTVQSGRLSVRRLDDGRLEMDFP
EEEECCEECCCCCCCHHHHEEEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEECC
SAPIRPVPVTDEIVAALGARPLEAWGGMFYAARFDSPDAVKQLSPDLKALKALGAEGGGW
CCCCCCCCCCHHHHHHHCCCCHHHHCCEEEEEECCCHHHHHHCCHHHHHHHHHCCCCCCC
DRGNFGCFALGGDGVEVTSRFFAPGSGIDEDPATGSWHTMLSRILGTHFDLPEAACWQAY
CCCCEEEEEECCCCCEEHHEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHCCC
PGRGARVDVRLEGDRVKLVGRAVTVIEGQFRL
CCCCCEEEEEECCCEEEEEEEEEEEEECEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]