| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476244
Identifier: 113476244
GI number: 113476244
Start: 4087746
End: 4089296
Strand: Reverse
Name: 113476244
Synonym: Tery_2637
Alternate gene names: NA
Gene position: 4089296-4087746 (Counterclockwise)
Preceding gene: 113476245
Following gene: 113476243
Centisome position: 52.76
GC content: 31.14
Gene sequence:
>1551_bases ATGAAAATTCTTAGATATAAAAAGTTTCAAAATTTAGGTTTAGCAGATTTCAAATTTTTATTTAACAGGCCAACACTACC TTATTTAATTATTGCTTTTGGGGTAGCTATGAGGTTTATTCAATATTTATCTAATCGTTCTCTCTGGGCAGATGAAGCAG TTTTAGCCTTAAATATTGTCAATCGTTCTTATTTAGAATTAATGCAACCTTTGGATTATGATCAAGGTGCGCCCATAGGT TTTTTAATAGTAGAAAAATTAGCAGTTCAGATATTAGGTAATAATGAGTATTCCCTACGTTTTTTTCCTTTTATCTGTGG TGTTTGCTCGTTGTTTTTATTCTATGAATTAGGCAAAAAATGGAGTTCTAAATCTGCTATTATTATTAGTTTGGCTTTAT TTGCTAGCCTACAATATTTAGTGTATTACTCAGCAGAAGTCAAACAATATTCCAGTGATGTAGCGATCGCTCTGCTTTTA TATGTACTATTAATACCTTTGCTACAACAAAAATTGCACCGGGTTCAGATAGTTAAATATTCTCTAGTGGGAGTAACTGC TATTTGGTTTTCTCATCCTTCTATCTTTATTTTGGCAAGTTTTGGTAGTAGTGCTTTACTAATTAATTTTTGGCAGAAAG AACTCAGTAAAATCAAACAGTTATTACTCATTTATTCAGCTTGGGTTTTAAGTTTTGCCATCTTTTATTTCCTATCTTTG ATAAATTTAACGAGCAATGAAACTTTAACGACTTCTTGGGAGGATGGTTTCCCTACTTCCCCATTGGATATTATTTGGAT GCTAGACGCTTTCGGTAAATTTTTCTATAAACCCTTAGGCTTTAGCAAATGGGTTGATGGATTAGCCATTGTCGCTTTTT TAGTAGGTTGTATTTCCTGTTGGTTGAGCAGAAAAAAAATTTTGCTGCTCCTACTTTCTCCATTGTTGATGACTTTTTTA GCATCCTTTTTACATCAATACCCATTTCGGAGTCGTTTGGTTCTATTTCTCACACCATTTGTAATTTTTCTCATAGCAGA AGGCGGAAGTTATATTTTGACAAAATCTAAATTTAGACCAATTAAAATTATAACTATTTTCTTGATTATTTTATTACTCA GACAACCTTTAGTAAAAGCCATTAAATTAATAGAAAAACCTCTCAATTTATCAGAAATAAAACCTGTGTTGAGCTATATC AAAAAAAATCAACAACCAGGAGATATTTTGTATGTCTATCAACGAGGAATATATCAGTTTCAGTATTATGCAGAAAAATA TGGTTATCAAGAAGGTGACTATATTATTGGTGTGGATGATTTAGATAAGTTTGATGGTCAAGAATTATCAATTACTGAGA TGACAAGATATGAAAAAGACTTAGACAAACTGCGGGGGAATGAAAGAGTATGGTTATTATTTTCTCATACTCATATTCCA GCAGAAAGAAGATTTTTAAACTATTATTTAAATGAAATTGGTCTCAGAATAGATACTTTTGAAAAACCTGGATCTTATGT ATATTTATACGACATGAGTTACCGAAATTAG
Upstream 100 bases:
>100_bases TTCAAAATTTAGGTTTAGCAGATTTCAAATTTTTATTTAACAGGCCAATACTACCTTATTTGATTAGGGTAATTTTTCTT ATTTTTTGCTGGAGTTGAGG
Downstream 100 bases:
>100_bases AATCAAGTCTTTCCTTATCTCTATGCATCAAAAATTTTTATCCTGCTGAGATAATTGAATAATTAATCTGTACATGTATG AACAAATACATGTGGTAATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 516; Mature: 516
Protein sequence:
>516_residues MKILRYKKFQNLGLADFKFLFNRPTLPYLIIAFGVAMRFIQYLSNRSLWADEAVLALNIVNRSYLELMQPLDYDQGAPIG FLIVEKLAVQILGNNEYSLRFFPFICGVCSLFLFYELGKKWSSKSAIIISLALFASLQYLVYYSAEVKQYSSDVAIALLL YVLLIPLLQQKLHRVQIVKYSLVGVTAIWFSHPSIFILASFGSSALLINFWQKELSKIKQLLLIYSAWVLSFAIFYFLSL INLTSNETLTTSWEDGFPTSPLDIIWMLDAFGKFFYKPLGFSKWVDGLAIVAFLVGCISCWLSRKKILLLLLSPLLMTFL ASFLHQYPFRSRLVLFLTPFVIFLIAEGGSYILTKSKFRPIKIITIFLIILLLRQPLVKAIKLIEKPLNLSEIKPVLSYI KKNQQPGDILYVYQRGIYQFQYYAEKYGYQEGDYIIGVDDLDKFDGQELSITEMTRYEKDLDKLRGNERVWLLFSHTHIP AERRFLNYYLNEIGLRIDTFEKPGSYVYLYDMSYRN
Sequences:
>Translated_516_residues MKILRYKKFQNLGLADFKFLFNRPTLPYLIIAFGVAMRFIQYLSNRSLWADEAVLALNIVNRSYLELMQPLDYDQGAPIG FLIVEKLAVQILGNNEYSLRFFPFICGVCSLFLFYELGKKWSSKSAIIISLALFASLQYLVYYSAEVKQYSSDVAIALLL YVLLIPLLQQKLHRVQIVKYSLVGVTAIWFSHPSIFILASFGSSALLINFWQKELSKIKQLLLIYSAWVLSFAIFYFLSL INLTSNETLTTSWEDGFPTSPLDIIWMLDAFGKFFYKPLGFSKWVDGLAIVAFLVGCISCWLSRKKILLLLLSPLLMTFL ASFLHQYPFRSRLVLFLTPFVIFLIAEGGSYILTKSKFRPIKIITIFLIILLLRQPLVKAIKLIEKPLNLSEIKPVLSYI KKNQQPGDILYVYQRGIYQFQYYAEKYGYQEGDYIIGVDDLDKFDGQELSITEMTRYEKDLDKLRGNERVWLLFSHTHIP AERRFLNYYLNEIGLRIDTFEKPGSYVYLYDMSYRN >Mature_516_residues MKILRYKKFQNLGLADFKFLFNRPTLPYLIIAFGVAMRFIQYLSNRSLWADEAVLALNIVNRSYLELMQPLDYDQGAPIG FLIVEKLAVQILGNNEYSLRFFPFICGVCSLFLFYELGKKWSSKSAIIISLALFASLQYLVYYSAEVKQYSSDVAIALLL YVLLIPLLQQKLHRVQIVKYSLVGVTAIWFSHPSIFILASFGSSALLINFWQKELSKIKQLLLIYSAWVLSFAIFYFLSL INLTSNETLTTSWEDGFPTSPLDIIWMLDAFGKFFYKPLGFSKWVDGLAIVAFLVGCISCWLSRKKILLLLLSPLLMTFL ASFLHQYPFRSRLVLFLTPFVIFLIAEGGSYILTKSKFRPIKIITIFLIILLLRQPLVKAIKLIEKPLNLSEIKPVLSYI KKNQQPGDILYVYQRGIYQFQYYAEKYGYQEGDYIIGVDDLDKFDGQELSITEMTRYEKDLDKLRGNERVWLLFSHTHIP AERRFLNYYLNEIGLRIDTFEKPGSYVYLYDMSYRN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59982; Mature: 59982
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKILRYKKFQNLGLADFKFLFNRPTLPYLIIAFGVAMRFIQYLSNRSLWADEAVLALNIV CCCCHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH NRSYLELMQPLDYDQGAPIGFLIVEKLAVQILGNNEYSLRFFPFICGVCSLFLFYELGKK HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHC WSSKSAIIISLALFASLQYLVYYSAEVKQYSSDVAIALLLYVLLIPLLQQKLHRVQIVKY CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLVGVTAIWFSHPSIFILASFGSSALLINFWQKELSKIKQLLLIYSAWVLSFAIFYFLSL HHHHHHHHEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH INLTSNETLTTSWEDGFPTSPLDIIWMLDAFGKFFYKPLGFSKWVDGLAIVAFLVGCISC HHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH WLSRKKILLLLLSPLLMTFLASFLHQYPFRSRLVLFLTPFVIFLIAEGGSYILTKSKFRP HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC IKIITIFLIILLLRQPLVKAIKLIEKPLNLSEIKPVLSYIKKNQQPGDILYVYQRGIYQF HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHCHHHH QYYAEKYGYQEGDYIIGVDDLDKFDGQELSITEMTRYEKDLDKLRGNERVWLLFSHTHIP HHHHHHCCCCCCCEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCC AERRFLNYYLNEIGLRIDTFEKPGSYVYLYDMSYRN HHHHHHHHHHHHHCCEEECCCCCCCEEEEEECCCCC >Mature Secondary Structure MKILRYKKFQNLGLADFKFLFNRPTLPYLIIAFGVAMRFIQYLSNRSLWADEAVLALNIV CCCCHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH NRSYLELMQPLDYDQGAPIGFLIVEKLAVQILGNNEYSLRFFPFICGVCSLFLFYELGKK HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHC WSSKSAIIISLALFASLQYLVYYSAEVKQYSSDVAIALLLYVLLIPLLQQKLHRVQIVKY CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLVGVTAIWFSHPSIFILASFGSSALLINFWQKELSKIKQLLLIYSAWVLSFAIFYFLSL HHHHHHHHEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH INLTSNETLTTSWEDGFPTSPLDIIWMLDAFGKFFYKPLGFSKWVDGLAIVAFLVGCISC HHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH WLSRKKILLLLLSPLLMTFLASFLHQYPFRSRLVLFLTPFVIFLIAEGGSYILTKSKFRP HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC IKIITIFLIILLLRQPLVKAIKLIEKPLNLSEIKPVLSYIKKNQQPGDILYVYQRGIYQF HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHCHHHH QYYAEKYGYQEGDYIIGVDDLDKFDGQELSITEMTRYEKDLDKLRGNERVWLLFSHTHIP HHHHHHCCCCCCCEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEEEECCCCC AERRFLNYYLNEIGLRIDTFEKPGSYVYLYDMSYRN HHHHHHHHHHHHHCCEEECCCCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA