| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476294
Identifier: 113476294
GI number: 113476294
Start: 4165263
End: 4166156
Strand: Reverse
Name: 113476294
Synonym: Tery_2693
Alternate gene names: NA
Gene position: 4166156-4165263 (Counterclockwise)
Preceding gene: 113476295
Following gene: 113476293
Centisome position: 53.76
GC content: 32.89
Gene sequence:
>894_bases ATGTCAACTCGTCAAAAATTTATTATTGCTCTTGAACAAAACTTACTGACAGTAGCGATCGCTGTCTTAATATTTTTGAT GTATGCTCCTCTGATCATGTATTGGTACGATGGATGGCTAAATAAAAGTATTAGTGTAGAACATGAATATTTTAGTCATG GAATAATAGGCTTACCTTTTGCTGGTTATATTGCTTGGACTAATAGGCAAAAATGGCAAAATTTAGCTAATGTTTTTCAT CCCTTGGGAGCAGTATTATTAGGAATTGCAGGAGTTTGGTATATCAGTGCTATTCCAGACTTGATCAACTTATCTTTGAT CATAATGTTGGTAGGAATTTGCCTTTGGTTTAAAGGAATGCCTGGATTGAAATTAATGGGTATGCCATTACTATTTATTT TGCTTGCTAGTCCTAATAGTATTCCCTATTTAATTGAGCCTTATGCTTTACCTCTACAAAAGTTTATTGCTGGAATTGCT GGGTTTATTTTGATTCAGTTGCAGATGAACGTTACTATTGATCAAATATATTTATATGTCGGTGGTAAAATTGTTGAGGT TGCACCCCATTGTGTAGGTTTAAAAATGTTATTTACTAGTCTCTATTTTTCTTTAATGTTACTTTATTGGAATGGAGCGA TAGGGAGTCGTATTCAGACTACTTTTTTACTGGTTAGTGCAGTATTACTTAGTGTCAGTGCAAATATTTTCAGAAATACT GTACTAACAATTTTTCATGGTACAGGTCAGGATGAAGCTTTTCATTGGTTACATGATGGATGGGGTGGTGATATGTATTC TGCTGGTATTTTGGTTTTATTAATTATAATTATGAAATGGGTAGATAATTATCTCATAAGCTCACTTGATTTTCCCAATA AATCTGATATATAG
Upstream 100 bases:
>100_bases AAGAATAAAGTCCTGATCTATAACTATCAAAATAATTACTAATTAAATCCTAAAGACAGATTTTGAACTTTTGAAATAGT AAACAATAAAACTAAAAAAT
Downstream 100 bases:
>100_bases ATAGGGTTATTTATTAAATTAGAAGTATTTATTTATTTATTTATTTCTTGATGAGATTTAATTTAACTAGATTTAATATC AAAATTATCACCAAATATCA
Product: eight transmembrane protein EpsH
Products: NA
Alternate protein names: RND Family Efflux Transporter Subunit MFP; Eight Transmembrane Protein
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MSTRQKFIIALEQNLLTVAIAVLIFLMYAPLIMYWYDGWLNKSISVEHEYFSHGIIGLPFAGYIAWTNRQKWQNLANVFH PLGAVLLGIAGVWYISAIPDLINLSLIIMLVGICLWFKGMPGLKLMGMPLLFILLASPNSIPYLIEPYALPLQKFIAGIA GFILIQLQMNVTIDQIYLYVGGKIVEVAPHCVGLKMLFTSLYFSLMLLYWNGAIGSRIQTTFLLVSAVLLSVSANIFRNT VLTIFHGTGQDEAFHWLHDGWGGDMYSAGILVLLIIIMKWVDNYLISSLDFPNKSDI
Sequences:
>Translated_297_residues MSTRQKFIIALEQNLLTVAIAVLIFLMYAPLIMYWYDGWLNKSISVEHEYFSHGIIGLPFAGYIAWTNRQKWQNLANVFH PLGAVLLGIAGVWYISAIPDLINLSLIIMLVGICLWFKGMPGLKLMGMPLLFILLASPNSIPYLIEPYALPLQKFIAGIA GFILIQLQMNVTIDQIYLYVGGKIVEVAPHCVGLKMLFTSLYFSLMLLYWNGAIGSRIQTTFLLVSAVLLSVSANIFRNT VLTIFHGTGQDEAFHWLHDGWGGDMYSAGILVLLIIIMKWVDNYLISSLDFPNKSDI >Mature_296_residues STRQKFIIALEQNLLTVAIAVLIFLMYAPLIMYWYDGWLNKSISVEHEYFSHGIIGLPFAGYIAWTNRQKWQNLANVFHP LGAVLLGIAGVWYISAIPDLINLSLIIMLVGICLWFKGMPGLKLMGMPLLFILLASPNSIPYLIEPYALPLQKFIAGIAG FILIQLQMNVTIDQIYLYVGGKIVEVAPHCVGLKMLFTSLYFSLMLLYWNGAIGSRIQTTFLLVSAVLLSVSANIFRNTV LTIFHGTGQDEAFHWLHDGWGGDMYSAGILVLLIIIMKWVDNYLISSLDFPNKSDI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33340; Mature: 33209
Theoretical pI: Translated: 7.21; Mature: 7.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTRQKFIIALEQNLLTVAIAVLIFLMYAPLIMYWYDGWLNKSISVEHEYFSHGIIGLPF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHCCCCCCCC AGYIAWTNRQKWQNLANVFHPLGAVLLGIAGVWYISAIPDLINLSLIIMLVGICLWFKGM HHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PGLKLMGMPLLFILLASPNSIPYLIEPYALPLQKFIAGIAGFILIQLQMNVTIDQIYLYV CCCHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHC GGKIVEVAPHCVGLKMLFTSLYFSLMLLYWNGAIGSRIQTTFLLVSAVLLSVSANIFRNT CCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH VLTIFHGTGQDEAFHWLHDGWGGDMYSAGILVLLIIIMKWVDNYLISSLDFPNKSDI HEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure STRQKFIIALEQNLLTVAIAVLIFLMYAPLIMYWYDGWLNKSISVEHEYFSHGIIGLPF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHCCCCCCCC AGYIAWTNRQKWQNLANVFHPLGAVLLGIAGVWYISAIPDLINLSLIIMLVGICLWFKGM HHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PGLKLMGMPLLFILLASPNSIPYLIEPYALPLQKFIAGIAGFILIQLQMNVTIDQIYLYV CCCHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHC GGKIVEVAPHCVGLKMLFTSLYFSLMLLYWNGAIGSRIQTTFLLVSAVLLSVSANIFRNT CCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH VLTIFHGTGQDEAFHWLHDGWGGDMYSAGILVLLIIIMKWVDNYLISSLDFPNKSDI HEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA