| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476243
Identifier: 113476243
GI number: 113476243
Start: 4085844
End: 4087607
Strand: Reverse
Name: 113476243
Synonym: Tery_2636
Alternate gene names: NA
Gene position: 4087607-4085844 (Counterclockwise)
Preceding gene: 113476244
Following gene: 113476242
Centisome position: 52.74
GC content: 30.67
Gene sequence:
>1764_bases ATGTATATTCAAAAGATTAAACAAATTTTAATCCCATCAAATTATCCAAAAAAATCGTCAACAATATTCTGGCTAATTCT TAGTTTAACCTTCACAACAATCTATAGTTTACTAGTAATTAAAGAAGCTTTTAGAGGAGAATATATAGTACAAGATGATG CCAGACAGCACGTTTTTTGGATGCGCCGTTTTTTAGATCCAGAATTATTTCCCAACGACTTAATTGCCGACTATTTTCAA TCTGTTGCACCTTGGGGATATAAAACTTTTTATTGGCTATTTTCTCAAGTAGGAATAGATCCAATATTCCTAAATAAACT CTTACCTTTAGGATTAAGTTTGGTAACTACTTTCTATTGTTTTGGTCTGTGTTTTCAGATATTGCCAATACCTTTTGCAG GTTTTCTTGCCTCAGTATTATTAAGTCAAAATCTTTGGTTTCAAGATGACATCGCTTCCGGCACACCAAGAGCTTTTTTG TATCCTTTATTTTTAGCAGTTTTATACTATTTATTGCGAAAATTATTACTTCCTTTTTTAGTAGCGATCGCTCTCCTCGG ATTATTCTATCCACAATATGTTATCGTCACTGGATTAATTTTAATTATCAGAATTTTTAACTGGGAAAAGAGTCAGTTTT ATCTGAGCAAAAATCCACAGCATTATCTATTTAGTGGAGTAGGTTTAGGAGTAAGCTTACTAGTAATTTTATTTTATGTT TTAAATTCTAGTAATTATGCACCTATAATTACAGCATCCCAAGCCAAAATTTTGCCAGAATTTGGCGAAGCTGGTAGAAG TGTTTTTTTCTCACAAAATTACTGGGATTTTTTCATCCTTGGCGGTCGTAGTGGTATTCTACCTAAACAATTATTTCTGC CTCATATATTAATAGTTGGATTATTATTACCAATACTTTTGAAAAGCAAAGAAGGGAAAAATAATAATCTTGATCATGGA ATAAATTTCCCCAGACAACTTCCCTTGCTAAAACAAATAAGTCCTAATATTAATTTATTATTTCAAATATTGTTAGCTGG CGTCGCTTTATTTGTAATAGCTCATCTTTTATTATTCAAATTACATTTACCAAGTCGTTACACAAATCATAGTTTTCGGA TAGTATTAGCCATAGGCACTGCCATTGTTTTATGTATAATTTTAGATAGATTTTTTTACTGGATAAATCAACAGTTATCC TGCCCAAAAAGAAAAATTTTAGGATTAATAATAATTGGGATTTTGGGGATTTTATTAATAAGTAATATGAGCTTATGGAA AAAAATTTCTTACCCTGATTATCAAAAAGGTAAATCCCCAGAAATTTATCAGTTTTTTGCTCAAAAACCAAAAGATATTT TGATTGCTTCTCTGTCAGAAGAGGCAAATTATATTCCTACATTTTCTCAACGTTCCGTATTATTTGCCTGGGAATATGCT ATTCCCTATCATCTTAGTTATTACAGTCAAATAAAACAACGAGCTACAGAATTTGTTTGGGCTCAGTATCATTCAGATAT TCAGTGGATGAAGAATTTTATTAATACTTATAGAATTGATTTCTTAATCTTAGACCGAGAAGCATTTATGCCAGAATATG TAATAAAAAATCGTTGGTTGAGGCAGTGGTATTATCAAATGGGAAATCAAATTGAAATTAATCTCCAAAATGGAAAGACT CCTGCCATAGTTGACACTATAGATAAATGTTCAGTTTTAGAAACAGAAAAATTATGGGTTTTGGAAGCTAAATGTATTGA ATAA
Upstream 100 bases:
>100_bases TATCCTGCTGAGATAATTGAATAATTAATCTGTACATGTATGAACAAATACATGTGGTAATTTTAGTCTTTATCAAGAGC AGGAATGAGTAATAAAAATT
Downstream 100 bases:
>100_bases GGAAAAAGGAAAAAGGAAGAAGGAAAAGTATAGTAAATAAAGTCTGATGTATGTCAAGCTTTTAACTTTGAGACAATAGA ATACTTCAACTGATAATCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 587; Mature: 587
Protein sequence:
>587_residues MYIQKIKQILIPSNYPKKSSTIFWLILSLTFTTIYSLLVIKEAFRGEYIVQDDARQHVFWMRRFLDPELFPNDLIADYFQ SVAPWGYKTFYWLFSQVGIDPIFLNKLLPLGLSLVTTFYCFGLCFQILPIPFAGFLASVLLSQNLWFQDDIASGTPRAFL YPLFLAVLYYLLRKLLLPFLVAIALLGLFYPQYVIVTGLILIIRIFNWEKSQFYLSKNPQHYLFSGVGLGVSLLVILFYV LNSSNYAPIITASQAKILPEFGEAGRSVFFSQNYWDFFILGGRSGILPKQLFLPHILIVGLLLPILLKSKEGKNNNLDHG INFPRQLPLLKQISPNINLLFQILLAGVALFVIAHLLLFKLHLPSRYTNHSFRIVLAIGTAIVLCIILDRFFYWINQQLS CPKRKILGLIIIGILGILLISNMSLWKKISYPDYQKGKSPEIYQFFAQKPKDILIASLSEEANYIPTFSQRSVLFAWEYA IPYHLSYYSQIKQRATEFVWAQYHSDIQWMKNFINTYRIDFLILDREAFMPEYVIKNRWLRQWYYQMGNQIEINLQNGKT PAIVDTIDKCSVLETEKLWVLEAKCIE
Sequences:
>Translated_587_residues MYIQKIKQILIPSNYPKKSSTIFWLILSLTFTTIYSLLVIKEAFRGEYIVQDDARQHVFWMRRFLDPELFPNDLIADYFQ SVAPWGYKTFYWLFSQVGIDPIFLNKLLPLGLSLVTTFYCFGLCFQILPIPFAGFLASVLLSQNLWFQDDIASGTPRAFL YPLFLAVLYYLLRKLLLPFLVAIALLGLFYPQYVIVTGLILIIRIFNWEKSQFYLSKNPQHYLFSGVGLGVSLLVILFYV LNSSNYAPIITASQAKILPEFGEAGRSVFFSQNYWDFFILGGRSGILPKQLFLPHILIVGLLLPILLKSKEGKNNNLDHG INFPRQLPLLKQISPNINLLFQILLAGVALFVIAHLLLFKLHLPSRYTNHSFRIVLAIGTAIVLCIILDRFFYWINQQLS CPKRKILGLIIIGILGILLISNMSLWKKISYPDYQKGKSPEIYQFFAQKPKDILIASLSEEANYIPTFSQRSVLFAWEYA IPYHLSYYSQIKQRATEFVWAQYHSDIQWMKNFINTYRIDFLILDREAFMPEYVIKNRWLRQWYYQMGNQIEINLQNGKT PAIVDTIDKCSVLETEKLWVLEAKCIE >Mature_587_residues MYIQKIKQILIPSNYPKKSSTIFWLILSLTFTTIYSLLVIKEAFRGEYIVQDDARQHVFWMRRFLDPELFPNDLIADYFQ SVAPWGYKTFYWLFSQVGIDPIFLNKLLPLGLSLVTTFYCFGLCFQILPIPFAGFLASVLLSQNLWFQDDIASGTPRAFL YPLFLAVLYYLLRKLLLPFLVAIALLGLFYPQYVIVTGLILIIRIFNWEKSQFYLSKNPQHYLFSGVGLGVSLLVILFYV LNSSNYAPIITASQAKILPEFGEAGRSVFFSQNYWDFFILGGRSGILPKQLFLPHILIVGLLLPILLKSKEGKNNNLDHG INFPRQLPLLKQISPNINLLFQILLAGVALFVIAHLLLFKLHLPSRYTNHSFRIVLAIGTAIVLCIILDRFFYWINQQLS CPKRKILGLIIIGILGILLISNMSLWKKISYPDYQKGKSPEIYQFFAQKPKDILIASLSEEANYIPTFSQRSVLFAWEYA IPYHLSYYSQIKQRATEFVWAQYHSDIQWMKNFINTYRIDFLILDREAFMPEYVIKNRWLRQWYYQMGNQIEINLQNGKT PAIVDTIDKCSVLETEKLWVLEAKCIE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68249; Mature: 68249
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYIQKIKQILIPSNYPKKSSTIFWLILSLTFTTIYSLLVIKEAFRGEYIVQDDARQHVFW CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHH MRRFLDPELFPNDLIADYFQSVAPWGYKTFYWLFSQVGIDPIFLNKLLPLGLSLVTTFYC HHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH FGLCFQILPIPFAGFLASVLLSQNLWFQDDIASGTPRAFLYPLFLAVLYYLLRKLLLPFL HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VAIALLGLFYPQYVIVTGLILIIRIFNWEKSQFYLSKNPQHYLFSGVGLGVSLLVILFYV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH LNSSNYAPIITASQAKILPEFGEAGRSVFFSQNYWDFFILGGRSGILPKQLFLPHILIVG HCCCCCCCEEECCHHHHCHHHHCCCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHH LLLPILLKSKEGKNNNLDHGINFPRQLPLLKQISPNINLLFQILLAGVALFVIAHLLLFK HHHHHHHCCCCCCCCCCCCCCCCCHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH LHLPSRYTNHSFRIVLAIGTAIVLCIILDRFFYWINQQLSCPKRKILGLIIIGILGILLI HHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH SNMSLWKKISYPDYQKGKSPEIYQFFAQKPKDILIASLSEEANYIPTFSQRSVLFAWEYA CCHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHEEEECCCCCCCCCCCCCCCEEEEEECC IPYHLSYYSQIKQRATEFVWAQYHSDIQWMKNFINTYRIDFLILDREAFMPEYVIKNRWL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHCHHHHHHHHHH RQWYYQMGNQIEINLQNGKTPAIVDTIDKCSVLETEKLWVLEAKCIE HHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEECCCCC >Mature Secondary Structure MYIQKIKQILIPSNYPKKSSTIFWLILSLTFTTIYSLLVIKEAFRGEYIVQDDARQHVFW CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHH MRRFLDPELFPNDLIADYFQSVAPWGYKTFYWLFSQVGIDPIFLNKLLPLGLSLVTTFYC HHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH FGLCFQILPIPFAGFLASVLLSQNLWFQDDIASGTPRAFLYPLFLAVLYYLLRKLLLPFL HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VAIALLGLFYPQYVIVTGLILIIRIFNWEKSQFYLSKNPQHYLFSGVGLGVSLLVILFYV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH LNSSNYAPIITASQAKILPEFGEAGRSVFFSQNYWDFFILGGRSGILPKQLFLPHILIVG HCCCCCCCEEECCHHHHCHHHHCCCCEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHH LLLPILLKSKEGKNNNLDHGINFPRQLPLLKQISPNINLLFQILLAGVALFVIAHLLLFK HHHHHHHCCCCCCCCCCCCCCCCCHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH LHLPSRYTNHSFRIVLAIGTAIVLCIILDRFFYWINQQLSCPKRKILGLIIIGILGILLI HHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH SNMSLWKKISYPDYQKGKSPEIYQFFAQKPKDILIASLSEEANYIPTFSQRSVLFAWEYA CCHHHHHHCCCCCCCCCCCCHHHHHHHCCCCHHEEEECCCCCCCCCCCCCCCEEEEEECC IPYHLSYYSQIKQRATEFVWAQYHSDIQWMKNFINTYRIDFLILDREAFMPEYVIKNRWL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHCHHHHHHHHHH RQWYYQMGNQIEINLQNGKTPAIVDTIDKCSVLETEKLWVLEAKCIE HHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA