Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
---|---|
Accession | NC_008358 |
Length | 3,705,021 |
Click here to switch to the map view.
The map label for this gene is 114799445
Identifier: 114799445
GI number: 114799445
Start: 628588
End: 629472
Strand: Direct
Name: 114799445
Synonym: HNE_0628
Alternate gene names: NA
Gene position: 628588-629472 (Clockwise)
Preceding gene: 114800266
Following gene: 114798227
Centisome position: 16.97
GC content: 63.5
Gene sequence:
>885_bases ATGTCTATGCGCGCAGTATGGATGGCTGCCGGAATCGCCTTGCTGTCAGCCTGTGGGGCCGTGCCCGGACCGGCCTCTGG TTCCGCAGTGCTTCTGGCCGCCGAACCTTCTCTGCGCGTGGAAGGCAACCGGATATTTCTCGCGGCCCGCGTTCAGGGGC TGGCGACGGATGCGCTTCTGGATTCCGGGGCGGAGATGACCCTTGTCGACAAAGGCTTTGCCGCTGAGGCCGGCCTCCTT GCCTTTGGCGACGATGAAGTGAAAGGCACCGGCGCGGGCACGGAGCGCGTGCAGTTTGCGCAAGGCGTGACCATCGCGGC GGCTGGAAAGCAGCTTGCCGACCAGACTGTGGCGATCCTTGATCTGACGGATATTTCAGAGCGGGTCGTTGGTCATCCGC TGACGGTCATTCTGGGCCGGGAGATTTTTGATGCGGGCATCTATGCGCTGGATGTTGACGCTGGCCGGTTTCAAAGCGTT GCGCCCGAGGCCGTGCCAGCGGCGGAGCCGCTTGCGCTGAGCGAAGCAAACGGCATCAAACAGGTCGCTATCACGATAGA CGGCGTGCCTGTGCTGGCAGACTTCGACCTGGGCAATGGCAACGAAATTCTGCTCAGCCGCGAGTTTGCGGAGCGCGCCG GCCTGCTGGAGCCGGCAAATATTCTGGGCACGAAGCTGGGCGGGGGCATCGGCGGCCCGGTCGAACGCACGCTGGTGCGG GTCGAGACGCTCGAAATCGGCGGGCATGTGCTGCGGAATGTGACTGCGGCGGTCTCTCCGCCCGGTGACGGGGCAGACGC AAATATCGGCGTATCCGTGTTGCGTGATTTCACACTGGTGATCGATTTCGCAGGAAACCGTGTGTGGCTGGAACCGCGCG CGTGA
Upstream 100 bases:
>100_bases CCGAAGTGGTGACAGGCGGGCCTGTCTCGCCGGGCGATGTGATCGAAGCTCTGATCACGCAAGACCAATCCCGCCAGCTG GCGTCACCGGAGAAGACCTG
Downstream 100 bases:
>100_bases CGCCGCCCACCTATGATGATCTGATCCGGCATGCGGCGCGCCGTTTCAAGGACGCCGGTCTTTCGGAGGCGTATCAGAAT GCCGTGCTGCTGATGGTTCA
Product: putative lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MSMRAVWMAAGIALLSACGAVPGPASGSAVLLAAEPSLRVEGNRIFLAARVQGLATDALLDSGAEMTLVDKGFAAEAGLL AFGDDEVKGTGAGTERVQFAQGVTIAAAGKQLADQTVAILDLTDISERVVGHPLTVILGREIFDAGIYALDVDAGRFQSV APEAVPAAEPLALSEANGIKQVAITIDGVPVLADFDLGNGNEILLSREFAERAGLLEPANILGTKLGGGIGGPVERTLVR VETLEIGGHVLRNVTAAVSPPGDGADANIGVSVLRDFTLVIDFAGNRVWLEPRA
Sequences:
>Translated_294_residues MSMRAVWMAAGIALLSACGAVPGPASGSAVLLAAEPSLRVEGNRIFLAARVQGLATDALLDSGAEMTLVDKGFAAEAGLL AFGDDEVKGTGAGTERVQFAQGVTIAAAGKQLADQTVAILDLTDISERVVGHPLTVILGREIFDAGIYALDVDAGRFQSV APEAVPAAEPLALSEANGIKQVAITIDGVPVLADFDLGNGNEILLSREFAERAGLLEPANILGTKLGGGIGGPVERTLVR VETLEIGGHVLRNVTAAVSPPGDGADANIGVSVLRDFTLVIDFAGNRVWLEPRA >Mature_293_residues SMRAVWMAAGIALLSACGAVPGPASGSAVLLAAEPSLRVEGNRIFLAARVQGLATDALLDSGAEMTLVDKGFAAEAGLLA FGDDEVKGTGAGTERVQFAQGVTIAAAGKQLADQTVAILDLTDISERVVGHPLTVILGREIFDAGIYALDVDAGRFQSVA PEAVPAAEPLALSEANGIKQVAITIDGVPVLADFDLGNGNEILLSREFAERAGLLEPANILGTKLGGGIGGPVERTLVRV ETLEIGGHVLRNVTAAVSPPGDGADANIGVSVLRDFTLVIDFAGNRVWLEPRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30095; Mature: 29964
Theoretical pI: Translated: 4.23; Mature: 4.23
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00141 ASP_PROTEASE ; PS50175 ASP_PROT_RETROV
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMRAVWMAAGIALLSACGAVPGPASGSAVLLAAEPSLRVEGNRIFLAARVQGLATDALL CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEECCEEEEEEEECCHHHHHHH DSGAEMTLVDKGFAAEAGLLAFGDDEVKGTGAGTERVQFAQGVTIAAAGKQLADQTVAIL CCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCEEEEECCCHHCCCEEEEE DLTDISERVVGHPLTVILGREIFDAGIYALDVDAGRFQSVAPEAVPAAEPLALSEANGIK EECHHHHHHHCCCEEEEECHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCE QVAITIDGVPVLADFDLGNGNEILLSREFAERAGLLEPANILGTKLGGGIGGPVERTLVR EEEEEECCEEEEEEEECCCCCEEEEEHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHEEEE VETLEIGGHVLRNVTAAVSPPGDGADANIGVSVLRDFTLVIDFAGNRVWLEPRA EEEEHHCHHHHHCCCEEECCCCCCCCCCCHHHHHEEEEEEEEECCCEEEEECCC >Mature Secondary Structure SMRAVWMAAGIALLSACGAVPGPASGSAVLLAAEPSLRVEGNRIFLAARVQGLATDALL CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEECCEEEEEEEECCHHHHHHH DSGAEMTLVDKGFAAEAGLLAFGDDEVKGTGAGTERVQFAQGVTIAAAGKQLADQTVAIL CCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCEEEEECCCHHCCCEEEEE DLTDISERVVGHPLTVILGREIFDAGIYALDVDAGRFQSVAPEAVPAAEPLALSEANGIK EECHHHHHHHCCCEEEEECHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCE QVAITIDGVPVLADFDLGNGNEILLSREFAERAGLLEPANILGTKLGGGIGGPVERTLVR EEEEEECCEEEEEEEECCCCCEEEEEHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHEEEE VETLEIGGHVLRNVTAAVSPPGDGADANIGVSVLRDFTLVIDFAGNRVWLEPRA EEEEHHCHHHHHCCCEEECCCCCCCCCCCHHHHHEEEEEEEEECCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA