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The map label for this gene is degT [H]

Identifier: 113476295

GI number: 113476295

Start: 4166810

End: 4167943

Strand: Reverse

Name: degT [H]

Synonym: Tery_2694

Alternate gene names: 113476295

Gene position: 4167943-4166810 (Counterclockwise)

Preceding gene: 113476297

Following gene: 113476294

Centisome position: 53.78

GC content: 36.95

Gene sequence:

>1134_bases
ATGCTAAAAAATATTCCTTTCATTGACCTAAAATTACAACATCAACCACTAGAAAGTGAGTTCAAAAAATCAATTCAGGA
AGTATTAGAAAGAGGAGACTTTATACTTGGTCAAGCAGTGGCAAAGTTTGAATCCTCATTTGCTACAACTTGTGGAGTTG
AAAATGCTATTGGAGTTGCTTGTGGCACAGATGCTATAGCACTTGGACTTCAAGCTTGTGGTGTTAGTGCAGGAGATGAG
GTAATTTTACCAGCTAATACATTTATTGCTACTTTAATAGGTGTACTTCATACTGGTGCGACCCCAGTGCTAGTAGACTG
CGATGAGGAAACAGCATTAATTGATTTAGAAATTGCTCAAAAAGCTGTCACAAACAAAACTAAGGTAATATTGCCAGTAC
ATCTTTATGGTCAAATGGTAGCTCCCAGTAAATTACTAGACTTTGCTCAAGCTAATAAGCTCATTATATTTGAGGATGCA
GCTCAGGCTCATTTGGCTCAAAGAGAAGGATATCGTGCTGGAAGTATTGGAACTGCTGCTGCATTTAGCTTTTATCCTAG
TAAAAATTTAGGTTGTTTTGGGGATGGAGGTATGGTCGTTACTAGTGACCAAAAGGTAGCAAGTAAAATGCGAATGCTTC
GTAATTATGGTGCTCCTCGTAAATATGTCTATGAGGAATTAGGTACTAATAGTAGATTAGATACTTTACAAGCAGCAGTA
CTAAATGTTAAGCTTCCTTACTTGAAAGGTTGGAATAGCGATCGCAACCAAGCAGCTCAAAAATACGATACCCTCCTCAG
TCCGATGAAAGAGAAAGGTATTATTCCGATACAGAATTTGAGTGGTACTGGGCATATTTATCATTTATATGTGATTCGAA
TTACTGACAAGTCTCCAATAGACCGCGATACTCTGAAAGATAAATTAGGAGTAGCAGGAATTTCTGTTGGTATCCATTAC
CCTATACCCTGTCATCTCCAACCAGCTTATCAACACTTAGGCTATAAAAAAGGAGATTTTCCTAACAGTGAAACTCTGAG
TCAACAGATTTTATCTTTACCTATGTATCCTGTAATTAGTGAAGAACAAATTAATCTTGTTGTTGAGACAATTATTCAAA
TTATCAGTCAGTAA

Upstream 100 bases:

>100_bases
TCCTTTGATGACGAGGCTTATGAACTTTGGTTTTCAGTGAAAATACTTAGTTGACTCGTCTAATATAGTTGATTTGAACT
ATTAATATTATTTGAACATA

Downstream 100 bases:

>100_bases
GTGTTAAGTAAAAAGCTATCAGCTTTGTATGAAATACATAATAAAAATTCTTTTTCCCTAATTAATTATTTAATTGATTT
TAAATTTATGATACTATTAT

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MLKNIPFIDLKLQHQPLESEFKKSIQEVLERGDFILGQAVAKFESSFATTCGVENAIGVACGTDAIALGLQACGVSAGDE
VILPANTFIATLIGVLHTGATPVLVDCDEETALIDLEIAQKAVTNKTKVILPVHLYGQMVAPSKLLDFAQANKLIIFEDA
AQAHLAQREGYRAGSIGTAAAFSFYPSKNLGCFGDGGMVVTSDQKVASKMRMLRNYGAPRKYVYEELGTNSRLDTLQAAV
LNVKLPYLKGWNSDRNQAAQKYDTLLSPMKEKGIIPIQNLSGTGHIYHLYVIRITDKSPIDRDTLKDKLGVAGISVGIHY
PIPCHLQPAYQHLGYKKGDFPNSETLSQQILSLPMYPVISEEQINLVVETIIQIISQ

Sequences:

>Translated_377_residues
MLKNIPFIDLKLQHQPLESEFKKSIQEVLERGDFILGQAVAKFESSFATTCGVENAIGVACGTDAIALGLQACGVSAGDE
VILPANTFIATLIGVLHTGATPVLVDCDEETALIDLEIAQKAVTNKTKVILPVHLYGQMVAPSKLLDFAQANKLIIFEDA
AQAHLAQREGYRAGSIGTAAAFSFYPSKNLGCFGDGGMVVTSDQKVASKMRMLRNYGAPRKYVYEELGTNSRLDTLQAAV
LNVKLPYLKGWNSDRNQAAQKYDTLLSPMKEKGIIPIQNLSGTGHIYHLYVIRITDKSPIDRDTLKDKLGVAGISVGIHY
PIPCHLQPAYQHLGYKKGDFPNSETLSQQILSLPMYPVISEEQINLVVETIIQIISQ
>Mature_377_residues
MLKNIPFIDLKLQHQPLESEFKKSIQEVLERGDFILGQAVAKFESSFATTCGVENAIGVACGTDAIALGLQACGVSAGDE
VILPANTFIATLIGVLHTGATPVLVDCDEETALIDLEIAQKAVTNKTKVILPVHLYGQMVAPSKLLDFAQANKLIIFEDA
AQAHLAQREGYRAGSIGTAAAFSFYPSKNLGCFGDGGMVVTSDQKVASKMRMLRNYGAPRKYVYEELGTNSRLDTLQAAV
LNVKLPYLKGWNSDRNQAAQKYDTLLSPMKEKGIIPIQNLSGTGHIYHLYVIRITDKSPIDRDTLKDKLGVAGISVGIHY
PIPCHLQPAYQHLGYKKGDFPNSETLSQQILSLPMYPVISEEQINLVVETIIQIISQ

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=372, Percent_Identity=31.1827956989247, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI2367285, Length=312, Percent_Identity=30.4487179487179, Blast_Score=146, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41104; Mature: 41104

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKNIPFIDLKLQHQPLESEFKKSIQEVLERGDFILGQAVAKFESSFATTCGVENAIGVA
CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEE
CGTDAIALGLQACGVSAGDEVILPANTFIATLIGVLHTGATPVLVDCDEETALIDLEIAQ
ECCHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHCCCCCEEEECCCCCEEEEHHHHH
KAVTNKTKVILPVHLYGQMVAPSKLLDFAQANKLIIFEDAAQAHLAQREGYRAGSIGTAA
HHHCCCCEEEEEEEHHCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCHHH
AFSFYPSKNLGCFGDGGMVVTSDQKVASKMRMLRNYGAPRKYVYEELGTNSRLDTLQAAV
EEEECCCCCCCEECCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
LNVKLPYLKGWNSDRNQAAQKYDTLLSPMKEKGIIPIQNLSGTGHIYHLYVIRITDKSPI
HEEECCHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEECCCCCC
DRDTLKDKLGVAGISVGIHYPIPCHLQPAYQHLGYKKGDFPNSETLSQQILSLPMYPVIS
CHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCC
EEQINLVVETIIQIISQ
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLKNIPFIDLKLQHQPLESEFKKSIQEVLERGDFILGQAVAKFESSFATTCGVENAIGVA
CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEE
CGTDAIALGLQACGVSAGDEVILPANTFIATLIGVLHTGATPVLVDCDEETALIDLEIAQ
ECCHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHCCCCCEEEECCCCCEEEEHHHHH
KAVTNKTKVILPVHLYGQMVAPSKLLDFAQANKLIIFEDAAQAHLAQREGYRAGSIGTAA
HHHCCCCEEEEEEEHHCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCHHH
AFSFYPSKNLGCFGDGGMVVTSDQKVASKMRMLRNYGAPRKYVYEELGTNSRLDTLQAAV
EEEECCCCCCCEECCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
LNVKLPYLKGWNSDRNQAAQKYDTLLSPMKEKGIIPIQNLSGTGHIYHLYVIRITDKSPI
HEEECCHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEECCCCCC
DRDTLKDKLGVAGISVGIHYPIPCHLQPAYQHLGYKKGDFPNSETLSQQILSLPMYPVIS
CHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCC
EEQINLVVETIIQIISQ
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]