| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477446
Identifier: 113477446
GI number: 113477446
Start: 6208451
End: 6209140
Strand: Reverse
Name: 113477446
Synonym: Tery_4014
Alternate gene names: NA
Gene position: 6209140-6208451 (Counterclockwise)
Preceding gene: 113477447
Following gene: 113477443
Centisome position: 80.12
GC content: 33.77
Gene sequence:
>690_bases GTGTTATCGGCAAGGGATAAAAGCGATGAGCTAGCGGAGGAAAAAGATGCAGTTTCTCTAACTATTGTCTTACGAGAAAT GGCTAATACGATTGTTAACATAAAAGATGTTTTTATGACTACAGAGAAGATTGTGTCTCCTGAAATTTTCAGAAAATACA TCAGACAGTTTCTCAAGGGATGGCACAATAACCTTGAGCTTGTTTATCAAGGTACCGAGATTAATGCTTCAGTTCTCAGA GGAGAAACTGGTTCTAAAAGCATTGCAATGCCTTTATTAGATAGGATTATGGGTTGTATGTCTCTAGATCCTGTACAAAG AAAAATTCTTAACGAAAAACAAGAACTTCCTGTAGAGTTAGTTCTAGAAAATTACTACGGTTTTGTTAACTATATGCCAG CTCCTCATAGAAATTTTTTGGAAGAAACTTATCATAAGAGCCTAGTAAGAAACTTTGTCATGGACAATAATTCTCCAGAT TTAAGAGAAGCTTACAATAACTGTATTGACAAAATTCTTTTGATGCGAACTAATCATTTAAAAATGATTCCTAAATACAT ATCTAATCCAGGTGAAAATAATAATACTGTTTATGGTACAGGTGGCACTTCTTACAGAACTTACCTAGGAACTCTCAGAA ACGTAACAGAATCTGCGGCCATTAATAATAAAAATACAGCTAAAATTTAA
Upstream 100 bases:
>100_bases TTTACCACAAACAATCTTAAAAGTCTGGTTACATTTTCATTTTAGAAGATGAAGACCAATTCATAACTGTTCATGTAGCC TATGAAGCAGCTGCTAGGGA
Downstream 100 bases:
>100_bases AACTAAATACAATATCATATCTGTTCCCCTTAAATAGTTATAATTAAAGTTTGTAGTATTACTAGAGGAATACTACAAAC AAAAACTTTTTTATCACTTA
Product: hypothetical protein
Products: N-formylkynurenine
Alternate protein names: None
Number of amino acids: Translated: 229; Mature: 229
Protein sequence:
>229_residues MLSARDKSDELAEEKDAVSLTIVLREMANTIVNIKDVFMTTEKIVSPEIFRKYIRQFLKGWHNNLELVYQGTEINASVLR GETGSKSIAMPLLDRIMGCMSLDPVQRKILNEKQELPVELVLENYYGFVNYMPAPHRNFLEETYHKSLVRNFVMDNNSPD LREAYNNCIDKILLMRTNHLKMIPKYISNPGENNNTVYGTGGTSYRTYLGTLRNVTESAAINNKNTAKI
Sequences:
>Translated_229_residues MLSARDKSDELAEEKDAVSLTIVLREMANTIVNIKDVFMTTEKIVSPEIFRKYIRQFLKGWHNNLELVYQGTEINASVLR GETGSKSIAMPLLDRIMGCMSLDPVQRKILNEKQELPVELVLENYYGFVNYMPAPHRNFLEETYHKSLVRNFVMDNNSPD LREAYNNCIDKILLMRTNHLKMIPKYISNPGENNNTVYGTGGTSYRTYLGTLRNVTESAAINNKNTAKI >Mature_229_residues MLSARDKSDELAEEKDAVSLTIVLREMANTIVNIKDVFMTTEKIVSPEIFRKYIRQFLKGWHNNLELVYQGTEINASVLR GETGSKSIAMPLLDRIMGCMSLDPVQRKILNEKQELPVELVLENYYGFVNYMPAPHRNFLEETYHKSLVRNFVMDNNSPD LREAYNNCIDKILLMRTNHLKMIPKYISNPGENNNTVYGTGGTSYRTYLGTLRNVTESAAINNKNTAKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI4504577, Length=225, Percent_Identity=27.5555555555556, Blast_Score=87, Evalue=8e-18, Organism=Homo sapiens, GI148539554, Length=214, Percent_Identity=23.3644859813084, Blast_Score=73, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6322538, Length=232, Percent_Identity=25.8620689655172, Blast_Score=63, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.13.11.42
Molecular weight: Translated: 26232; Mature: 26232
Theoretical pI: Translated: 8.18; Mature: 8.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSARDKSDELAEEKDAVSLTIVLREMANTIVNIKDVFMTTEKIVSPEIFRKYIRQFLKG CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH WHNNLELVYQGTEINASVLRGETGSKSIAMPLLDRIMGCMSLDPVQRKILNEKQELPVEL HCCCEEEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCHHHHCCHHH VLENYYGFVNYMPAPHRNFLEETYHKSLVRNFVMDNNSPDLREAYNNCIDKILLMRTNHL HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHH KMIPKYISNPGENNNTVYGTGGTSYRTYLGTLRNVTESAAINNKNTAKI HHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MLSARDKSDELAEEKDAVSLTIVLREMANTIVNIKDVFMTTEKIVSPEIFRKYIRQFLKG CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH WHNNLELVYQGTEINASVLRGETGSKSIAMPLLDRIMGCMSLDPVQRKILNEKQELPVEL HCCCEEEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCHHHHCCHHH VLENYYGFVNYMPAPHRNFLEETYHKSLVRNFVMDNNSPDLREAYNNCIDKILLMRTNHL HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHH KMIPKYISNPGENNNTVYGTGGTSYRTYLGTLRNVTESAAINNKNTAKI HHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: L-tryptophan; O2
Specific reaction: L-tryptophan + O2 = N-formylkynurenine
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA