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The map label for this gene is ybbK [C]

Identifier: 113477598

GI number: 113477598

Start: 6443191

End: 6444000

Strand: Reverse

Name: ybbK [C]

Synonym: Tery_4181

Alternate gene names: 113477598

Gene position: 6444000-6443191 (Counterclockwise)

Preceding gene: 113477599

Following gene: 113477595

Centisome position: 83.15

GC content: 35.19

Gene sequence:

>810_bases
ATGCTCCAATATATTATTCCTGTGATAGCAACCGCAATTGTTAGTTATACAGTTAACTCCTCAGTAAAAGTTATTAGCCA
AGGGGATGAAGCGTTAGTAGAACGCTTAGGTAAATATAGACGTACTTTAAAGCCAGGACTTCAGTTTGTTGTACCCCTAG
TAGAGAGAATAACTTATGTTGATACAATTCGTGAACGAGTTTTGGATATTCCTGAGCAGTCAGTTATTACTAATGATAAC
TTGACTTTGAAAGTAGATGCAGTACTGTACTGGCAGATCATAGACATAGAGAGAGCGTATTATGCAATTGAAAATGTAGA
AAATGCTATTCAAGAAATTGTTTTAACTTCTCTGCGTTCTCAAATTGGTCGCTTGCCATTGCGACAAGTTTTGTCTACAA
AAGATGATATTGATAAAGCCTTGCTGAAAAAATTAGATGAAGCAACTTATAACTGGGGGGTAAAAGTGATTCGTGTTGAG
ATTCAGAATATTGTTTTTCCTGAAAAATTGCGAATAGCGATGGAGTCGGAAAGAGTAGCTTTAAGTCAGAAGCAAACTGT
TCTTTCTAAAGCTCAAGCAGAGGCAGAGTCTATCAAGCTTCTTTCTGAAACTTTAAACTTGTCTCCAGACAGTCCGGAAT
TTATAAAATTTCTGATTGCTCAAAGATACATAGAAATTAATCATAAATTAAGTGAAAGTGCTAATTCTAAAGTAGTATTT
ATGCACCCGAGGACTATGTCAGAAGGAGTGGGTGAATTAATTGGAGAATATCCTGATGATGGTGAAATAGAACTAAAAAA
AGTTGATTAA

Upstream 100 bases:

>100_bases
TTTACAAATAGGGAAAAATTTTTGTCTCTAAAATTCTACTTCCTAGTCTCAAGAAAATGCTAGGATTAAGAAAATTAACC
ATTATTCTCAACCCTAAATT

Downstream 100 bases:

>100_bases
TATCAACTCAAAAGCGAGGTGCGAAGCGCCAAGCGTAACGCACCATAATCTTAACTAAGGTTTAGGAGAAGTCCCTAATT
TCCAGTCAACATAAAGATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MLQYIIPVIATAIVSYTVNSSVKVISQGDEALVERLGKYRRTLKPGLQFVVPLVERITYVDTIRERVLDIPEQSVITNDN
LTLKVDAVLYWQIIDIERAYYAIENVENAIQEIVLTSLRSQIGRLPLRQVLSTKDDIDKALLKKLDEATYNWGVKVIRVE
IQNIVFPEKLRIAMESERVALSQKQTVLSKAQAEAESIKLLSETLNLSPDSPEFIKFLIAQRYIEINHKLSESANSKVVF
MHPRTMSEGVGELIGEYPDDGEIELKKVD

Sequences:

>Translated_269_residues
MLQYIIPVIATAIVSYTVNSSVKVISQGDEALVERLGKYRRTLKPGLQFVVPLVERITYVDTIRERVLDIPEQSVITNDN
LTLKVDAVLYWQIIDIERAYYAIENVENAIQEIVLTSLRSQIGRLPLRQVLSTKDDIDKALLKKLDEATYNWGVKVIRVE
IQNIVFPEKLRIAMESERVALSQKQTVLSKAQAEAESIKLLSETLNLSPDSPEFIKFLIAQRYIEINHKLSESANSKVVF
MHPRTMSEGVGELIGEYPDDGEIELKKVD
>Mature_269_residues
MLQYIIPVIATAIVSYTVNSSVKVISQGDEALVERLGKYRRTLKPGLQFVVPLVERITYVDTIRERVLDIPEQSVITNDN
LTLKVDAVLYWQIIDIERAYYAIENVENAIQEIVLTSLRSQIGRLPLRQVLSTKDDIDKALLKKLDEATYNWGVKVIRVE
IQNIVFPEKLRIAMESERVALSQKQTVLSKAQAEAESIKLLSETLNLSPDSPEFIKFLIAQRYIEINHKLSESANSKVVF
MHPRTMSEGVGELIGEYPDDGEIELKKVD

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=179, Percent_Identity=32.9608938547486, Blast_Score=133, Evalue=2e-31,
Organism=Homo sapiens, GI38016911, Length=232, Percent_Identity=30.6034482758621, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI221316744, Length=233, Percent_Identity=29.6137339055794, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI21686995, Length=233, Percent_Identity=29.6137339055794, Blast_Score=104, Evalue=6e-23,
Organism=Homo sapiens, GI7657615, Length=233, Percent_Identity=25.7510729613734, Blast_Score=80, Evalue=2e-15,
Organism=Escherichia coli, GI1786697, Length=295, Percent_Identity=34.5762711864407, Blast_Score=159, Evalue=2e-40,
Organism=Caenorhabditis elegans, GI32564147, Length=201, Percent_Identity=28.8557213930348, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17569499, Length=249, Percent_Identity=31.3253012048193, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI71989948, Length=225, Percent_Identity=31.1111111111111, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI71987621, Length=249, Percent_Identity=29.3172690763052, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71987612, Length=249, Percent_Identity=29.3172690763052, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI25153583, Length=249, Percent_Identity=29.3172690763052, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17569493, Length=238, Percent_Identity=26.0504201680672, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI193209764, Length=238, Percent_Identity=26.0504201680672, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI32566490, Length=222, Percent_Identity=30.6306306306306, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17570459, Length=248, Percent_Identity=29.4354838709677, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17570161, Length=236, Percent_Identity=27.1186440677966, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI193210507, Length=236, Percent_Identity=27.1186440677966, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71989955, Length=156, Percent_Identity=33.974358974359, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17569497, Length=225, Percent_Identity=26.2222222222222, Blast_Score=86, Evalue=1e-17,
Organism=Drosophila melanogaster, GI45550506, Length=185, Percent_Identity=33.5135135135135, Blast_Score=133, Evalue=1e-31,
Organism=Drosophila melanogaster, GI62484448, Length=230, Percent_Identity=30.4347826086957, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI62484274, Length=230, Percent_Identity=30.4347826086957, Blast_Score=111, Evalue=5e-25,
Organism=Drosophila melanogaster, GI281365664, Length=223, Percent_Identity=31.390134529148, Blast_Score=111, Evalue=6e-25,
Organism=Drosophila melanogaster, GI24657857, Length=230, Percent_Identity=30.4347826086957, Blast_Score=110, Evalue=9e-25,
Organism=Drosophila melanogaster, GI45556022, Length=223, Percent_Identity=32.2869955156951, Blast_Score=107, Evalue=8e-24,
Organism=Drosophila melanogaster, GI28573263, Length=233, Percent_Identity=27.0386266094421, Blast_Score=103, Evalue=9e-23,
Organism=Drosophila melanogaster, GI18860517, Length=224, Percent_Identity=29.0178571428571, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI281361631, Length=229, Percent_Identity=24.0174672489083, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI281361633, Length=229, Percent_Identity=24.0174672489083, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI21356845, Length=192, Percent_Identity=25.5208333333333, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI281361635, Length=181, Percent_Identity=23.7569060773481, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 30571; Mature: 30571

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQYIIPVIATAIVSYTVNSSVKVISQGDEALVERLGKYRRTLKPGLQFVVPLVERITYV
CHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTIRERVLDIPEQSVITNDNLTLKVDAVLYWQIIDIERAYYAIENVENAIQEIVLTSLRS
HHHHHHHHCCCCHHEEECCCEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
QIGRLPLRQVLSTKDDIDKALLKKLDEATYNWGVKVIRVEIQNIVFPEKLRIAMESERVA
HHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEEEEHHHCCCHHHHHHHHHHHHHH
LSQKQTVLSKAQAEAESIKLLSETLNLSPDSPEFIKFLIAQRYIEINHKLSESANSKVVF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
MHPRTMSEGVGELIGEYPDDGEIELKKVD
ECCCHHHHHHHHHHCCCCCCCCEEEEECC
>Mature Secondary Structure
MLQYIIPVIATAIVSYTVNSSVKVISQGDEALVERLGKYRRTLKPGLQFVVPLVERITYV
CHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTIRERVLDIPEQSVITNDNLTLKVDAVLYWQIIDIERAYYAIENVENAIQEIVLTSLRS
HHHHHHHHCCCCHHEEECCCEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
QIGRLPLRQVLSTKDDIDKALLKKLDEATYNWGVKVIRVEIQNIVFPEKLRIAMESERVA
HHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEEEEHHHCCCHHHHHHHHHHHHHH
LSQKQTVLSKAQAEAESIKLLSETLNLSPDSPEFIKFLIAQRYIEINHKLSESANSKVVF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
MHPRTMSEGVGELIGEYPDDGEIELKKVD
ECCCHHHHHHHHHHCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]