Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
---|---|
Accession | NC_008358 |
Length | 3,705,021 |
Click here to switch to the map view.
The map label for this gene is acrR [C]
Identifier: 114798400
GI number: 114798400
Start: 654786
End: 655376
Strand: Direct
Name: acrR [C]
Synonym: HNE_0651
Alternate gene names: 114798400
Gene position: 654786-655376 (Clockwise)
Preceding gene: 114797419
Following gene: 114800411
Centisome position: 17.67
GC content: 62.77
Gene sequence:
>591_bases ATGCCGAAACGCACAAAAGAGCAGGCCGCTGAAACGCGCGAGTCTTTACTCAGCGCCGCTAGAGAATCTTTTGCAAATCA AGGGTTTGCTGCCACAAGCGTGGCGACAGTAGCCGCTGCAGCGGGCACAACCAAGGGCGCACTGTTTCATTATTTTAGCA GTAAGGAGGCCCTGTTCCTCGAAGTTTGGACGGCCCTTCAGCTGGAAATGGACGCCGCGGCCCGAGAGGCAGCAAAGGCG GCCCGGTCGGGAACGGACCCCTATGCGGCCTTCCTCGCGGGCTGCCGGGTCTATCTCGAATGGGCCACCCGGCCCGATTA CCAGACCATTGTCCTTGTCGACGGCCCCTCGGTCCTTGGCATGGCCCGCTGGCATGAACTCGACTTCCAGCTCGGCATGA ACAACATGACCCAGGGCGCCGCCTATCTCGCCCGCCAGGGCCTGCTGGCCGAAGACCGTGTCCGACCCGCCGCCGTCCTC CTTCAGGCGGCGCTCAATGGCGCGGGCTTTGCCCTCTCCTCCAGCTACCGCGATGTGACCGTCAACGAGCTGTTCACCAC CTTCGAGCAGATCCTGCGCGGCCTGCGTTAA
Upstream 100 bases:
>100_bases GTGTTCAAGTGAGCAGCGTAGGTCTTTTGAAAGACCCGCAACCAAAAAAGGTTACCCTTTTTACATACCACTGGTATGAT CGTGCGCAAGAGGTGTGGGG
Downstream 100 bases:
>100_bases ATGGCATAGACTTCGCGCAACGATCCCAGTGCGCGGGGTTTATTATGCGGCGGAAAGCCGATACGGGTCACCGCGAAAGA AACGGAAGGCCCTCTCCTCA
Product: TetR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; TetR Family Transcriptional Regulatory Protein
Number of amino acids: Translated: 196; Mature: 195
Protein sequence:
>196_residues MPKRTKEQAAETRESLLSAARESFANQGFAATSVATVAAAAGTTKGALFHYFSSKEALFLEVWTALQLEMDAAAREAAKA ARSGTDPYAAFLAGCRVYLEWATRPDYQTIVLVDGPSVLGMARWHELDFQLGMNNMTQGAAYLARQGLLAEDRVRPAAVL LQAALNGAGFALSSSYRDVTVNELFTTFEQILRGLR
Sequences:
>Translated_196_residues MPKRTKEQAAETRESLLSAARESFANQGFAATSVATVAAAAGTTKGALFHYFSSKEALFLEVWTALQLEMDAAAREAAKA ARSGTDPYAAFLAGCRVYLEWATRPDYQTIVLVDGPSVLGMARWHELDFQLGMNNMTQGAAYLARQGLLAEDRVRPAAVL LQAALNGAGFALSSSYRDVTVNELFTTFEQILRGLR >Mature_195_residues PKRTKEQAAETRESLLSAARESFANQGFAATSVATVAAAAGTTKGALFHYFSSKEALFLEVWTALQLEMDAAAREAAKAA RSGTDPYAAFLAGCRVYLEWATRPDYQTIVLVDGPSVLGMARWHELDFQLGMNNMTQGAAYLARQGLLAEDRVRPAAVLL QAALNGAGFALSSSYRDVTVNELFTTFEQILRGLR
Specific function: Potential Regulator Protein For The Acrab Genes. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786669, Length=63, Percent_Identity=42.8571428571429, Blast_Score=64, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21246; Mature: 21115
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKRTKEQAAETRESLLSAARESFANQGFAATSVATVAAAAGTTKGALFHYFSSKEALFL CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHEECCCCCCHHH EVWTALQLEMDAAAREAAKAARSGTDPYAAFLAGCRVYLEWATRPDYQTIVLVDGPSVLG HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEECCCCCCEEEEEECCCCHHH MARWHELDFQLGMNNMTQGAAYLARQGLLAEDRVRPAAVLLQAALNGAGFALSSSYRDVT HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHCCCCEEECCCCCCHH VNELFTTFEQILRGLR HHHHHHHHHHHHHHCC >Mature Secondary Structure PKRTKEQAAETRESLLSAARESFANQGFAATSVATVAAAAGTTKGALFHYFSSKEALFL CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHEECCCCCCHHH EVWTALQLEMDAAAREAAKAARSGTDPYAAFLAGCRVYLEWATRPDYQTIVLVDGPSVLG HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEECCCCCCEEEEEECCCCHHH MARWHELDFQLGMNNMTQGAAYLARQGLLAEDRVRPAAVLLQAALNGAGFALSSSYRDVT HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHCCCCEEECCCCCCHH VNELFTTFEQILRGLR HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA