Definition Hyphomonas neptunium ATCC 15444 chromosome, complete genome.
Accession NC_008358
Length 3,705,021

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The map label for this gene is glnD [H]

Identifier: 114797974

GI number: 114797974

Start: 510405

End: 513248

Strand: Direct

Name: glnD [H]

Synonym: HNE_0518

Alternate gene names: 114797974

Gene position: 510405-513248 (Clockwise)

Preceding gene: 114799247

Following gene: 114797264

Centisome position: 13.78

GC content: 64.14

Gene sequence:

>2844_bases
ATGACCTCTCCGAACAAACCGCCTCCGACCCTCGTTGCATCCGCCCGCCCCCCGGCCGCCCGCCGGCCGGGCAAATGGCG
CATTGCCGACATCATTGACGGCCGCGCCCTGCGGGTGAAGCTGACAGCCGCCGCGCTGGACAATATCGGCAGCGATGCCG
CCGCCCGAAAATCTGCGCTGAACCTGCTGCACGGCGCCATGTTCCGGGGCCGCCTGATCGCGCAGGAGCGACTGCAGCAG
GGGGCGGACGGGCTGGATACGGCTCGCCTTCTGGCCGCGGTGCAGGATGAAGTCATCCACGCGCTGTATGATTTCACCGT
CACGCACGTTCACCGCGCCTCAAACCCGACCGAGGCCGAACGCCTGGCGATCCTCGCCACCGGCGGTTATGGCCGCAGCG
TGATGGCGCCGTCGTCCGATACAGACCTGCTCTTCCTGCGCGCCTATAAGGCCAGCCCGCATACAGAGAGTGTCATCGAA
TACATGCTCTATGCCCTCTGGGACATGGGGCTGAAAGTCGGCAATGCCTTCCGTACACCGCTTGATTGCGTCAAGCTGGC
GGCGGAGGATGTTACCATCAAGACCAGCCTGCTGGACGCCCGGTTCATCTGCGGGGATGAAGTGCTGGCCAATGACATGA
TGGCGCTGTTCCAGAAGGATGCCGTCAAGGGCAAGGACGCCCAGTTCATTGCCGACAAGCTGGCCGAGCGCGATTCCCGG
CACACACGGATGGGCGATGCGCGCTATGTCGTTGAGCCGAATGTGAAAGACGGCAAGGGCGGCCTGCGCGACCTGCAGAC
GCTCTACTGGATCGTCAAGCACATGTATGGCGGGCGCACGCTGGAAGATGTGATGCATGCTGGTCCGTTTACGGATCATG
AGTATGCGACCTTCATTCGCGCTGCCCGGTTCCTCTGGACGGTGCGCTGCCACATGCATTTTGTCACCGGGCGCGCCGAA
GACCGGCTGAGCTTTGACCTCCAGCCTGAGATCGCCTCCCGCATGGGGTACCGCGACCGGGAAGGGCAGCAGGGGGTGGA
GCGCTTCATGAAGCGCTATTTCCTCGTGGCCAAGGATGTCGGCGGACTGACGCGTATTCTGGCCGCCAAGCTGGAAGCCG
ATCACAAGAAGAAACCCGAAGGCTTGCGCCGCTTCCTGCCTTCTCGCCCGCCCCAACCGCTGGCCGAAACAGGCTTCCTG
ATCGAGGCGGGCCGCATCAACATCACCGAAGACAAGGTGATGTCGGATGATCCGCTCAACATGATCCGCCTGTTCACCAT
CGCCCGGCGCGAACAGAAGGATATTCACCCCGCCGCGCTCACCGCGCTCACCCGGAAACTCCGGGGGCTGAATGAGGCAG
CGCGGGAAACAGACAGCGCGCGCGAGCTCATCCTCGATGCCATCCTCGGCGGCAAGGAGCCTGGCCCGATCTTGCGCCGC
ATGAATGAAGCCGGTGTTCTCGGCCGCGCCATTCCCGAGTTCGGCTCCATCGTCGCCCAGACGCAGTTCAACATGTATCA
TCACTATACGGTGGATGAGCATACGCTGCGCGCGGTCGAAACGATCGCAGACCTCGAATATGGCCGGGGCGGCACGGCGC
CGCTGGCCACAGAACTCTTCGGCCAGATTGAAAACCGCCGTGCGCTCTATCTGGCGATGCTTCTGCACGATACCGGCAAG
GGCAAGGGCGACCAGCAGGAAGCCGGCATGCGCACCTCGCGCCGCGCCTGCGAGCGCCTCGGCATCCCGGACGAGGAAAC
CGATCTCGTCGTCTGGCTGGTCGGCCACCATCTGGAAATGAGTGAGACCGCCCAGAAGCGTGACATTGGCGACCCGCGCA
CCGTGGCGACCTTCGCGCGCCTTGTCGGCTCGCTGGAGCGGCTGCGTCTCCTCTACATTCTCACTGTTGCCGACATCAAA
GCCGTTGGCCCCGCCGTGTGGAACGCGTGGAAGGGCCAGCTTCTGGCCGATCTCTATCACAACACTGCCGCCGCCCTGCG
CGGCGGGCGTACCGATGAAGCCGCCGTACTCTCCGAACTGGAGCGCCGCGCCGAGATGCGCCGCGAAGCCCTCGTCGAGC
GTATCGGCTCGGTGCCTTCGTTGCTGCTGGAACTCGAAACCGCCTACTGGACGGGCTTTGATCCCGACGACATCGCCTGG
CATGCCGCGGCCCTTTCAAAAGGCGGCGAGGTGGTCACCTCTCGCATGGCGCCTGAAGGCGGGGCCGTTGCACTGCTGGT
GTCGGGCAAGGACCGCACCGGTCTCTTCGCCGATCTCGCCGGAACGCTCGCGCGCCTCGGCGCCAATATTGTCGCCGCAC
AGGTTTTCACTTCCAAGGGCGGGCGCATCGTTGACGTGTTCATGCTGCAGGACGCCCGCGGCCTCCCTTATGGCGAGGGC
GACGGGCCGCGCCTGGCAAAGCTGGAACAGGCCATCCTCGGCGCGCTGGGCGGCACAGTCCCCAGCGGCTCGGTCAAATC
CCGCGCTGGCCGGCGTGAAGCTGCCTTCCTGGTTCAGCCCTCGGTGCAGATCCATGAAGAAGTCTCGATCGAGCATATGG
TCATCGATGTCGCTGCGCGCGACCGGCCCGGCCTGCTGCATGAAGTGGCTGAAGTGCTCGCTGATATGAAGCTCTCGATC
CATTCGGCGCATGTCGGCTCCTATGGGGAGCGGGTGTTCGATGCGTTCTATGTGAAACCCGGCAGCCCCTCAGGCAAGAT
TTCCAAAGCCCGCAAAGAAGCCCTCCGGGAACGTCTTTTCGCCGTACTTTTGCGGGAAGAACCAGAAGGCCCGCACACTC
CGGCCCGCAAGCTCAAACGCTCGCGCGCCGTGGACAGCTTCTGA

Upstream 100 bases:

>100_bases
TCTCGCCAATTCGCCCTTATGGTACAACAAGGTGCACACGATTGTGGGGTAAGCACAGGGCGATAGCCGAACCCGGCAAA
CCTGCTATGTTGCGCCCCGC

Downstream 100 bases:

>100_bases
GAATTGGTTCAACCGGGGTATCCATGAGCCTCGCCCGCAACACTGCCGTTCAGGCCTCGCTGACCCTGGCGAGCCGCATC
CTTGGCCTCGCGCGGGATGT

Product: PII uridylyl-transferase

Products: NA

Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]

Number of amino acids: Translated: 947; Mature: 946

Protein sequence:

>947_residues
MTSPNKPPPTLVASARPPAARRPGKWRIADIIDGRALRVKLTAAALDNIGSDAAARKSALNLLHGAMFRGRLIAQERLQQ
GADGLDTARLLAAVQDEVIHALYDFTVTHVHRASNPTEAERLAILATGGYGRSVMAPSSDTDLLFLRAYKASPHTESVIE
YMLYALWDMGLKVGNAFRTPLDCVKLAAEDVTIKTSLLDARFICGDEVLANDMMALFQKDAVKGKDAQFIADKLAERDSR
HTRMGDARYVVEPNVKDGKGGLRDLQTLYWIVKHMYGGRTLEDVMHAGPFTDHEYATFIRAARFLWTVRCHMHFVTGRAE
DRLSFDLQPEIASRMGYRDREGQQGVERFMKRYFLVAKDVGGLTRILAAKLEADHKKKPEGLRRFLPSRPPQPLAETGFL
IEAGRINITEDKVMSDDPLNMIRLFTIARREQKDIHPAALTALTRKLRGLNEAARETDSARELILDAILGGKEPGPILRR
MNEAGVLGRAIPEFGSIVAQTQFNMYHHYTVDEHTLRAVETIADLEYGRGGTAPLATELFGQIENRRALYLAMLLHDTGK
GKGDQQEAGMRTSRRACERLGIPDEETDLVVWLVGHHLEMSETAQKRDIGDPRTVATFARLVGSLERLRLLYILTVADIK
AVGPAVWNAWKGQLLADLYHNTAAALRGGRTDEAAVLSELERRAEMRREALVERIGSVPSLLLELETAYWTGFDPDDIAW
HAAALSKGGEVVTSRMAPEGGAVALLVSGKDRTGLFADLAGTLARLGANIVAAQVFTSKGGRIVDVFMLQDARGLPYGEG
DGPRLAKLEQAILGALGGTVPSGSVKSRAGRREAAFLVQPSVQIHEEVSIEHMVIDVAARDRPGLLHEVAEVLADMKLSI
HSAHVGSYGERVFDAFYVKPGSPSGKISKARKEALRERLFAVLLREEPEGPHTPARKLKRSRAVDSF

Sequences:

>Translated_947_residues
MTSPNKPPPTLVASARPPAARRPGKWRIADIIDGRALRVKLTAAALDNIGSDAAARKSALNLLHGAMFRGRLIAQERLQQ
GADGLDTARLLAAVQDEVIHALYDFTVTHVHRASNPTEAERLAILATGGYGRSVMAPSSDTDLLFLRAYKASPHTESVIE
YMLYALWDMGLKVGNAFRTPLDCVKLAAEDVTIKTSLLDARFICGDEVLANDMMALFQKDAVKGKDAQFIADKLAERDSR
HTRMGDARYVVEPNVKDGKGGLRDLQTLYWIVKHMYGGRTLEDVMHAGPFTDHEYATFIRAARFLWTVRCHMHFVTGRAE
DRLSFDLQPEIASRMGYRDREGQQGVERFMKRYFLVAKDVGGLTRILAAKLEADHKKKPEGLRRFLPSRPPQPLAETGFL
IEAGRINITEDKVMSDDPLNMIRLFTIARREQKDIHPAALTALTRKLRGLNEAARETDSARELILDAILGGKEPGPILRR
MNEAGVLGRAIPEFGSIVAQTQFNMYHHYTVDEHTLRAVETIADLEYGRGGTAPLATELFGQIENRRALYLAMLLHDTGK
GKGDQQEAGMRTSRRACERLGIPDEETDLVVWLVGHHLEMSETAQKRDIGDPRTVATFARLVGSLERLRLLYILTVADIK
AVGPAVWNAWKGQLLADLYHNTAAALRGGRTDEAAVLSELERRAEMRREALVERIGSVPSLLLELETAYWTGFDPDDIAW
HAAALSKGGEVVTSRMAPEGGAVALLVSGKDRTGLFADLAGTLARLGANIVAAQVFTSKGGRIVDVFMLQDARGLPYGEG
DGPRLAKLEQAILGALGGTVPSGSVKSRAGRREAAFLVQPSVQIHEEVSIEHMVIDVAARDRPGLLHEVAEVLADMKLSI
HSAHVGSYGERVFDAFYVKPGSPSGKISKARKEALRERLFAVLLREEPEGPHTPARKLKRSRAVDSF
>Mature_946_residues
TSPNKPPPTLVASARPPAARRPGKWRIADIIDGRALRVKLTAAALDNIGSDAAARKSALNLLHGAMFRGRLIAQERLQQG
ADGLDTARLLAAVQDEVIHALYDFTVTHVHRASNPTEAERLAILATGGYGRSVMAPSSDTDLLFLRAYKASPHTESVIEY
MLYALWDMGLKVGNAFRTPLDCVKLAAEDVTIKTSLLDARFICGDEVLANDMMALFQKDAVKGKDAQFIADKLAERDSRH
TRMGDARYVVEPNVKDGKGGLRDLQTLYWIVKHMYGGRTLEDVMHAGPFTDHEYATFIRAARFLWTVRCHMHFVTGRAED
RLSFDLQPEIASRMGYRDREGQQGVERFMKRYFLVAKDVGGLTRILAAKLEADHKKKPEGLRRFLPSRPPQPLAETGFLI
EAGRINITEDKVMSDDPLNMIRLFTIARREQKDIHPAALTALTRKLRGLNEAARETDSARELILDAILGGKEPGPILRRM
NEAGVLGRAIPEFGSIVAQTQFNMYHHYTVDEHTLRAVETIADLEYGRGGTAPLATELFGQIENRRALYLAMLLHDTGKG
KGDQQEAGMRTSRRACERLGIPDEETDLVVWLVGHHLEMSETAQKRDIGDPRTVATFARLVGSLERLRLLYILTVADIKA
VGPAVWNAWKGQLLADLYHNTAAALRGGRTDEAAVLSELERRAEMRREALVERIGSVPSLLLELETAYWTGFDPDDIAWH
AAALSKGGEVVTSRMAPEGGAVALLVSGKDRTGLFADLAGTLARLGANIVAAQVFTSKGGRIVDVFMLQDARGLPYGEGD
GPRLAKLEQAILGALGGTVPSGSVKSRAGRREAAFLVQPSVQIHEEVSIEHMVIDVAARDRPGLLHEVAEVLADMKLSIH
SAHVGSYGERVFDAFYVKPGSPSGKISKARKEALRERLFAVLLREEPEGPHTPARKLKRSRAVDSF

Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]

COG id: COG2844

COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glnD family [H]

Homologues:

Organism=Escherichia coli, GI1786363, Length=805, Percent_Identity=31.1801242236025, Blast_Score=362, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002912
- InterPro:   IPR010043
- InterPro:   IPR003607
- InterPro:   IPR013546 [H]

Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase [H]

EC number: =2.7.7.59 [H]

Molecular weight: Translated: 104256; Mature: 104125

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSPNKPPPTLVASARPPAARRPGKWRIADIIDGRALRVKLTAAALDNIGSDAAARKSAL
CCCCCCCCCCEEECCCCCCCCCCCCEEEHEECCCCEEEEEEHHHHHHCCCCHHHHHHHHH
NLLHGAMFRGRLIAQERLQQGADGLDTARLLAAVQDEVIHALYDFTVTHVHRASNPTEAE
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
RLAILATGGYGRSVMAPSSDTDLLFLRAYKASPHTESVIEYMLYALWDMGLKVGNAFRTP
EEEEEEECCCCCCEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHCCH
LDCVKLAAEDVTIKTSLLDARFICGDEVLANDMMALFQKDAVKGKDAQFIADKLAERDSR
HHHHHHHHCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH
HTRMGDARYVVEPNVKDGKGGLRDLQTLYWIVKHMYGGRTLEDVMHAGPFTDHEYATFIR
HCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHH
AARFLWTVRCHMHFVTGRAEDRLSFDLQPEIASRMGYRDREGQQGVERFMKRYFLVAKDV
HHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
GGLTRILAAKLEADHKKKPEGLRRFLPSRPPQPLAETGFLIEAGRINITEDKVMSDDPLN
CHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHCCCEEECCEEEECCCCCCCCCCHH
MIRLFTIARREQKDIHPAALTALTRKLRGLNEAARETDSARELILDAILGGKEPGPILRR
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
MNEAGVLGRAIPEFGSIVAQTQFNMYHHYTVDEHTLRAVETIADLEYGRGGTAPLATELF
HHHCCHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
GQIENRRALYLAMLLHDTGKGKGDQQEAGMRTSRRACERLGIPDEETDLVVWLVGHHLEM
HHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCH
SETAQKRDIGDPRTVATFARLVGSLERLRLLYILTVADIKAVGPAVWNAWKGQLLADLYH
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NTAAALRGGRTDEAAVLSELERRAEMRREALVERIGSVPSLLLELETAYWTGFDPDDIAW
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHH
HAAALSKGGEVVTSRMAPEGGAVALLVSGKDRTGLFADLAGTLARLGANIVAAQVFTSKG
HHHHHCCCCHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCC
GRIVDVFMLQDARGLPYGEGDGPRLAKLEQAILGALGGTVPSGSVKSRAGRREAAFLVQP
CEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEEECC
SVQIHEEVSIEHMVIDVAARDRPGLLHEVAEVLADMKLSIHSAHVGSYGERVFDAFYVKP
CHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEECC
GSPSGKISKARKEALRERLFAVLLREEPEGPHTPARKLKRSRAVDSF
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
TSPNKPPPTLVASARPPAARRPGKWRIADIIDGRALRVKLTAAALDNIGSDAAARKSAL
CCCCCCCCCEEECCCCCCCCCCCCEEEHEECCCCEEEEEEHHHHHHCCCCHHHHHHHHH
NLLHGAMFRGRLIAQERLQQGADGLDTARLLAAVQDEVIHALYDFTVTHVHRASNPTEAE
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
RLAILATGGYGRSVMAPSSDTDLLFLRAYKASPHTESVIEYMLYALWDMGLKVGNAFRTP
EEEEEEECCCCCCEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHCCH
LDCVKLAAEDVTIKTSLLDARFICGDEVLANDMMALFQKDAVKGKDAQFIADKLAERDSR
HHHHHHHHCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH
HTRMGDARYVVEPNVKDGKGGLRDLQTLYWIVKHMYGGRTLEDVMHAGPFTDHEYATFIR
HCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHH
AARFLWTVRCHMHFVTGRAEDRLSFDLQPEIASRMGYRDREGQQGVERFMKRYFLVAKDV
HHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
GGLTRILAAKLEADHKKKPEGLRRFLPSRPPQPLAETGFLIEAGRINITEDKVMSDDPLN
CHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHCCCEEECCEEEECCCCCCCCCCHH
MIRLFTIARREQKDIHPAALTALTRKLRGLNEAARETDSARELILDAILGGKEPGPILRR
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
MNEAGVLGRAIPEFGSIVAQTQFNMYHHYTVDEHTLRAVETIADLEYGRGGTAPLATELF
HHHCCHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
GQIENRRALYLAMLLHDTGKGKGDQQEAGMRTSRRACERLGIPDEETDLVVWLVGHHLEM
HHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCH
SETAQKRDIGDPRTVATFARLVGSLERLRLLYILTVADIKAVGPAVWNAWKGQLLADLYH
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NTAAALRGGRTDEAAVLSELERRAEMRREALVERIGSVPSLLLELETAYWTGFDPDDIAW
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHH
HAAALSKGGEVVTSRMAPEGGAVALLVSGKDRTGLFADLAGTLARLGANIVAAQVFTSKG
HHHHHCCCCHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCC
GRIVDVFMLQDARGLPYGEGDGPRLAKLEQAILGALGGTVPSGSVKSRAGRREAAFLVQP
CEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEEECC
SVQIHEEVSIEHMVIDVAARDRPGLLHEVAEVLADMKLSIHSAHVGSYGERVFDAFYVKP
CHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEECC
GSPSGKISKARKEALRERLFAVLLREEPEGPHTPARKLKRSRAVDSF
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA