| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is murB [H]
Identifier: 113477458
GI number: 113477458
Start: 6226077
End: 6227024
Strand: Reverse
Name: murB [H]
Synonym: Tery_4028
Alternate gene names: 113477458
Gene position: 6227024-6226077 (Counterclockwise)
Preceding gene: 113477459
Following gene: 113477457
Centisome position: 80.35
GC content: 40.61
Gene sequence:
>948_bases ATGACTCTTTCTTATCACATAGCTAGTTCAGAAAAAATGCCACAAAGACAACCTATTCCCTTGTTAGGAAAAGACTGTGT AATTAAGTCTAATGTTCCTCTGGCACCTCTAACGTCTTTCCGCGTTGGAGGGCCTGCTGAATGGTATGTTACACCAAAAA GATTAGATCAACTACAAGCTAGTTTTCAGTTTGCTAACTATAAAGGATTACCAATAACTTTTCTAGGAGCAGGATCTAAT ATACTAGTCAGCGATAGTGGTTTATCTGGATTAGTTATTGGCAGCCGTTATCTCCGTCACATCTCCTTTGAACAAGAAAC AGGTCTTCTTAGTGTAGGAGCAGGTGAGTTTTTGCCACGTCTTGCTTGGAAGGCAGCTAGAATGGGTTGGCAAGGTTTAG AATGGGCCGTTGGTATCCCTGGCACTGTTGGTGGTGCTGTGGTGATGAATGCTGGGGCACAAGGTAAATGTATGGCTGAT GTATTAGTGAATGCCCATGTTATTTTACCTAATGGTGAGATAGATATTTTGTCTCCTCAAGATTTGGAATACAATTACCG CTATTCTAAATTGCAAGGTAAATCTATTTTGGTCGCTCAAGCTACATTTCAGTTACAACCGGGAGAAAAGCCTGCCTTAA TAACGGCCATAACTTCTGAAAATTTTCAGAAGCGAAAAAGTACCCAGCCTTATCATTTACCTAGCTGTGGTAGTGTTTTT CGGAATCCTGGACCAAAGACTGCTGGTTGGTTAATTGAACAAGCTGGACTTAAGGGCTATCAAATAGGTATGGCCCAAGT TGCTCACCGCCATGCTAACTTTATTCTGAACTGTGGTGGAGCTACAGCTAACGAAATTTTACAGCTAATTTACCATGTTC AAGAACAGGTGGAAAAGCAATGGTCTTTGTTATTAAAACCAGAGGTAAAATTTGTGGGAGATTTTTAA
Upstream 100 bases:
>100_bases GCAAAATATTTCGGCACGGAAATGGTAAAAGCTGATAGGTAGTTAACTAACTTCAAAACAAACTCCTTAAATTACGATAA TTCAAGCATTAGTTATCACC
Downstream 100 bases:
>100_bases GAAGTAGCAAGCTTATAATTACAATAAAGCATAGCTTTTGTTTGACAATAGTTGTATAATTTAGGACCACAAATAAACTA CATAAAATCTATAAATTATC
Product: UDP-N-acetylmuramate dehydrogenase
Products: NA
Alternate protein names: UDP-N-acetylmuramate dehydrogenase [H]
Number of amino acids: Translated: 315; Mature: 314
Protein sequence:
>315_residues MTLSYHIASSEKMPQRQPIPLLGKDCVIKSNVPLAPLTSFRVGGPAEWYVTPKRLDQLQASFQFANYKGLPITFLGAGSN ILVSDSGLSGLVIGSRYLRHISFEQETGLLSVGAGEFLPRLAWKAARMGWQGLEWAVGIPGTVGGAVVMNAGAQGKCMAD VLVNAHVILPNGEIDILSPQDLEYNYRYSKLQGKSILVAQATFQLQPGEKPALITAITSENFQKRKSTQPYHLPSCGSVF RNPGPKTAGWLIEQAGLKGYQIGMAQVAHRHANFILNCGGATANEILQLIYHVQEQVEKQWSLLLKPEVKFVGDF
Sequences:
>Translated_315_residues MTLSYHIASSEKMPQRQPIPLLGKDCVIKSNVPLAPLTSFRVGGPAEWYVTPKRLDQLQASFQFANYKGLPITFLGAGSN ILVSDSGLSGLVIGSRYLRHISFEQETGLLSVGAGEFLPRLAWKAARMGWQGLEWAVGIPGTVGGAVVMNAGAQGKCMAD VLVNAHVILPNGEIDILSPQDLEYNYRYSKLQGKSILVAQATFQLQPGEKPALITAITSENFQKRKSTQPYHLPSCGSVF RNPGPKTAGWLIEQAGLKGYQIGMAQVAHRHANFILNCGGATANEILQLIYHVQEQVEKQWSLLLKPEVKFVGDF >Mature_314_residues TLSYHIASSEKMPQRQPIPLLGKDCVIKSNVPLAPLTSFRVGGPAEWYVTPKRLDQLQASFQFANYKGLPITFLGAGSNI LVSDSGLSGLVIGSRYLRHISFEQETGLLSVGAGEFLPRLAWKAARMGWQGLEWAVGIPGTVGGAVVMNAGAQGKCMADV LVNAHVILPNGEIDILSPQDLEYNYRYSKLQGKSILVAQATFQLQPGEKPALITAITSENFQKRKSTQPYHLPSCGSVFR NPGPKTAGWLIEQAGLKGYQIGMAQVAHRHANFILNCGGATANEILQLIYHVQEQVEKQWSLLLKPEVKFVGDF
Specific function: Cell wall formation [H]
COG id: COG0812
COG function: function code M; UDP-N-acetylmuramate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding PCMH-type domain [H]
Homologues:
Organism=Escherichia coli, GI1790407, Length=330, Percent_Identity=28.1818181818182, Blast_Score=104, Evalue=9e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016169 - InterPro: IPR016166 - InterPro: IPR016167 - InterPro: IPR003170 - InterPro: IPR011601 - InterPro: IPR006094 [H]
Pfam domain/function: PF01565 FAD_binding_4; PF02873 MurB_C [H]
EC number: =1.1.1.158 [H]
Molecular weight: Translated: 34345; Mature: 34214
Theoretical pI: Translated: 9.27; Mature: 9.27
Prosite motif: PS00012 PHOSPHOPANTETHEINE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLSYHIASSEKMPQRQPIPLLGKDCVIKSNVPLAPLTSFRVGGPAEWYVTPKRLDQLQA CEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHH SFQFANYKGLPITFLGAGSNILVSDSGLSGLVIGSRYLRHISFEQETGLLSVGAGEFLPR HHHCCCCCCCCEEEEECCCEEEEECCCCCEEEEHHHHHHHCCCCCCCCEEEECCHHHHHH LAWKAARMGWQGLEWAVGIPGTVGGAVVMNAGAQGKCMADVLVNAHVILPNGEIDILSPQ HHHHHHHCCCCCCEEEEECCCCCCCEEEEECCCCCCCCEEEEEEEEEEECCCCEEEECCC DLEYNYRYSKLQGKSILVAQATFQLQPGEKPALITAITSENFQKRKSTQPYHLPSCGSVF CCCCCEEEEEECCCEEEEEEEEEEECCCCCCEEEEEECCCCHHHHHCCCCCCCCCHHHHH RNPGPKTAGWLIEQAGLKGYQIGMAQVAHRHANFILNCGGATANEILQLIYHVQEQVEKQ CCCCCCCHHHHHHHCCCCCEEEHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHH WSLLLKPEVKFVGDF HHEEECCCEEEECCC >Mature Secondary Structure TLSYHIASSEKMPQRQPIPLLGKDCVIKSNVPLAPLTSFRVGGPAEWYVTPKRLDQLQA EEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHH SFQFANYKGLPITFLGAGSNILVSDSGLSGLVIGSRYLRHISFEQETGLLSVGAGEFLPR HHHCCCCCCCCEEEEECCCEEEEECCCCCEEEEHHHHHHHCCCCCCCCEEEECCHHHHHH LAWKAARMGWQGLEWAVGIPGTVGGAVVMNAGAQGKCMADVLVNAHVILPNGEIDILSPQ HHHHHHHCCCCCCEEEEECCCCCCCEEEEECCCCCCCCEEEEEEEEEEECCCCEEEECCC DLEYNYRYSKLQGKSILVAQATFQLQPGEKPALITAITSENFQKRKSTQPYHLPSCGSVF CCCCCEEEEEECCCEEEEEEEEEEECCCCCCEEEEEECCCCHHHHHCCCCCCCCCHHHHH RNPGPKTAGWLIEQAGLKGYQIGMAQVAHRHANFILNCGGATANEILQLIYHVQEQVEKQ CCCCCCCHHHHHHHCCCCCEEEHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHH WSLLLKPEVKFVGDF HHEEECCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA