Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113476994
Identifier: 113476994
GI number: 113476994
Start: 5383438
End: 5383896
Strand: Reverse
Name: 113476994
Synonym: Tery_3492
Alternate gene names: NA
Gene position: 5383896-5383438 (Counterclockwise)
Preceding gene: 113476995
Following gene: 113476993
Centisome position: 69.47
GC content: 30.07
Gene sequence:
>459_bases ATGAAAAGAAGTATGGAAAATAAATATACTTATACTCATCCTTTAGGTAGATTTGTAACTATAGATGCACTATCATTTCA TTTAGGAATTCAATGGGATAACATTTATAAAATTAGCTGTTGGAAATATGTAATTCATGTTGTAGGAAAAGGAAAAAGTA GGTTTGTCAGTTATGCAGATATGCCACCAGTAATAGGAGTAGAACCACCAAGAAAAGCAGACTTTGCTAAATGGCGAAAG CGAATAAAAACTAGAAAGCAAAAGTATGTACCTAAGTTTTGGGCACAGTTTTATGTCAAAAAAATAGAGAATTCAAACTC AATTAAAACATTATTAAATTGGAATAGTTTAGTTAATCAATGTAAGTCACTAATCTCACTAGAAGGAGTTCAAAAAATTG ACCAGGCTGTGGTTGAAAGAAAACTTAGATTGGAGAAAATTAGTAACCTTAAGTATTAA
Upstream 100 bases:
>100_bases TTGACAAAATACCCAAGTTATATTTAATACATATTAATATATAACTATATAGATAAAAATTTAAGACCACAATCATATAT TAAACCTTCAGGTATATTTT
Downstream 100 bases:
>100_bases AAAAAAACAGAAGTAAAAAAGATTATAGGTTATCTTATTTGGAGAATTGAAAATTTAATAATATAAGTATCTTCAGTTAT CAGTAATAGTATTCAGCATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 152; Mature: 152
Protein sequence:
>152_residues MKRSMENKYTYTHPLGRFVTIDALSFHLGIQWDNIYKISCWKYVIHVVGKGKSRFVSYADMPPVIGVEPPRKADFAKWRK RIKTRKQKYVPKFWAQFYVKKIENSNSIKTLLNWNSLVNQCKSLISLEGVQKIDQAVVERKLRLEKISNLKY
Sequences:
>Translated_152_residues MKRSMENKYTYTHPLGRFVTIDALSFHLGIQWDNIYKISCWKYVIHVVGKGKSRFVSYADMPPVIGVEPPRKADFAKWRK RIKTRKQKYVPKFWAQFYVKKIENSNSIKTLLNWNSLVNQCKSLISLEGVQKIDQAVVERKLRLEKISNLKY >Mature_152_residues MKRSMENKYTYTHPLGRFVTIDALSFHLGIQWDNIYKISCWKYVIHVVGKGKSRFVSYADMPPVIGVEPPRKADFAKWRK RIKTRKQKYVPKFWAQFYVKKIENSNSIKTLLNWNSLVNQCKSLISLEGVQKIDQAVVERKLRLEKISNLKY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17984; Mature: 17984
Theoretical pI: Translated: 10.71; Mature: 10.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRSMENKYTYTHPLGRFVTIDALSFHLGIQWDNIYKISCWKYVIHVVGKGKSRFVSYAD CCCCCCCCCEEECCCCCEEEEEHHEEEEECEECCEEEHHHHHHHHHHHCCCHHHEEECCC MPPVIGVEPPRKADFAKWRKRIKTRKQKYVPKFWAQFYVKKIENSNSIKTLLNWNSLVNQ CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH CKSLISLEGVQKIDQAVVERKLRLEKISNLKY HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKRSMENKYTYTHPLGRFVTIDALSFHLGIQWDNIYKISCWKYVIHVVGKGKSRFVSYAD CCCCCCCCCEEECCCCCEEEEEHHEEEEECEECCEEEHHHHHHHHHHHCCCHHHEEECCC MPPVIGVEPPRKADFAKWRKRIKTRKQKYVPKFWAQFYVKKIENSNSIKTLLNWNSLVNQ CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH CKSLISLEGVQKIDQAVVERKLRLEKISNLKY HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA