| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113476293
Identifier: 113476293
GI number: 113476293
Start: 4164431
End: 4165150
Strand: Reverse
Name: 113476293
Synonym: Tery_2692
Alternate gene names: NA
Gene position: 4165150-4164431 (Counterclockwise)
Preceding gene: 113476294
Following gene: 113476292
Centisome position: 53.74
GC content: 33.89
Gene sequence:
>720_bases ATGCTTTATCCTTTCAATAAATTACAAAAACATCAATTTCCACAAGTGATCTTAGTACTATTTCTGCTAATTATTTTAGT AGTAGGAACTTTGCCTGGTTATATAGCAGGAAAATGGTCATGGGAAAATACAGCCTCTATACCTTATTTAAAAAGTTTAA GACAAATAAGAAAAGACGGATTAACTATTTCTGGTTTGCCAATAATATATCGTCAACAATTGATAATTTCTAATCATAAA TGGTTACTGCAAAAAGTTAAAAATGATACTAGAGAAATAGTTTTTTTACTGTTAACTCCTAATGGACCAGAAGACAAGCC TCAAGTAGAATGGATGGATATAAGTGGGCTTAATCGTTGGAAAATAGATTCCCAAAAGACTGTTAAATTTACTTTGAAAA CAGTAGAAGATGATAATGGAACTACAGAGATAAAAAAACAATATCCTAATATAAAGGCTAGATTCTTTCGAGGTTGGACA AGTGAACAAACTTATGCAATTATGCAGTGGTATGCTTGGCCTGGAGGAGGAAGTCCAGAACCTAGGGATTGGTTTTGGGC TGATAGATTCGCTATGGCTTCTAAAAAGCGCATGCCTTGGGTAGCAGTAAGTATTATATTTCCTATCGAACCTCTAACAG ATATAGATCCCTATCTCCCAGAGCTCATTTCTATTGGGCAAAAAACTCAAGCGTCACTGATAAAAAACGCATTCAAATAA
Upstream 100 bases:
>100_bases ATTAAATTAGAAGTATTTATTTATTTATTTATTTCTTGATGAGATTTAATTTAACTAGATTTAATATCAAAATTATCACC AAATATCAGAGGTTTTTATT
Downstream 100 bases:
>100_bases TCCTTAAATATCAAAATTACAATTAGATTAAGTTACTCTAACTTTTCACATATCACATAGTTAAAATCAATGAATAGTTA CTTATTGTAATAAGAAAATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 239; Mature: 239
Protein sequence:
>239_residues MLYPFNKLQKHQFPQVILVLFLLIILVVGTLPGYIAGKWSWENTASIPYLKSLRQIRKDGLTISGLPIIYRQQLIISNHK WLLQKVKNDTREIVFLLLTPNGPEDKPQVEWMDISGLNRWKIDSQKTVKFTLKTVEDDNGTTEIKKQYPNIKARFFRGWT SEQTYAIMQWYAWPGGGSPEPRDWFWADRFAMASKKRMPWVAVSIIFPIEPLTDIDPYLPELISIGQKTQASLIKNAFK
Sequences:
>Translated_239_residues MLYPFNKLQKHQFPQVILVLFLLIILVVGTLPGYIAGKWSWENTASIPYLKSLRQIRKDGLTISGLPIIYRQQLIISNHK WLLQKVKNDTREIVFLLLTPNGPEDKPQVEWMDISGLNRWKIDSQKTVKFTLKTVEDDNGTTEIKKQYPNIKARFFRGWT SEQTYAIMQWYAWPGGGSPEPRDWFWADRFAMASKKRMPWVAVSIIFPIEPLTDIDPYLPELISIGQKTQASLIKNAFK >Mature_239_residues MLYPFNKLQKHQFPQVILVLFLLIILVVGTLPGYIAGKWSWENTASIPYLKSLRQIRKDGLTISGLPIIYRQQLIISNHK WLLQKVKNDTREIVFLLLTPNGPEDKPQVEWMDISGLNRWKIDSQKTVKFTLKTVEDDNGTTEIKKQYPNIKARFFRGWT SEQTYAIMQWYAWPGGGSPEPRDWFWADRFAMASKKRMPWVAVSIIFPIEPLTDIDPYLPELISIGQKTQASLIKNAFK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27797; Mature: 27797
Theoretical pI: Translated: 10.22; Mature: 10.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLYPFNKLQKHQFPQVILVLFLLIILVVGTLPGYIAGKWSWENTASIPYLKSLRQIRKDG CCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHCC LTISGLPIIYRQQLIISNHKWLLQKVKNDTREIVFLLLTPNGPEDKPQVEWMDISGLNRW CEECCCHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEEEEECCCCCEE KIDSQKTVKFTLKTVEDDNGTTEIKKQYPNIKARFFRGWTSEQTYAIMQWYAWPGGGSPE ECCCCCEEEEEEEEEECCCCCHHHHHHCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCC PRDWFWADRFAMASKKRMPWVAVSIIFPIEPLTDIDPYLPELISIGQKTQASLIKNAFK CCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCC >Mature Secondary Structure MLYPFNKLQKHQFPQVILVLFLLIILVVGTLPGYIAGKWSWENTASIPYLKSLRQIRKDG CCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHCC LTISGLPIIYRQQLIISNHKWLLQKVKNDTREIVFLLLTPNGPEDKPQVEWMDISGLNRW CEECCCHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEEEEECCCCCEE KIDSQKTVKFTLKTVEDDNGTTEIKKQYPNIKARFFRGWTSEQTYAIMQWYAWPGGGSPE ECCCCCEEEEEEEEEECCCCCHHHHHHCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCC PRDWFWADRFAMASKKRMPWVAVSIIFPIEPLTDIDPYLPELISIGQKTQASLIKNAFK CCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA