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The map label for this gene is pdxJ

Identifier: 113477595

GI number: 113477595

Start: 6438869

End: 6439591

Strand: Reverse

Name: pdxJ

Synonym: Tery_4177

Alternate gene names: 113477595

Gene position: 6439591-6438869 (Counterclockwise)

Preceding gene: 113477598

Following gene: 113477594

Centisome position: 83.09

GC content: 44.12

Gene sequence:

>723_bases
TTGCCCACTCTTGGCGTCAATATAGATCATGTTGCTACAATTAGACAAGCGCGACAAACTGTAGAACCTGACCCGGTAGC
AGCAGCAGTTTTAGCTGAACTAGCTGGTGCTGATGGCATTACTGTCCATCTACGGGAAGATCGTCGCCACATTCAAGAAC
GAGATGTCCATATTCTCCGACAAACAGTGCAGACTCATTTGAATCTCGAAATGGCCCCTACTGATGAAATGGTGGCGATC
GCTCTGGAAATTAAACCGGACTATATTACTCTGGTACCAGAACGCCGAGAAGAAGTGACGACAGAAGGTGGTTTAGATGT
AGCAGGAAATCTCTCCCAAATGAGGAAAGTTGTAGCCCAGTTACAAGGAGTGGGTATTCCTGTGAGTATGTTTATTGATC
CCGAAAGACTACAGATAGAAGCTTCCGCCCAAATTGAGGCCAAGTTTATTGAACTCCATACAGGATCTTATGCTGAAGCT
AAAAATGAGGCCACACGCCACAAAGAATTAACTATTTTGGCAGATGGATGCAACATAGCTATTAATCATGGTCTTCGGGT
AAATGCTGGACATGGCCTCACTTATGAGAATGTTTATTCAGTTGCTTGTCTAAAAGGCATGGAAGAACTCAACATTGGTC
ATACAATTGTTTCTAAGGCGGTACTCGTGGGTATGGAGCGAGCTGTCCGTGAAATGAAGCTTGCTATTAATGGCAAGTTC
TAA

Upstream 100 bases:

>100_bases
GGTTCCCTTACCCCTTACACCGCTGTACCTAAATAGGTATTTTGGGAGATGTTTTATATAATAGGGATATGATGCTTAAA
TTAATCAGGAGAAGAAAAAA

Downstream 100 bases:

>100_bases
TTACTAATTTCAATTTATAAAAAATTGATGCAAATGAAAACTTATTATTACGTCTTAGCTAGTAAAAAATTTTTACTTGA
GGAAGAACCCCTAGAAGAAG

Product: pyridoxine 5'-phosphate synthase

Products: NA

Alternate protein names: PNP synthase

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MPTLGVNIDHVATIRQARQTVEPDPVAAAVLAELAGADGITVHLREDRRHIQERDVHILRQTVQTHLNLEMAPTDEMVAI
ALEIKPDYITLVPERREEVTTEGGLDVAGNLSQMRKVVAQLQGVGIPVSMFIDPERLQIEASAQIEAKFIELHTGSYAEA
KNEATRHKELTILADGCNIAINHGLRVNAGHGLTYENVYSVACLKGMEELNIGHTIVSKAVLVGMERAVREMKLAINGKF

Sequences:

>Translated_240_residues
MPTLGVNIDHVATIRQARQTVEPDPVAAAVLAELAGADGITVHLREDRRHIQERDVHILRQTVQTHLNLEMAPTDEMVAI
ALEIKPDYITLVPERREEVTTEGGLDVAGNLSQMRKVVAQLQGVGIPVSMFIDPERLQIEASAQIEAKFIELHTGSYAEA
KNEATRHKELTILADGCNIAINHGLRVNAGHGLTYENVYSVACLKGMEELNIGHTIVSKAVLVGMERAVREMKLAINGKF
>Mature_239_residues
PTLGVNIDHVATIRQARQTVEPDPVAAAVLAELAGADGITVHLREDRRHIQERDVHILRQTVQTHLNLEMAPTDEMVAIA
LEIKPDYITLVPERREEVTTEGGLDVAGNLSQMRKVVAQLQGVGIPVSMFIDPERLQIEASAQIEAKFIELHTGSYAEAK
NEATRHKELTILADGCNIAINHGLRVNAGHGLTYENVYSVACLKGMEELNIGHTIVSKAVLVGMERAVREMKLAINGKF

Specific function: Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate

COG id: COG0854

COG function: function code H; Pyridoxal phosphate biosynthesis protein

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PNP synthase family

Homologues:

Organism=Escherichia coli, GI1788917, Length=230, Percent_Identity=60, Blast_Score=280, Evalue=4e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PDXJ_TRIEI (Q10X41)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_723656.1
- ProteinModelPortal:   Q10X41
- SMR:   Q10X41
- STRING:   Q10X41
- GeneID:   4245829
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_4177
- NMPDR:   fig|203124.1.peg.5361
- eggNOG:   COG0854
- HOGENOM:   HBG299314
- OMA:   AGHGLNY
- PhylomeDB:   Q10X41
- ProtClustDB:   PRK05265
- BioCyc:   TERY203124:TERY_4177-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00279
- InterPro:   IPR013785
- InterPro:   IPR004569
- Gene3D:   G3DSA:3.20.20.70
- TIGRFAMs:   TIGR00559

Pfam domain/function: PF03740 PdxJ; SSF63892 PyrdxlP_synth_PdxJ

EC number: =2.6.99.2

Molecular weight: Translated: 26333; Mature: 26201

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: ACT_SITE 43-43 ACT_SITE 70-70 ACT_SITE 191-191 BINDING 7-7 BINDING 18-18 BINDING 45-45 BINDING 50-50 BINDING 100-100 BINDING 192-192

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTLGVNIDHVATIRQARQTVEPDPVAAAVLAELAGADGITVHLREDRRHIQERDVHILR
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHH
QTVQTHLNLEMAPTDEMVAIALEIKPDYITLVPERREEVTTEGGLDVAGNLSQMRKVVAQ
HHHHHHCCEEECCCCCEEEEEEEECCCEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHH
LQGVGIPVSMFIDPERLQIEASAQIEAKFIELHTGSYAEAKNEATRHKELTILADGCNIA
HHCCCCEEEEEECHHHEEEEECCEEEEEEEEEECCCCHHHHHHHHCCEEEEEEECCCEEE
INHGLRVNAGHGLTYENVYSVACLKGMEELNIGHTIVSKAVLVGMERAVREMKLAINGKF
EECCEEEECCCCCCHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHEECCCC
>Mature Secondary Structure 
PTLGVNIDHVATIRQARQTVEPDPVAAAVLAELAGADGITVHLREDRRHIQERDVHILR
CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHH
QTVQTHLNLEMAPTDEMVAIALEIKPDYITLVPERREEVTTEGGLDVAGNLSQMRKVVAQ
HHHHHHCCEEECCCCCEEEEEEEECCCEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHH
LQGVGIPVSMFIDPERLQIEASAQIEAKFIELHTGSYAEAKNEATRHKELTILADGCNIA
HHCCCCEEEEEECHHHEEEEECCEEEEEEEEEECCCCHHHHHHHHCCEEEEEEECCCEEE
INHGLRVNAGHGLTYENVYSVACLKGMEELNIGHTIVSKAVLVGMERAVREMKLAINGKF
EECCEEEECCCCCCHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA