Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113476612

Identifier: 113476612

GI number: 113476612

Start: 4711163

End: 4711555

Strand: Reverse

Name: 113476612

Synonym: Tery_3052

Alternate gene names: NA

Gene position: 4711555-4711163 (Counterclockwise)

Preceding gene: 113476613

Following gene: 113476611

Centisome position: 60.79

GC content: 33.08

Gene sequence:

>393_bases
ATGACTACTATTTCTACCTCACAAGCAAAACAAGCTATTGAACTTGCCCCTAGTTATAAAATTCCTTTAGTCCTAATAAT
TGCTGCATTACCTTTGGCATTTATACAAAAATGGGTGAGTATAGCGATCGCTATATTGGGACTTTTTCTATTAATTCAAA
CAATAACTATCCGTCTGAAATTTACTGAGACAGCCTTAGAAGTATACCGTTCAGAGAAACTCTTACGAAACTTTCCTTAT
CAAGATTGGCTCAACTGGGAAATATTCTGGTCTCCTATTCCCATTCTATTCTATTTTAGGGAAATTAAAAGTATCCATTT
TCTACCAATTATTTTTGATCCTAAAATGTTGCGAACTTGCCTAGAAAATAACTTTCCTTTAAATCAGGATTAA

Upstream 100 bases:

>100_bases
ATAACTAATCACTCAAATATTATGTTTGACTGATTTTTGTAGATAACAAGAAACAGAAAATAAAAATAGATAATTATATT
GAATTAATTAACATAAAACT

Downstream 100 bases:

>100_bases
CTGATGCCGCTACCCAGAAATCAAAATTAAAAAGTATTGTTGATGAGTATTACTTTAATAATTTTGTAATTTATCAGTTA
TTTTATTTGTCACAAACTGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MTTISTSQAKQAIELAPSYKIPLVLIIAALPLAFIQKWVSIAIAILGLFLLIQTITIRLKFTETALEVYRSEKLLRNFPY
QDWLNWEIFWSPIPILFYFREIKSIHFLPIIFDPKMLRTCLENNFPLNQD

Sequences:

>Translated_130_residues
MTTISTSQAKQAIELAPSYKIPLVLIIAALPLAFIQKWVSIAIAILGLFLLIQTITIRLKFTETALEVYRSEKLLRNFPY
QDWLNWEIFWSPIPILFYFREIKSIHFLPIIFDPKMLRTCLENNFPLNQD
>Mature_129_residues
TTISTSQAKQAIELAPSYKIPLVLIIAALPLAFIQKWVSIAIAILGLFLLIQTITIRLKFTETALEVYRSEKLLRNFPYQ
DWLNWEIFWSPIPILFYFREIKSIHFLPIIFDPKMLRTCLENNFPLNQD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15243; Mature: 15112

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTISTSQAKQAIELAPSYKIPLVLIIAALPLAFIQKWVSIAIAILGLFLLIQTITIRLK
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
FTETALEVYRSEKLLRNFPYQDWLNWEIFWSPIPILFYFREIKSIHFLPIIFDPKMLRTC
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHEEEEEEECHHHHHHH
LENNFPLNQD
HHCCCCCCCC
>Mature Secondary Structure 
TTISTSQAKQAIELAPSYKIPLVLIIAALPLAFIQKWVSIAIAILGLFLLIQTITIRLK
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
FTETALEVYRSEKLLRNFPYQDWLNWEIFWSPIPILFYFREIKSIHFLPIIFDPKMLRTC
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHEEEEEEECHHHHHHH
LENNFPLNQD
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA