Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113476612
Identifier: 113476612
GI number: 113476612
Start: 4711163
End: 4711555
Strand: Reverse
Name: 113476612
Synonym: Tery_3052
Alternate gene names: NA
Gene position: 4711555-4711163 (Counterclockwise)
Preceding gene: 113476613
Following gene: 113476611
Centisome position: 60.79
GC content: 33.08
Gene sequence:
>393_bases ATGACTACTATTTCTACCTCACAAGCAAAACAAGCTATTGAACTTGCCCCTAGTTATAAAATTCCTTTAGTCCTAATAAT TGCTGCATTACCTTTGGCATTTATACAAAAATGGGTGAGTATAGCGATCGCTATATTGGGACTTTTTCTATTAATTCAAA CAATAACTATCCGTCTGAAATTTACTGAGACAGCCTTAGAAGTATACCGTTCAGAGAAACTCTTACGAAACTTTCCTTAT CAAGATTGGCTCAACTGGGAAATATTCTGGTCTCCTATTCCCATTCTATTCTATTTTAGGGAAATTAAAAGTATCCATTT TCTACCAATTATTTTTGATCCTAAAATGTTGCGAACTTGCCTAGAAAATAACTTTCCTTTAAATCAGGATTAA
Upstream 100 bases:
>100_bases ATAACTAATCACTCAAATATTATGTTTGACTGATTTTTGTAGATAACAAGAAACAGAAAATAAAAATAGATAATTATATT GAATTAATTAACATAAAACT
Downstream 100 bases:
>100_bases CTGATGCCGCTACCCAGAAATCAAAATTAAAAAGTATTGTTGATGAGTATTACTTTAATAATTTTGTAATTTATCAGTTA TTTTATTTGTCACAAACTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 130; Mature: 129
Protein sequence:
>130_residues MTTISTSQAKQAIELAPSYKIPLVLIIAALPLAFIQKWVSIAIAILGLFLLIQTITIRLKFTETALEVYRSEKLLRNFPY QDWLNWEIFWSPIPILFYFREIKSIHFLPIIFDPKMLRTCLENNFPLNQD
Sequences:
>Translated_130_residues MTTISTSQAKQAIELAPSYKIPLVLIIAALPLAFIQKWVSIAIAILGLFLLIQTITIRLKFTETALEVYRSEKLLRNFPY QDWLNWEIFWSPIPILFYFREIKSIHFLPIIFDPKMLRTCLENNFPLNQD >Mature_129_residues TTISTSQAKQAIELAPSYKIPLVLIIAALPLAFIQKWVSIAIAILGLFLLIQTITIRLKFTETALEVYRSEKLLRNFPYQ DWLNWEIFWSPIPILFYFREIKSIHFLPIIFDPKMLRTCLENNFPLNQD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15243; Mature: 15112
Theoretical pI: Translated: 9.07; Mature: 9.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTISTSQAKQAIELAPSYKIPLVLIIAALPLAFIQKWVSIAIAILGLFLLIQTITIRLK CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE FTETALEVYRSEKLLRNFPYQDWLNWEIFWSPIPILFYFREIKSIHFLPIIFDPKMLRTC HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHEEEEEEECHHHHHHH LENNFPLNQD HHCCCCCCCC >Mature Secondary Structure TTISTSQAKQAIELAPSYKIPLVLIIAALPLAFIQKWVSIAIAILGLFLLIQTITIRLK CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE FTETALEVYRSEKLLRNFPYQDWLNWEIFWSPIPILFYFREIKSIHFLPIIFDPKMLRTC HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHEEEEEEECHHHHHHH LENNFPLNQD HHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA