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The map label for this gene is yhjC [C]

Identifier: 114799877

GI number: 114799877

Start: 3130606

End: 3131517

Strand: Reverse

Name: yhjC [C]

Synonym: HNE_2973

Alternate gene names: 114799877

Gene position: 3131517-3130606 (Counterclockwise)

Preceding gene: 114799638

Following gene: 114800239

Centisome position: 84.52

GC content: 63.49

Gene sequence:

>912_bases
ATGGATTGGGGTAAGCTCAGATCGTTTCACGCGGCCGCCGAATCCGGCAGCCTCACCCTTGCCGGGGAGCGCCTCGGCAT
CTCCCAATCGGCCGTCTCGCGCCAGATTGCGGCGCTGGAGGAACAGCTCGGCGTCTCCCTGTTCCAGCGCCATGCAAGGG
GCCTCGTGCTCACCGACAGCGGCCACACGCTCTACCGCTCGACCATGGAGATGTCTTCAGCGGCTCAATCGGCCAATACC
GCCCTGCGCGACCAGCAGGAAACGCCCCAGGGCGAGCTGATCGTGGCCGCGCCAGTCGCCTTCGGGTCAATCTGGATGGT
GCCCCGGCTGGGCAATTTCGTGAAGCGGCATCCGGATCTGCGCCTCGATCTGCGCCTCGACGACCAGTTTGAATATGATC
TCCTGAAGCTGGAGGCCGAATGCGCGGTCCGTCTCTGGCCGGCGGACAAGGCCGATCTGATCCAGCGCAAGCTCGGCACG
CTGGGCACAAACCTCTATGCCTCGCCCGAATATCTCAAAGCCCACGGCGTTCCCAAAGAGCCCCAGGACCTCGATAATCA
CCGGATCATCGCCTATGGCGACGAATCCACGCCGCTGTTCGAAATGGCCTTCGCCTGCCGCGTGGGGCGTGATGACGCAC
CGCCGCGCCCGGCGACGCTGAAAGTGAACAATGTATTCGCGATGCTCCGGGCGGTTGATGCCGGCCTCGGCATTGCCGAT
GTGCCTGACTATATGGCCGCCACGCTGCCCCGCCTCGTGCGCGTGCTTCCTGAGGTAACTGGGCCGGTTTTCGATCTTTA
CTTCATTTACCCAAGCGACCTGCGCCGCTCCAAACGCGTGGCCGCGTTCCGGGAATTCCTGACCGCAGAGACAGAGCCTT
TGAGGCGTGCCTCTATGCGTCAGGGATCGTGA

Upstream 100 bases:

>100_bases
TGGAAATGGTGACGCCGCGCCAAGGCCGCCCGCTTCAAATGAAGCGCGCAGGCGTCATTCCTCTTGCCGCAGGTTCAAAC
TCCCGTCACAAACCCTCCCC

Downstream 100 bases:

>100_bases
ACCTTCAGTAACGCATGCAGAAATGCATGATGGGGCTGCTGTGTCGCATGTTGCAATGCAGCGAAAATGCCCTATCTAGG
CGTCATGCCAAGGGTCCTGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MDWGKLRSFHAAAESGSLTLAGERLGISQSAVSRQIAALEEQLGVSLFQRHARGLVLTDSGHTLYRSTMEMSSAAQSANT
ALRDQQETPQGELIVAAPVAFGSIWMVPRLGNFVKRHPDLRLDLRLDDQFEYDLLKLEAECAVRLWPADKADLIQRKLGT
LGTNLYASPEYLKAHGVPKEPQDLDNHRIIAYGDESTPLFEMAFACRVGRDDAPPRPATLKVNNVFAMLRAVDAGLGIAD
VPDYMAATLPRLVRVLPEVTGPVFDLYFIYPSDLRRSKRVAAFREFLTAETEPLRRASMRQGS

Sequences:

>Translated_303_residues
MDWGKLRSFHAAAESGSLTLAGERLGISQSAVSRQIAALEEQLGVSLFQRHARGLVLTDSGHTLYRSTMEMSSAAQSANT
ALRDQQETPQGELIVAAPVAFGSIWMVPRLGNFVKRHPDLRLDLRLDDQFEYDLLKLEAECAVRLWPADKADLIQRKLGT
LGTNLYASPEYLKAHGVPKEPQDLDNHRIIAYGDESTPLFEMAFACRVGRDDAPPRPATLKVNNVFAMLRAVDAGLGIAD
VPDYMAATLPRLVRVLPEVTGPVFDLYFIYPSDLRRSKRVAAFREFLTAETEPLRRASMRQGS
>Mature_303_residues
MDWGKLRSFHAAAESGSLTLAGERLGISQSAVSRQIAALEEQLGVSLFQRHARGLVLTDSGHTLYRSTMEMSSAAQSANT
ALRDQQETPQGELIVAAPVAFGSIWMVPRLGNFVKRHPDLRLDLRLDDQFEYDLLKLEAECAVRLWPADKADLIQRKLGT
LGTNLYASPEYLKAHGVPKEPQDLDNHRIIAYGDESTPLFEMAFACRVGRDDAPPRPATLKVNNVFAMLRAVDAGLGIAD
VPDYMAATLPRLVRVLPEVTGPVFDLYFIYPSDLRRSKRVAAFREFLTAETEPLRRASMRQGS

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=31.3793103448276, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787128, Length=295, Percent_Identity=28.4745762711864, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=27.9310344827586, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI87081978, Length=287, Percent_Identity=29.2682926829268, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1789639, Length=238, Percent_Identity=25.6302521008403, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787589, Length=269, Percent_Identity=27.5092936802974, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789173, Length=292, Percent_Identity=28.0821917808219, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=25.2631578947368, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788706, Length=182, Percent_Identity=30.2197802197802, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786448, Length=127, Percent_Identity=34.6456692913386, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI157672245, Length=147, Percent_Identity=31.9727891156463, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790262, Length=265, Percent_Identity=24.1509433962264, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790011, Length=195, Percent_Identity=24.1025641025641, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33609; Mature: 33609

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWGKLRSFHAAAESGSLTLAGERLGISQSAVSRQIAALEEQLGVSLFQRHARGLVLTDS
CCHHHHHHHHHHCCCCCEEEECHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC
GHTLYRSTMEMSSAAQSANTALRDQQETPQGELIVAAPVAFGSIWMVPRLGNFVKRHPDL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHCCCC
RLDLRLDDQFEYDLLKLEAECAVRLWPADKADLIQRKLGTLGTNLYASPEYLKAHGVPKE
EEEEEECCCCCHHHEEEEECCEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCC
PQDLDNHRIIAYGDESTPLFEMAFACRVGRDDAPPRPATLKVNNVFAMLRAVDAGLGIAD
CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCC
VPDYMAATLPRLVRVLPEVTGPVFDLYFIYPSDLRRSKRVAAFREFLTAETEPLRRASMR
CHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHCC
QGS
CCC
>Mature Secondary Structure
MDWGKLRSFHAAAESGSLTLAGERLGISQSAVSRQIAALEEQLGVSLFQRHARGLVLTDS
CCHHHHHHHHHHCCCCCEEEECHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC
GHTLYRSTMEMSSAAQSANTALRDQQETPQGELIVAAPVAFGSIWMVPRLGNFVKRHPDL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHCCCC
RLDLRLDDQFEYDLLKLEAECAVRLWPADKADLIQRKLGTLGTNLYASPEYLKAHGVPKE
EEEEEECCCCCHHHEEEEECCEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCC
PQDLDNHRIIAYGDESTPLFEMAFACRVGRDDAPPRPATLKVNNVFAMLRAVDAGLGIAD
CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCC
VPDYMAATLPRLVRVLPEVTGPVFDLYFIYPSDLRRSKRVAAFREFLTAETEPLRRASMR
CHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHCC
QGS
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]