Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113476611
Identifier: 113476611
GI number: 113476611
Start: 4709746
End: 4710918
Strand: Reverse
Name: 113476611
Synonym: Tery_3051
Alternate gene names: NA
Gene position: 4710918-4709746 (Counterclockwise)
Preceding gene: 113476612
Following gene: 113476610
Centisome position: 60.79
GC content: 38.62
Gene sequence:
>1173_bases ATGATGTACCCAGACAAAATACAACCAAAAGAACCAAAAGAACCATTAACAAAAACTTCAGTGAATTCAGATAACTTAAA TCAAATAATTCCTGAAGCTACCGACTTAGATGAAAAAATCAAGATTGAAACTCTTTCTACAGATTCTTCTAGTTTGACTG AGGACTCTACAACCGCGCCAGTTGATAAAAATGAAAAAGAATTAACAACAGTAGTTATTGATCGACTACAGCAACAACAA AACTTGAAAGAAGAAATAGCTACTTTACAAGAAATTAAGGCTAAATTACAACAAGAAGTGATAGCCCAAACTAAGGCTAT AGGGAGTTTAGTCCCAGAAGCTTTAAGTCAGTTGGAGCAACATAAACAAACCTTGCAAATAGAGGTAGAAAAACTAGAGC ATCGCAAAGAACGTATTGAAAAGGAGATGCGGACTACTTTTGCTGGCACTTCTCAGGATTTGGCAATTAGAATTAAGGGT TTTAAAGATTATTTGGTGGGAAGCTTGCAAGATTTGGCTGCTGCTGCCGAACAGTTAGAGTTAACTCCACAAAAAGAGGA GTATCCTACTCCTATAGTGGAAGATGTTCCTATATCTGTCAACAATTATGAAAATCCTAAATTTGCTGAAATGGGTTTTG AGGAACAAACTAGACAGATTCGCCAGATTATGGAGGAATATAGGAAGATGCCTGATTATTATGGTCTCCCTTGGAAATTA CGGCGTACATTTGAGCCTATTCATGCAGAAAGAGTCTCAAATTGGTTTTTCTCTCAAGGTGGTCGTGGTTCCCTCCGAAC TATGGGTAGTCGCTTACAAAATATTTTGGTGGCTTCGGCAATTGTTTCTATACTCAGAGATTTGTATGATACAAGGCTAC GTCCTCTGATACTTGCTAATTCTCCTGAGCGTTTGGGAGAATGGCGTCGTGGTTTACAAGATTGTCTGGGAATTGACCGC CGTGATTTTAGCCCAGAGAGAGGTGTGGCTTTGTTTGAGGAATCGGAAGTATTGGCCCAAAAAGCAGATCGGTTGGTGAG GCAGGGCAAGTTACCAATAATTGTGATTGATGATACGGAAGATAAAATTAGTCTTTCTATGTTACAGTTTCCTCTATGGT TGGCCTTTGCTCCTGAGCTTAATTCTCAAAACTCAACCGATAAATTTTATTGA
Upstream 100 bases:
>100_bases TTTCTGTGTTATTTCCACTTCATAAATTACTACAGCTTTTTTAGTCTAGCTATGGGAATTTTTTCTTTTTCAATAGTATA AATTTTTTATATTTTTTTTC
Downstream 100 bases:
>100_bases AGAAGAAAAAAGGAAAAAGTGGGCAGACATGAAATAAATTATTCTCTTTATTACCAATGCCTGGTTAATTTTTGAAATTA CTAACACCAAAAAGTGTTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 390; Mature: 390
Protein sequence:
>390_residues MMYPDKIQPKEPKEPLTKTSVNSDNLNQIIPEATDLDEKIKIETLSTDSSSLTEDSTTAPVDKNEKELTTVVIDRLQQQQ NLKEEIATLQEIKAKLQQEVIAQTKAIGSLVPEALSQLEQHKQTLQIEVEKLEHRKERIEKEMRTTFAGTSQDLAIRIKG FKDYLVGSLQDLAAAAEQLELTPQKEEYPTPIVEDVPISVNNYENPKFAEMGFEEQTRQIRQIMEEYRKMPDYYGLPWKL RRTFEPIHAERVSNWFFSQGGRGSLRTMGSRLQNILVASAIVSILRDLYDTRLRPLILANSPERLGEWRRGLQDCLGIDR RDFSPERGVALFEESEVLAQKADRLVRQGKLPIIVIDDTEDKISLSMLQFPLWLAFAPELNSQNSTDKFY
Sequences:
>Translated_390_residues MMYPDKIQPKEPKEPLTKTSVNSDNLNQIIPEATDLDEKIKIETLSTDSSSLTEDSTTAPVDKNEKELTTVVIDRLQQQQ NLKEEIATLQEIKAKLQQEVIAQTKAIGSLVPEALSQLEQHKQTLQIEVEKLEHRKERIEKEMRTTFAGTSQDLAIRIKG FKDYLVGSLQDLAAAAEQLELTPQKEEYPTPIVEDVPISVNNYENPKFAEMGFEEQTRQIRQIMEEYRKMPDYYGLPWKL RRTFEPIHAERVSNWFFSQGGRGSLRTMGSRLQNILVASAIVSILRDLYDTRLRPLILANSPERLGEWRRGLQDCLGIDR RDFSPERGVALFEESEVLAQKADRLVRQGKLPIIVIDDTEDKISLSMLQFPLWLAFAPELNSQNSTDKFY >Mature_390_residues MMYPDKIQPKEPKEPLTKTSVNSDNLNQIIPEATDLDEKIKIETLSTDSSSLTEDSTTAPVDKNEKELTTVVIDRLQQQQ NLKEEIATLQEIKAKLQQEVIAQTKAIGSLVPEALSQLEQHKQTLQIEVEKLEHRKERIEKEMRTTFAGTSQDLAIRIKG FKDYLVGSLQDLAAAAEQLELTPQKEEYPTPIVEDVPISVNNYENPKFAEMGFEEQTRQIRQIMEEYRKMPDYYGLPWKL RRTFEPIHAERVSNWFFSQGGRGSLRTMGSRLQNILVASAIVSILRDLYDTRLRPLILANSPERLGEWRRGLQDCLGIDR RDFSPERGVALFEESEVLAQKADRLVRQGKLPIIVIDDTEDKISLSMLQFPLWLAFAPELNSQNSTDKFY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44763; Mature: 44763
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMYPDKIQPKEPKEPLTKTSVNSDNLNQIIPEATDLDEKIKIETLSTDSSSLTEDSTTAP CCCCCCCCCCCCCCCCHHCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC VDKNEKELTTVVIDRLQQQQNLKEEIATLQEIKAKLQQEVIAQTKAIGSLVPEALSQLEQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HKQTLQIEVEKLEHRKERIEKEMRTTFAGTSQDLAIRIKGFKDYLVGSLQDLAAAAEQLE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHC LTPQKEEYPTPIVEDVPISVNNYENPKFAEMGFEEQTRQIRQIMEEYRKMPDYYGLPWKL CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH RRTFEPIHAERVSNWFFSQGGRGSLRTMGSRLQNILVASAIVSILRDLYDTRLRPLILAN HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC SPERLGEWRRGLQDCLGIDRRDFSPERGVALFEESEVLAQKADRLVRQGKLPIIVIDDTE CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCC DKISLSMLQFPLWLAFAPELNSQNSTDKFY CHHHHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MMYPDKIQPKEPKEPLTKTSVNSDNLNQIIPEATDLDEKIKIETLSTDSSSLTEDSTTAP CCCCCCCCCCCCCCCCHHCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC VDKNEKELTTVVIDRLQQQQNLKEEIATLQEIKAKLQQEVIAQTKAIGSLVPEALSQLEQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HKQTLQIEVEKLEHRKERIEKEMRTTFAGTSQDLAIRIKGFKDYLVGSLQDLAAAAEQLE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHC LTPQKEEYPTPIVEDVPISVNNYENPKFAEMGFEEQTRQIRQIMEEYRKMPDYYGLPWKL CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH RRTFEPIHAERVSNWFFSQGGRGSLRTMGSRLQNILVASAIVSILRDLYDTRLRPLILAN HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC SPERLGEWRRGLQDCLGIDRRDFSPERGVALFEESEVLAQKADRLVRQGKLPIIVIDDTE CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCC DKISLSMLQFPLWLAFAPELNSQNSTDKFY CHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA