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The map label for this gene is pds [H]

Identifier: 113477443

GI number: 113477443

Start: 6202952

End: 6204331

Strand: Reverse

Name: pds [H]

Synonym: Tery_4011

Alternate gene names: 113477443

Gene position: 6204331-6202952 (Counterclockwise)

Preceding gene: 113477446

Following gene: 113477442

Centisome position: 80.05

GC content: 41.16

Gene sequence:

>1380_bases
ATGCTAGTGGCAATCGCGGGAGCAGGTCTAGCAGGTCTTTCCTGTGCTAAATATTTGACAGATCTGGGCCATACCCCAAT
AGTCCTTGAAAGAAGGGACGTTCTTGGAGGTAAAGTAGCAGCCTGGAAGGACGAGGAGGGAGACTGGTACGAAACTGGTC
TACATATATTCTTTGGAGCTTATCCAAATATGTTACAGCTATTTAAAGAGTTGGATATACAGGATAGGTTGCAATGGAAA
GACCACACAATGATTTTTAATCAGCCAGATCAACCAGGAACATATTCTAGGTTTGATTTTCCCAATATTCCAGCACCAGT
AAATGGCATAGCGGCAATTCTGGGCAATAATGATATGCTAACCTGGTTAGAAAAAATTAAGTTTGGCATAGGTTTAATTC
CAGCTATGCTTCAAGGACAAAAATATGTAGAAAAAATGGACAAATACAGTTTTTCAGAATGGCTGAAAAAACAAAATGTC
CCTCCAAAAGTGGAGAAAGAAGTCTTCATCGCCATGTCAAAAGCATTGAATTTTATCGGGCCAGAAGAAATATCCTCAAC
TGTTATTCTCACGGCTCTAAACCGTTTCCTCCAAGAGAAAAATGGTTCTAAAATGGCTTTTTTAGATGGTTCACCCACGG
AGCGATTATGTCAACCTCTGGTAGAATATATTACTAAGGGAGGTGGGGAAGTATATCTAAACTCACCTATAAAAGAGTTT
TTGCTGAACGACGATGGCACAGTTAGTGGATTCCTCATTAGAGGATTAGAAGCAGCAGAAGATAGAGTTATAAGTGTTGA
TGCTTATGTCTCAGCAATGCCCGTGGATCCCTTAAAGGTAATGTTACCATTACCCTGGCAACAGATGGAATATTTCCAAA
AGCTCAAGGGTTTAGAAGGGGTACCAGTAATTAATCTGCATTTGTGGTTTGATCGCAAGCTCACAGATATAGATCATTTA
CTATTTTCACGCTCACCCCTACTCAGTGTTTATGCAGACATGAGTAATACCTGTCGCGAATATGCTAATCCCAATTGTTC
CATGTTGGAGCTAGTATTAGCACCAGCTAAAGATTGGATTAGTAAATCTGAGCAAGAAATAGTCGCAGCAACAATGGCAG
AGTTAGAAAAATTATTTCCGGCTCACTTTACAGGAGAAGATCCAGCTAAGTTGTTGAAATATCACGTCGTCAAAACACCC
CGCTCTGTATATAAAGCTACCCCAGGTCGTCAAGACTGTCGCCCTTCTCAAGTAACTCCAATTGCCAATTTCTTCCTTAC
AGGAGATTATACAATGCAACGCTATCTAGCTAGCATGGAAGGAGCCGTACTTTCTGGCAAGCTGACAGCGCAGGCGATCG
CAAAAGCAAAGCTACCCTAA

Upstream 100 bases:

>100_bases
AAATCAAAAATAACTTAATCAGGTCTTGCTGAATTGTGTAACAACTTGTAAAGTTATAATAAAAATAAGTAAATTTATTT
AAGAGGTTTTTACCAAATAA

Downstream 100 bases:

>100_bases
AGCTTCTATTTACCCTGAATCTCATGCAAATCTGCAACGAACAACTCCAAAGCCAGCAAAGAATGCTGCCAAGCTCTAAA
TCTTCTCAGCGTATGACTTG

Product: zeta-carotene desaturase / three-step phytoene desaturase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MLVAIAGAGLAGLSCAKYLTDLGHTPIVLERRDVLGGKVAAWKDEEGDWYETGLHIFFGAYPNMLQLFKELDIQDRLQWK
DHTMIFNQPDQPGTYSRFDFPNIPAPVNGIAAILGNNDMLTWLEKIKFGIGLIPAMLQGQKYVEKMDKYSFSEWLKKQNV
PPKVEKEVFIAMSKALNFIGPEEISSTVILTALNRFLQEKNGSKMAFLDGSPTERLCQPLVEYITKGGGEVYLNSPIKEF
LLNDDGTVSGFLIRGLEAAEDRVISVDAYVSAMPVDPLKVMLPLPWQQMEYFQKLKGLEGVPVINLHLWFDRKLTDIDHL
LFSRSPLLSVYADMSNTCREYANPNCSMLELVLAPAKDWISKSEQEIVAATMAELEKLFPAHFTGEDPAKLLKYHVVKTP
RSVYKATPGRQDCRPSQVTPIANFFLTGDYTMQRYLASMEGAVLSGKLTAQAIAKAKLP

Sequences:

>Translated_459_residues
MLVAIAGAGLAGLSCAKYLTDLGHTPIVLERRDVLGGKVAAWKDEEGDWYETGLHIFFGAYPNMLQLFKELDIQDRLQWK
DHTMIFNQPDQPGTYSRFDFPNIPAPVNGIAAILGNNDMLTWLEKIKFGIGLIPAMLQGQKYVEKMDKYSFSEWLKKQNV
PPKVEKEVFIAMSKALNFIGPEEISSTVILTALNRFLQEKNGSKMAFLDGSPTERLCQPLVEYITKGGGEVYLNSPIKEF
LLNDDGTVSGFLIRGLEAAEDRVISVDAYVSAMPVDPLKVMLPLPWQQMEYFQKLKGLEGVPVINLHLWFDRKLTDIDHL
LFSRSPLLSVYADMSNTCREYANPNCSMLELVLAPAKDWISKSEQEIVAATMAELEKLFPAHFTGEDPAKLLKYHVVKTP
RSVYKATPGRQDCRPSQVTPIANFFLTGDYTMQRYLASMEGAVLSGKLTAQAIAKAKLP
>Mature_459_residues
MLVAIAGAGLAGLSCAKYLTDLGHTPIVLERRDVLGGKVAAWKDEEGDWYETGLHIFFGAYPNMLQLFKELDIQDRLQWK
DHTMIFNQPDQPGTYSRFDFPNIPAPVNGIAAILGNNDMLTWLEKIKFGIGLIPAMLQGQKYVEKMDKYSFSEWLKKQNV
PPKVEKEVFIAMSKALNFIGPEEISSTVILTALNRFLQEKNGSKMAFLDGSPTERLCQPLVEYITKGGGEVYLNSPIKEF
LLNDDGTVSGFLIRGLEAAEDRVISVDAYVSAMPVDPLKVMLPLPWQQMEYFQKLKGLEGVPVINLHLWFDRKLTDIDHL
LFSRSPLLSVYADMSNTCREYANPNCSMLELVLAPAKDWISKSEQEIVAATMAELEKLFPAHFTGEDPAKLLKYHVVKTP
RSVYKATPGRQDCRPSQVTPIANFFLTGDYTMQRYLASMEGAVLSGKLTAQAIAKAKLP

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001613
- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: 1.3.99.-

Molecular weight: Translated: 51368; Mature: 51368

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVAIAGAGLAGLSCAKYLTDLGHTPIVLERRDVLGGKVAAWKDEEGDWYETGLHIFFGA
CEEEEECCCHHHHHHHHHHHHCCCCCEEEECCHHCCCCEEEEECCCCCHHHHCCCEEECC
YPNMLQLFKELDIQDRLQWKDHTMIFNQPDQPGTYSRFDFPNIPAPVNGIAAILGNNDML
CHHHHHHHHHCCHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHH
TWLEKIKFGIGLIPAMLQGQKYVEKMDKYSFSEWLKKQNVPPKVEKEVFIAMSKALNFIG
HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
PEEISSTVILTALNRFLQEKNGSKMAFLDGSPTERLCQPLVEYITKGGGEVYLNSPIKEF
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCHHHH
LLNDDGTVSGFLIRGLEAAEDRVISVDAYVSAMPVDPLKVMLPLPWQQMEYFQKLKGLEG
HCCCCCCCHHHHHHCCHHHCCCEEEEEHHHCCCCCCCHHEEECCCHHHHHHHHHHCCCCC
VPVINLHLWFDRKLTDIDHLLFSRSPLLSVYADMSNTCREYANPNCSMLELVLAPAKDWI
CCEEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHH
SKSEQEIVAATMAELEKLFPAHFTGEDPAKLLKYHVVKTPRSVYKATPGRQDCRPSQVTP
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCH
IANFFLTGDYTMQRYLASMEGAVLSGKLTAQAIAKAKLP
HHHEEECCCHHHHHHHHHHCCCEEECHHHHHHHHHCCCC
>Mature Secondary Structure
MLVAIAGAGLAGLSCAKYLTDLGHTPIVLERRDVLGGKVAAWKDEEGDWYETGLHIFFGA
CEEEEECCCHHHHHHHHHHHHCCCCCEEEECCHHCCCCEEEEECCCCCHHHHCCCEEECC
YPNMLQLFKELDIQDRLQWKDHTMIFNQPDQPGTYSRFDFPNIPAPVNGIAAILGNNDML
CHHHHHHHHHCCHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHH
TWLEKIKFGIGLIPAMLQGQKYVEKMDKYSFSEWLKKQNVPPKVEKEVFIAMSKALNFIG
HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
PEEISSTVILTALNRFLQEKNGSKMAFLDGSPTERLCQPLVEYITKGGGEVYLNSPIKEF
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCHHHH
LLNDDGTVSGFLIRGLEAAEDRVISVDAYVSAMPVDPLKVMLPLPWQQMEYFQKLKGLEG
HCCCCCCCHHHHHHCCHHHCCCEEEEEHHHCCCCCCCHHEEECCCHHHHHHHHHHCCCCC
VPVINLHLWFDRKLTDIDHLLFSRSPLLSVYADMSNTCREYANPNCSMLELVLAPAKDWI
CCEEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHH
SKSEQEIVAATMAELEKLFPAHFTGEDPAKLLKYHVVKTPRSVYKATPGRQDCRPSQVTP
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCH
IANFFLTGDYTMQRYLASMEGAVLSGKLTAQAIAKAKLP
HHHEEECCCHHHHHHHHHHCCCEEECHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1581575; 8905231 [H]