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The map label for this gene is rne [H]

Identifier: 114331691

GI number: 114331691

Start: 1806079

End: 1808628

Strand: Direct

Name: rne [H]

Synonym: Neut_1707

Alternate gene names: 114331691

Gene position: 1806079-1808628 (Clockwise)

Preceding gene: 114331689

Following gene: 114331694

Centisome position: 67.87

GC content: 50.35

Gene sequence:

>2550_bases
ATGAAACGCATGTTATTCAACGCGACCCAGCCCGAAGAGCTGCGTGTTGCTATTGTAGATGGGCAGAAGCTCATTGATAT
TGATATTGAAACCCTGGGCAAGGAACAACGCAAAAGCAATATTTATAAAGCTGCTGTTACCCGCCTTGAACCAAGCCTTG
AAGCGGCTTTTGTTGATTATGGCGCCGGGCGCCATGGTTTTTTACCCTATAAGGAGATCGCTCCCACCTGTTTTGACAAA
AATACCGAACGATCCAGTCACCGTATCGGTGAACTACTGCGCGAAGGCCAGGAGCTGATTGTACAGGTTGACAAGGATGA
ACGCGGAAATAAAGGTGCTGCGCTCACCACCTATATCTCACTGGCTGGTCGTTACCTTGTTCTGATGCCCAACAACCCGC
AAGGGGGAGGTATTTCACGCCGTGTCAGTGCGGAAGAACGGGCAGAACTGCGTGAAGTAATCAACCATCTTCAGGTGCCC
GATGGCATGAGTATCATTGCGCGTACCGCTGGTATTGGGCGCAACGAAGAGGAATTGCAGTGGGATTTGAACTATCTGGT
GCAACTCTGGCGTGCAATCGAGGGAGCAGCCAGTAGTGAGCGTGGTGTCTTTCTGATTTATCAGGAAAGCAGTCTCGTAA
TTCGCGCCATTCGTGATTATTTCCATGCGGAAATCGGCGAAATTCTGATTGATAACCCTGAAATATATGAGCAGGCATAC
CAGTTCATGGCCAATGTCATGCCGGCAAACGTTGACCGGCTAAAGCTCTACCAGGACGATATTCCTCTGTTTTCTCGTTT
TCAGATTGAGCACCAGATTGAAACAGCCTATTCTCGCCAGGTCACACTGCCTTCCGGTGGCTCGATTGTGATTGATCATA
CCGAGGCACTGGTTTCAATTGACGTTAACTCGGCGCGCGCCATACGTGGCTCTGATATAGAAAACACTGCACTCAACACC
AATCTGGAGGCTGCTGACGAAATCGCCCGGCAATTGCGTTTGCGCGACCTGGGAGGCTTGGTGGTCGTTGATTTTATCGA
TATGGAAGTCACCCGCAATCAGCGGGAAGTGGAAACCAACCTGCTGAAGGCATTGCGCCTGGATCGTGCGCGCGTCCAGA
TCGGCAAAATTTCCCGTTTCGGATTGCTGGAATTATCCCGTCAGCGTCTGCGGCCTTCTCTCGGGGAAGGCAACTACATC
CCCTGCCCTCGCTGTCATGGTACCGGCCATATCCGGGGAACAGATTCATCTGCGCTGCACATACTCAGAATTATCCAAGA
AGAAGCCATGAAGGAGCAGACTAGCATGCTGCAGGTGCAGTTGCCGGTTGATGTCGCCACATTCCTGCTGAATGAAAAAC
GATCAGAAATATACCGGCTTGAAGCACGCCTGAAAGTTGGCATCATCCTGATCCCCAATATCTACATGGAGACACCCAAC
TACACGATTAACCGGCTGCGTCATGAGGATGTCAAATCAACAGAATTGCCGCCAAGCTATGGAATGGTGGAGAAAACCAC
TGAAGAAATCACACTGCCATCTACTTCACAAGAACTCAAGGCAATCCGGCCAAAAGCTGCCGTAACTGGTATCAAACCCG
AACAACCCGCACCAGTCCCAGAAGAAAAACCCCGGGAACAACTTTCATTCCTGGACAAATTTTTCAGTCTGTTCAGACCG
GCAAGCAGCAGTCGGGTAGAACCTGAACAGACAGCAGAGGAGTCCCAAGCTAGACCTCTCCGTAGCGAACGAGGCCGAAA
CAGGCGCGATCGAGGTCGCAACAAGCGTACAAAAAACAATATTCCGGGAACAACAGCAAGCGAGACATTACAGGAGGCAG
GCAATCTGCCGTCACTTGAACAATCAACTGGACATCCCGTTGAAAGCACGAGCAACGATGATCATCATCATAAAGCCAGC
CGGCAAGGGCAAGATCAGTTACAAGAATCGGGAGCGGAAAGTAATCTGCCTGATGCAACGACAACCGGAGAAGGCACAAC
GCCTGCAGGGGATTCTGTCAGTGAAAGAAAAACAGATAGGAGAGGCCGTTCACGCCGTCGTCGTGGAGGTCTGCATCGTG
ATCGGGAAGAGCGGACAGATGCAAATAAAACCACTGAACAGGGAGAGGTAACCCAGATTACAAGCAGTGAAAATAATGAG
CCAGTTGTACCTTCTGCTGATGGCAAGGAAGATAGGGAGCTTTCATTCCTGCCCCCCACAGAACCGACTCAGCATATTAC
GTCGATAGCATCAGTCGACGATATTACAGCAGAGCAGGAAGTGGCCTCTGCCAAGGTAATCGAGCCAATAAATACCGATG
CTGAATCAAATACTGGATCACAGGCTGCTTCGGAATCCCGTCAGCCAATCGAACTACCTGATCTCACCCAAAGTGGACTG
GTCATGATAGAAACAGCCCCGGATAAAATAGCCGAAGTACCAGAGGAAGCCTTGGCACCAGTCAAAAGGCCGCGTATCAG
ACCCAGCTACTTAGCGGAACCGGATACAACAAGTTCTGAACCTCTGGTACAAATAGAAACCAGAGATTGA

Upstream 100 bases:

>100_bases
CCAACACTCTGGCCACAGACAAATCTGTGCAAAAATACCAGGATGCCACACTGACAGTGAACGAAAGGTTTACCCGTACA
CCGAGCGCGGGAGACACTAA

Downstream 100 bases:

>100_bases
TACGCAACAGCTAAATGGCACTTTTAAAATAAGTGTGTCTATGATGACGAACGCGCCGACTGTAATAGTTAGCGTGTCCG
TCATTGTGCGGCCCATAAGA

Product: ribonuclease, Rne/Rng family protein

Products: NA

Alternate protein names: RNase E [H]

Number of amino acids: Translated: 849; Mature: 849

Protein sequence:

>849_residues
MKRMLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAFVDYGAGRHGFLPYKEIAPTCFDK
NTERSSHRIGELLREGQELIVQVDKDERGNKGAALTTYISLAGRYLVLMPNNPQGGGISRRVSAEERAELREVINHLQVP
DGMSIIARTAGIGRNEEELQWDLNYLVQLWRAIEGAASSERGVFLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQAY
QFMANVMPANVDRLKLYQDDIPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVSIDVNSARAIRGSDIENTALNT
NLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVETNLLKALRLDRARVQIGKISRFGLLELSRQRLRPSLGEGNYI
PCPRCHGTGHIRGTDSSALHILRIIQEEAMKEQTSMLQVQLPVDVATFLLNEKRSEIYRLEARLKVGIILIPNIYMETPN
YTINRLRHEDVKSTELPPSYGMVEKTTEEITLPSTSQELKAIRPKAAVTGIKPEQPAPVPEEKPREQLSFLDKFFSLFRP
ASSSRVEPEQTAEESQARPLRSERGRNRRDRGRNKRTKNNIPGTTASETLQEAGNLPSLEQSTGHPVESTSNDDHHHKAS
RQGQDQLQESGAESNLPDATTTGEGTTPAGDSVSERKTDRRGRSRRRRGGLHRDREERTDANKTTEQGEVTQITSSENNE
PVVPSADGKEDRELSFLPPTEPTQHITSIASVDDITAEQEVASAKVIEPINTDAESNTGSQAASESRQPIELPDLTQSGL
VMIETAPDKIAEVPEEALAPVKRPRIRPSYLAEPDTTSSEPLVQIETRD

Sequences:

>Translated_849_residues
MKRMLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAFVDYGAGRHGFLPYKEIAPTCFDK
NTERSSHRIGELLREGQELIVQVDKDERGNKGAALTTYISLAGRYLVLMPNNPQGGGISRRVSAEERAELREVINHLQVP
DGMSIIARTAGIGRNEEELQWDLNYLVQLWRAIEGAASSERGVFLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQAY
QFMANVMPANVDRLKLYQDDIPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVSIDVNSARAIRGSDIENTALNT
NLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVETNLLKALRLDRARVQIGKISRFGLLELSRQRLRPSLGEGNYI
PCPRCHGTGHIRGTDSSALHILRIIQEEAMKEQTSMLQVQLPVDVATFLLNEKRSEIYRLEARLKVGIILIPNIYMETPN
YTINRLRHEDVKSTELPPSYGMVEKTTEEITLPSTSQELKAIRPKAAVTGIKPEQPAPVPEEKPREQLSFLDKFFSLFRP
ASSSRVEPEQTAEESQARPLRSERGRNRRDRGRNKRTKNNIPGTTASETLQEAGNLPSLEQSTGHPVESTSNDDHHHKAS
RQGQDQLQESGAESNLPDATTTGEGTTPAGDSVSERKTDRRGRSRRRRGGLHRDREERTDANKTTEQGEVTQITSSENNE
PVVPSADGKEDRELSFLPPTEPTQHITSIASVDDITAEQEVASAKVIEPINTDAESNTGSQAASESRQPIELPDLTQSGL
VMIETAPDKIAEVPEEALAPVKRPRIRPSYLAEPDTTSSEPLVQIETRD
>Mature_849_residues
MKRMLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAFVDYGAGRHGFLPYKEIAPTCFDK
NTERSSHRIGELLREGQELIVQVDKDERGNKGAALTTYISLAGRYLVLMPNNPQGGGISRRVSAEERAELREVINHLQVP
DGMSIIARTAGIGRNEEELQWDLNYLVQLWRAIEGAASSERGVFLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQAY
QFMANVMPANVDRLKLYQDDIPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVSIDVNSARAIRGSDIENTALNT
NLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVETNLLKALRLDRARVQIGKISRFGLLELSRQRLRPSLGEGNYI
PCPRCHGTGHIRGTDSSALHILRIIQEEAMKEQTSMLQVQLPVDVATFLLNEKRSEIYRLEARLKVGIILIPNIYMETPN
YTINRLRHEDVKSTELPPSYGMVEKTTEEITLPSTSQELKAIRPKAAVTGIKPEQPAPVPEEKPREQLSFLDKFFSLFRP
ASSSRVEPEQTAEESQARPLRSERGRNRRDRGRNKRTKNNIPGTTASETLQEAGNLPSLEQSTGHPVESTSNDDHHHKAS
RQGQDQLQESGAESNLPDATTTGEGTTPAGDSVSERKTDRRGRSRRRRGGLHRDREERTDANKTTEQGEVTQITSSENNE
PVVPSADGKEDRELSFLPPTEPTQHITSIASVDDITAEQEVASAKVIEPINTDAESNTGSQAASESRQPIELPDLTQSGL
VMIETAPDKIAEVPEEALAPVKRPRIRPSYLAEPDTTSSEPLVQIETRD

Specific function: Matures 5S rRNA from its precursors from all the rRNA genes. Major endoribonuclease participating in mRNA turnover. It initiates the decay of RNAs by cutting them internally near their 5'-end. It is able to remove poly(A) tails by an endonucleolytic proce

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI1787325, Length=531, Percent_Identity=59.1337099811676, Blast_Score=623, Evalue=1e-179,
Organism=Escherichia coli, GI87082235, Length=427, Percent_Identity=37.9391100702576, Blast_Score=252, Evalue=8e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR021968
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF12111 PNPase_C; PF10150 RNase_E_G; PF00575 S1 [H]

EC number: =3.1.26.12 [H]

Molecular weight: Translated: 94900; Mature: 94900

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRMLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAFVDY
CCCCCCCCCCCCCEEEEEECCCEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHC
GAGRHGFLPYKEIAPTCFDKNTERSSHRIGELLREGQELIVQVDKDERGNKGAALTTYIS
CCCCCCCCCHHHHCCHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHH
LAGRYLVLMPNNPQGGGISRRVSAEERAELREVINHLQVPDGMSIIARTAGIGRNEEELQ
HHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHH
WDLNYLVQLWRAIEGAASSERGVFLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQAY
HHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
QFMANVMPANVDRLKLYQDDIPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVSI
HHHHHHCCCCCHHHEEECCCCCHHHHHHHHHHHHHHHCCEEECCCCCEEEEECCCEEEEE
DVNSARAIRGSDIENTALNTNLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVETN
ECCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHHCCHHHHHHH
LLKALRLDRARVQIGKISRFGLLELSRQRLRPSLGEGNYIPCPRCHGTGHIRGTDSSALH
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
ILRIIQEEAMKEQTSMLQVQLPVDVATFLLNEKRSEIYRLEARLKVGIILIPNIYMETPN
HHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCEEEECCC
YTINRLRHEDVKSTELPPSYGMVEKTTEEITLPSTSQELKAIRPKAAVTGIKPEQPAPVP
HHHHHHHHHCCCCCCCCCCCCCHHHCHHHEECCCCHHHHHHHCCHHHCCCCCCCCCCCCC
EEKPREQLSFLDKFFSLFRPASSSRVEPEQTAEESQARPLRSERGRNRRDRGRNKRTKNN
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHCCCHHHHCCCCCCCCC
IPGTTASETLQEAGNLPSLEQSTGHPVESTSNDDHHHKASRQGQDQLQESGAESNLPDAT
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
TTGEGTTPAGDSVSERKTDRRGRSRRRRGGLHRDREERTDANKTTEQGEVTQITSSENNE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCC
PVVPSADGKEDRELSFLPPTEPTQHITSIASVDDITAEQEVASAKVIEPINTDAESNTGS
CCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
QAASESRQPIELPDLTQSGLVMIETAPDKIAEVPEEALAPVKRPRIRPSYLAEPDTTSSE
HHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCC
PLVQIETRD
CEEEEECCC
>Mature Secondary Structure
MKRMLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAFVDY
CCCCCCCCCCCCCEEEEEECCCEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHC
GAGRHGFLPYKEIAPTCFDKNTERSSHRIGELLREGQELIVQVDKDERGNKGAALTTYIS
CCCCCCCCCHHHHCCHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHH
LAGRYLVLMPNNPQGGGISRRVSAEERAELREVINHLQVPDGMSIIARTAGIGRNEEELQ
HHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHH
WDLNYLVQLWRAIEGAASSERGVFLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQAY
HHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
QFMANVMPANVDRLKLYQDDIPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVSI
HHHHHHCCCCCHHHEEECCCCCHHHHHHHHHHHHHHHCCEEECCCCCEEEEECCCEEEEE
DVNSARAIRGSDIENTALNTNLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVETN
ECCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHHCCHHHHHHH
LLKALRLDRARVQIGKISRFGLLELSRQRLRPSLGEGNYIPCPRCHGTGHIRGTDSSALH
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
ILRIIQEEAMKEQTSMLQVQLPVDVATFLLNEKRSEIYRLEARLKVGIILIPNIYMETPN
HHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCEEEECCC
YTINRLRHEDVKSTELPPSYGMVEKTTEEITLPSTSQELKAIRPKAAVTGIKPEQPAPVP
HHHHHHHHHCCCCCCCCCCCCCHHHCHHHEECCCCHHHHHHHCCHHHCCCCCCCCCCCCC
EEKPREQLSFLDKFFSLFRPASSSRVEPEQTAEESQARPLRSERGRNRRDRGRNKRTKNN
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHCCCHHHHCCCCCCCCC
IPGTTASETLQEAGNLPSLEQSTGHPVESTSNDDHHHKASRQGQDQLQESGAESNLPDAT
CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
TTGEGTTPAGDSVSERKTDRRGRSRRRRGGLHRDREERTDANKTTEQGEVTQITSSENNE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCC
PVVPSADGKEDRELSFLPPTEPTQHITSIASVDDITAEQEVASAKVIEPINTDAESNTGS
CCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
QAASESRQPIELPDLTQSGLVMIETAPDKIAEVPEEALAPVKRPRIRPSYLAEPDTTSSE
HHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCC
PLVQIETRD
CEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]