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The map label for this gene is yhdR [H]

Identifier: 113477026

GI number: 113477026

Start: 5432786

End: 5433997

Strand: Reverse

Name: yhdR [H]

Synonym: Tery_3525

Alternate gene names: 113477026

Gene position: 5433997-5432786 (Counterclockwise)

Preceding gene: 113477027

Following gene: 113477023

Centisome position: 70.12

GC content: 31.85

Gene sequence:

>1212_bases
ATGAACAAACAAAAACAATCAAAATCCCATTTTATTGCACCTAAATTACTCAAAACAATAGAACATGAAACACCAATGAG
CAAATTCTATAGAACAGCAACTTATATGAGTCGAATAAACGAAGCAGGTAATATTAATTTAATTTTGGGAGATTCTCATG
AAATGCCTTTACCTGGATTTGTTGAAGCTTTACAAAAGAATGCAATAGCGAGTAAAATAGGGTATTATGGCTATAAAATG
AATTTACCTGAAACTAGAAAAATTGTCTCTCAGGCACTAAAAAAACATAGAGGAATATCTATTTTACCTGATGATATTTT
TATGACAAATGGTACAGTTATCGGTTTAGCAATATGTTTAAAACTATTAGTTCAAGAAGGGGATGAAGTGATTATTAATC
TTCCTCCCTGGTTAGGCTATCGCGGAATGATTAATGCAGTAGGTGCTAAATCTGTGGGCATTCCAGTCATGGCTAAAACC
TTTGATTTAGACCTAGAAAAAATCGCAAATTCTATTACAGAAAGAACTCGCGCTATTCTAATTAATTCCCCTCATAATCC
AACAGGTAAAATATTATCTGAAAAAACATTAGAGAATTTAGGTAATTTATTAACTGAAGCTTCTAAAAATTATGGCAAAC
CAATTTATTTAATTTCTGATGAAACATTTAGTCGTGTTGTTTTTAATCATCAAAATTGCCCGAGTCCGACACAATTTTAT
CCCCTTTCTTTTTTAGTATATAGTTATAGCAAGACTTGGATAGCTCCTGGTCAAAGAATAGGTTATATTGCTCTTCCTGA
AACTATGCCAGAACGTGAACAGATCAGAAATTTAATTGGTCGATTACAAACCTTATATTTTGGTTGGTGTTTTCCTAGTG
CCCTAATGCAATATGCCTTAGAAGATTTGGAAAATTTAAAACTAAATATTAAACATTTACAAGATAAAAGGGATTGGATA
ATTCAAGAATTACAGAAAATTGGATATGAAGTAAACGTACCACAGGGAACCTTCTTCTTATTAGTAAAATCTCCTTATAA
AGATGACTGTGCTTTTGCCGAATTATTAACTAACTATGGAGTATTTGTTTTGCCAGGAACTCCCCAAGAAATTCCTGGTT
ATTTTCGGATATCTTTGACAGCAAATAAAGATATGCTTACTCAAGCATTGCCAAAATTTAAATTAGCTAGAGAACAAGCA
ATTATGACCTAA

Upstream 100 bases:

>100_bases
TAATATTTAAATCATCAAGATCTAGGAATAAATAGGTATAGTAATCATATCTACTTTCAACCATTTAATTCTATTGTAAT
TAATTTTTATCTACTTCAAA

Downstream 100 bases:

>100_bases
ATTAACAATTAAAATTACATTATTTTAAAGAATCATAGTTCCTAGCTAAAGAAAATGTAAAAAAAAATTGATAAATAATA
TTACTATGTGGTTTATACTT

Product: aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MNKQKQSKSHFIAPKLLKTIEHETPMSKFYRTATYMSRINEAGNINLILGDSHEMPLPGFVEALQKNAIASKIGYYGYKM
NLPETRKIVSQALKKHRGISILPDDIFMTNGTVIGLAICLKLLVQEGDEVIINLPPWLGYRGMINAVGAKSVGIPVMAKT
FDLDLEKIANSITERTRAILINSPHNPTGKILSEKTLENLGNLLTEASKNYGKPIYLISDETFSRVVFNHQNCPSPTQFY
PLSFLVYSYSKTWIAPGQRIGYIALPETMPEREQIRNLIGRLQTLYFGWCFPSALMQYALEDLENLKLNIKHLQDKRDWI
IQELQKIGYEVNVPQGTFFLLVKSPYKDDCAFAELLTNYGVFVLPGTPQEIPGYFRISLTANKDMLTQALPKFKLAREQA
IMT

Sequences:

>Translated_403_residues
MNKQKQSKSHFIAPKLLKTIEHETPMSKFYRTATYMSRINEAGNINLILGDSHEMPLPGFVEALQKNAIASKIGYYGYKM
NLPETRKIVSQALKKHRGISILPDDIFMTNGTVIGLAICLKLLVQEGDEVIINLPPWLGYRGMINAVGAKSVGIPVMAKT
FDLDLEKIANSITERTRAILINSPHNPTGKILSEKTLENLGNLLTEASKNYGKPIYLISDETFSRVVFNHQNCPSPTQFY
PLSFLVYSYSKTWIAPGQRIGYIALPETMPEREQIRNLIGRLQTLYFGWCFPSALMQYALEDLENLKLNIKHLQDKRDWI
IQELQKIGYEVNVPQGTFFLLVKSPYKDDCAFAELLTNYGVFVLPGTPQEIPGYFRISLTANKDMLTQALPKFKLAREQA
IMT
>Mature_403_residues
MNKQKQSKSHFIAPKLLKTIEHETPMSKFYRTATYMSRINEAGNINLILGDSHEMPLPGFVEALQKNAIASKIGYYGYKM
NLPETRKIVSQALKKHRGISILPDDIFMTNGTVIGLAICLKLLVQEGDEVIINLPPWLGYRGMINAVGAKSVGIPVMAKT
FDLDLEKIANSITERTRAILINSPHNPTGKILSEKTLENLGNLLTEASKNYGKPIYLISDETFSRVVFNHQNCPSPTQFY
PLSFLVYSYSKTWIAPGQRIGYIALPETMPEREQIRNLIGRLQTLYFGWCFPSALMQYALEDLENLKLNIKHLQDKRDWI
IQELQKIGYEVNVPQGTFFLLVKSPYKDDCAFAELLTNYGVFVLPGTPQEIPGYFRISLTANKDMLTQALPKFKLAREQA
IMT

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=319, Percent_Identity=25.705329153605, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI169881279, Length=319, Percent_Identity=25.705329153605, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI4507369, Length=327, Percent_Identity=24.1590214067278, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI56713256, Length=315, Percent_Identity=25.0793650793651, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI56713254, Length=315, Percent_Identity=25.0793650793651, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI169881281, Length=200, Percent_Identity=24.5, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI1786816, Length=325, Percent_Identity=27.0769230769231, Blast_Score=98, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17567663, Length=355, Percent_Identity=22.2535211267606, Blast_Score=95, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17567369, Length=315, Percent_Identity=25.3968253968254, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71994472, Length=314, Percent_Identity=23.8853503184713, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71994476, Length=314, Percent_Identity=23.8853503184713, Blast_Score=70, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6322401, Length=282, Percent_Identity=26.241134751773, Blast_Score=91, Evalue=3e-19,
Organism=Drosophila melanogaster, GI28573069, Length=263, Percent_Identity=25.8555133079848, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24646114, Length=263, Percent_Identity=25.8555133079848, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI28573067, Length=263, Percent_Identity=25.8555133079848, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI28573065, Length=263, Percent_Identity=25.8555133079848, Blast_Score=72, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 45631; Mature: 45631

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKQKQSKSHFIAPKLLKTIEHETPMSKFYRTATYMSRINEAGNINLILGDSHEMPLPGF
CCCCHHCHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH
VEALQKNAIASKIGYYGYKMNLPETRKIVSQALKKHRGISILPDDIFMTNGTVIGLAICL
HHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCEECCCCEEECCCHHHHHHHHH
KLLVQEGDEVIINLPPWLGYRGMINAVGAKSVGIPVMAKTFDLDLEKIANSITERTRAIL
HHHHHCCCEEEEECCCCCCCCHHHHHCCCCCCCCCEEEHHHCCCHHHHHHHHHHHHEEEE
INSPHNPTGKILSEKTLENLGNLLTEASKNYGKPIYLISDETFSRVVFNHQNCPSPTQFY
EECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCCCCCC
PLSFLVYSYSKTWIAPGQRIGYIALPETMPEREQIRNLIGRLQTLYFGWCFPSALMQYAL
HHHHHEECCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDLENLKLNIKHLQDKRDWIIQELQKIGYEVNVPQGTFFLLVKSPYKDDCAFAELLTNYG
HHHHHCEEHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCCHHHHHHHHHCCC
VFVLPGTPQEIPGYFRISLTANKDMLTQALPKFKLAREQAIMT
EEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNKQKQSKSHFIAPKLLKTIEHETPMSKFYRTATYMSRINEAGNINLILGDSHEMPLPGF
CCCCHHCHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH
VEALQKNAIASKIGYYGYKMNLPETRKIVSQALKKHRGISILPDDIFMTNGTVIGLAICL
HHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCEECCCCEEECCCHHHHHHHHH
KLLVQEGDEVIINLPPWLGYRGMINAVGAKSVGIPVMAKTFDLDLEKIANSITERTRAIL
HHHHHCCCEEEEECCCCCCCCHHHHHCCCCCCCCCEEEHHHCCCHHHHHHHHHHHHEEEE
INSPHNPTGKILSEKTLENLGNLLTEASKNYGKPIYLISDETFSRVVFNHQNCPSPTQFY
EECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCCCCCC
PLSFLVYSYSKTWIAPGQRIGYIALPETMPEREQIRNLIGRLQTLYFGWCFPSALMQYAL
HHHHHEECCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDLENLKLNIKHLQDKRDWIIQELQKIGYEVNVPQGTFFLLVKSPYKDDCAFAELLTNYG
HHHHHCEEHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCCHHHHHHHHHCCC
VFVLPGTPQEIPGYFRISLTANKDMLTQALPKFKLAREQAIMT
EEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]