Click here to switch to the map view.

The map label for this gene is exbD1 [H]

Identifier: 114331603

GI number: 114331603

Start: 1699292

End: 1699717

Strand: Direct

Name: exbD1 [H]

Synonym: Neut_1617

Alternate gene names: 114331603

Gene position: 1699292-1699717 (Clockwise)

Preceding gene: 114331602

Following gene: 114331606

Centisome position: 63.86

GC content: 46.01

Gene sequence:

>426_bases
ATGGCTTTCGGTGATTCAACCCGTTATCAGAGCAAGACGGCCATGACTGAAATCAACGTGGTACCGCTAGTGGATGTAAT
GCTGGTATTGCTGATTATTTTTATGATTACAGCCCCTTTGCTCACACACTCGGTAAAAGTTGATTTACCCAAGGCATCTA
GCACCCTCAATCAAACCCAACCGGAACATATTGAATTTGCCATACATGCAGATGGTAGTTTTTACTGGGGCGGAGAACCT
GTTACGCTGGATCAGCTACCTGCACGCTTTGCCGAGGCAGTTAAACAATCCGATAAAACTGAGTTACATATTCGTGCTGA
CCGTGACACACATTATGAATTGGTAACCAAGGTCATGAGTATTGCTGCTACGGCAGGGCTGGCACGCATTGGTTTTGTGA
CTGACCCAACCGAAAATCAACCCTGA

Upstream 100 bases:

>100_bases
AAACACCTCAAAAAGAAGCATCAACCATCTCACAGCATACCCGGGTAACAGAACCGACCAATCCATCAGCAGACGTTATC
AGCGGAGAGGGGCACCACTA

Downstream 100 bases:

>100_bases
CAAGGACTGGACTCATCCATAGAACAGGAATCGGATATGCAGTTAACCTCAAACCACCACACCCGCAGTTCAAACAACTT
CTTTCGCAGAAAGTGAGTTC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MAFGDSTRYQSKTAMTEINVVPLVDVMLVLLIIFMITAPLLTHSVKVDLPKASSTLNQTQPEHIEFAIHADGSFYWGGEP
VTLDQLPARFAEAVKQSDKTELHIRADRDTHYELVTKVMSIAATAGLARIGFVTDPTENQP

Sequences:

>Translated_141_residues
MAFGDSTRYQSKTAMTEINVVPLVDVMLVLLIIFMITAPLLTHSVKVDLPKASSTLNQTQPEHIEFAIHADGSFYWGGEP
VTLDQLPARFAEAVKQSDKTELHIRADRDTHYELVTKVMSIAATAGLARIGFVTDPTENQP
>Mature_140_residues
AFGDSTRYQSKTAMTEINVVPLVDVMLVLLIIFMITAPLLTHSVKVDLPKASSTLNQTQPEHIEFAIHADGSFYWGGEPV
TLDQLPARFAEAVKQSDKTELHIRADRDTHYELVTKVMSIAATAGLARIGFVTDPTENQP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=138, Percent_Identity=39.1304347826087, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15554; Mature: 15423

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGDSTRYQSKTAMTEINVVPLVDVMLVLLIIFMITAPLLTHSVKVDLPKASSTLNQTQ
CCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHCCCC
PEHIEFAIHADGSFYWGGEPVTLDQLPARFAEAVKQSDKTELHIRADRDTHYELVTKVMS
CCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
IAATAGLARIGFVTDPTENQP
HHHHHHHHHCCCEECCCCCCC
>Mature Secondary Structure 
AFGDSTRYQSKTAMTEINVVPLVDVMLVLLIIFMITAPLLTHSVKVDLPKASSTLNQTQ
CCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHCCCC
PEHIEFAIHADGSFYWGGEPVTLDQLPARFAEAVKQSDKTELHIRADRDTHYELVTKVMS
CCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
IAATAGLARIGFVTDPTENQP
HHHHHHHHHCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]