| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476242
Identifier: 113476242
GI number: 113476242
Start: 4084112
End: 4085647
Strand: Reverse
Name: 113476242
Synonym: Tery_2635
Alternate gene names: NA
Gene position: 4085647-4084112 (Counterclockwise)
Preceding gene: 113476243
Following gene: 113476241
Centisome position: 52.72
GC content: 30.08
Gene sequence:
>1536_bases ATGAAGCAAATACTCAAAAAAAAAATTATTATTTTCGTCTGGAAAATTTTTATCTTAGGCTTAATTTTTGGAATTTCCTA TACCCAATATCCCCTATATACCTCAAACCAACATACTAAATTTTTACAAGGATTAGCCAAAGCTGGTAATGGTTATTTAA ACAAAGATTGGTTAGCCAATACATTAGACCCTCTACCTGCTTTTACTTTTTTAGTGAAAATCACTTCTACCTACTTCCAT GAAAATTTTTTCTACTTTTATTACATTCTAATTTTTGGCATCTATATTTATAGTATCCTTGGCATTGCCTCAGTAATTTT TAAAATTAATAGTTCGCGAATAAAGCTCCTAATTTATTTCCTCCTGATCCTGACTATTCACTGTCTAAAAATCCGAATTT TTGACTTTAAAACTCATGTACACCTCCACTATGGTTTAGCAGACCAATACATTCTCGGTGGATATTTTCAACCCTGTACA TTTGGAGTATTAATTATCTTTTCTATCTATACCTTTCTAAGAAAAAAACCTTTTTTAGCAGTCTTAGCTTTAGGGATAGC TGCAACTTTTCATCCCACATATCTTCCTAGTACCGCTTTACTGACTTTAGCTTACATGATCACAACTTATAAAAATGAAA AAAATCTCCAAAAATCATTATTAATAGGTACATTTTCATTCATCTTAGTTTTACCAGTAGTCAGTTATATGACTATTACT TTTCAACCTACATCTCCCGAACTTTTTCAAATATCTGAAAGCTTGCTTGTTAATAGAATTCCTCATCATTCCTTCCCCGA TATTTGGTTGACTGAACCCGCTGCTCCAACTCAAATTTTAGTAGTAGCGATCGCTCTCTATCTTTTGTACAAAACCAGAC TATTTTTTATCTTATTTTTTCCTTTTGCCACCGCAACTATTCTGACAATAACTCAAGTTTTTTCTAGTAGTAATACTTTA GCATTTCTTACCCCATGGCGCATCTCTGCTTTTTTGGTTCCTCTTTCTACTTGTATGATATTGGCTAATATTATTACTAT TATTTTTAATAAGTATCATTCTCAAATTCAGCAACACAAAAAAACCATAGAAATTTTCTCTGTCGTAGCAATATATCTGT TCATTCTTTCAGGGCTGGGAATGCAATTAGAAAAATTAACTATTAATCAGAAAGATACACCAATTATTATGGAATATGTC AAAGAAAATAAACAACCAGACGATATTTATTTAGTTCCTATAACTTCAGGTAAATTTGTTAACTTTAGAATTGCCACAGG TGCACCAATTTTAATTAATCTCAAGTCTCATCCCTATAAAGATATAGAAGTTATTGAATGGCACAACAGATTATTAATGG CACAACAATTTTATGATAATTCTGGTATAGCTCAATGTCAGGCTTTACAGAACTTAATTGATAAATATAGAATAAATTAT GTCATTATTGAAAATGAAAACTCTCTTAACTGTCTAAAAATAGAAAAAACTTATATGGATAATTTATATCAAATGTATAA AGTAACTGATAAATAA
Upstream 100 bases:
>100_bases TCAATAATTAATTTAGATTTTTTTTCATATTTTTTCTCTATTATTAACTTTTTTATCCATTAATTGTAACTTCTAGATAA TGGTATTAGTAACTTAAAAA
Downstream 100 bases:
>100_bases CCTCTTGCTTAAAACCACTTTTAACTTCCTTATCTGTGCATCCGTTGGAAAATTATTGTGGTGCATTCCTACTCAAATTT AATTAAAAAATGTTCCAACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 511; Mature: 511
Protein sequence:
>511_residues MKQILKKKIIIFVWKIFILGLIFGISYTQYPLYTSNQHTKFLQGLAKAGNGYLNKDWLANTLDPLPAFTFLVKITSTYFH ENFFYFYYILIFGIYIYSILGIASVIFKINSSRIKLLIYFLLILTIHCLKIRIFDFKTHVHLHYGLADQYILGGYFQPCT FGVLIIFSIYTFLRKKPFLAVLALGIAATFHPTYLPSTALLTLAYMITTYKNEKNLQKSLLIGTFSFILVLPVVSYMTIT FQPTSPELFQISESLLVNRIPHHSFPDIWLTEPAAPTQILVVAIALYLLYKTRLFFILFFPFATATILTITQVFSSSNTL AFLTPWRISAFLVPLSTCMILANIITIIFNKYHSQIQQHKKTIEIFSVVAIYLFILSGLGMQLEKLTINQKDTPIIMEYV KENKQPDDIYLVPITSGKFVNFRIATGAPILINLKSHPYKDIEVIEWHNRLLMAQQFYDNSGIAQCQALQNLIDKYRINY VIIENENSLNCLKIEKTYMDNLYQMYKVTDK
Sequences:
>Translated_511_residues MKQILKKKIIIFVWKIFILGLIFGISYTQYPLYTSNQHTKFLQGLAKAGNGYLNKDWLANTLDPLPAFTFLVKITSTYFH ENFFYFYYILIFGIYIYSILGIASVIFKINSSRIKLLIYFLLILTIHCLKIRIFDFKTHVHLHYGLADQYILGGYFQPCT FGVLIIFSIYTFLRKKPFLAVLALGIAATFHPTYLPSTALLTLAYMITTYKNEKNLQKSLLIGTFSFILVLPVVSYMTIT FQPTSPELFQISESLLVNRIPHHSFPDIWLTEPAAPTQILVVAIALYLLYKTRLFFILFFPFATATILTITQVFSSSNTL AFLTPWRISAFLVPLSTCMILANIITIIFNKYHSQIQQHKKTIEIFSVVAIYLFILSGLGMQLEKLTINQKDTPIIMEYV KENKQPDDIYLVPITSGKFVNFRIATGAPILINLKSHPYKDIEVIEWHNRLLMAQQFYDNSGIAQCQALQNLIDKYRINY VIIENENSLNCLKIEKTYMDNLYQMYKVTDK >Mature_511_residues MKQILKKKIIIFVWKIFILGLIFGISYTQYPLYTSNQHTKFLQGLAKAGNGYLNKDWLANTLDPLPAFTFLVKITSTYFH ENFFYFYYILIFGIYIYSILGIASVIFKINSSRIKLLIYFLLILTIHCLKIRIFDFKTHVHLHYGLADQYILGGYFQPCT FGVLIIFSIYTFLRKKPFLAVLALGIAATFHPTYLPSTALLTLAYMITTYKNEKNLQKSLLIGTFSFILVLPVVSYMTIT FQPTSPELFQISESLLVNRIPHHSFPDIWLTEPAAPTQILVVAIALYLLYKTRLFFILFFPFATATILTITQVFSSSNTL AFLTPWRISAFLVPLSTCMILANIITIIFNKYHSQIQQHKKTIEIFSVVAIYLFILSGLGMQLEKLTINQKDTPIIMEYV KENKQPDDIYLVPITSGKFVNFRIATGAPILINLKSHPYKDIEVIEWHNRLLMAQQFYDNSGIAQCQALQNLIDKYRINY VIIENENSLNCLKIEKTYMDNLYQMYKVTDK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59099; Mature: 59099
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQILKKKIIIFVWKIFILGLIFGISYTQYPLYTSNQHTKFLQGLAKAGNGYLNKDWLAN CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHCCCCCCCCHHHH TLDPLPAFTFLVKITSTYFHENFFYFYYILIFGIYIYSILGIASVIFKINSSRIKLLIYF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LLILTIHCLKIRIFDFKTHVHLHYGLADQYILGGYFQPCTFGVLIIFSIYTFLRKKPFLA HHHHHHHHHHEEEEEEEEEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHH VLALGIAATFHPTYLPSTALLTLAYMITTYKNEKNLQKSLLIGTFSFILVLPVVSYMTIT HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEEE FQPTSPELFQISESLLVNRIPHHSFPDIWLTEPAAPTQILVVAIALYLLYKTRLFFILFF ECCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH PFATATILTITQVFSSSNTLAFLTPWRISAFLVPLSTCMILANIITIIFNKYHSQIQQHK HHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KTIEIFSVVAIYLFILSGLGMQLEKLTINQKDTPIIMEYVKENKQPDDIYLVPITSGKFV HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCCCEE NFRIATGAPILINLKSHPYKDIEVIEWHNRLLMAQQFYDNSGIAQCQALQNLIDKYRINY EEEEECCCEEEEEECCCCCCCCHHEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCE VIIENENSLNCLKIEKTYMDNLYQMYKVTDK EEEECCCCCEEEEEHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKQILKKKIIIFVWKIFILGLIFGISYTQYPLYTSNQHTKFLQGLAKAGNGYLNKDWLAN CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHCCCCCCCCHHHH TLDPLPAFTFLVKITSTYFHENFFYFYYILIFGIYIYSILGIASVIFKINSSRIKLLIYF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LLILTIHCLKIRIFDFKTHVHLHYGLADQYILGGYFQPCTFGVLIIFSIYTFLRKKPFLA HHHHHHHHHHEEEEEEEEEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHH VLALGIAATFHPTYLPSTALLTLAYMITTYKNEKNLQKSLLIGTFSFILVLPVVSYMTIT HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEEE FQPTSPELFQISESLLVNRIPHHSFPDIWLTEPAAPTQILVVAIALYLLYKTRLFFILFF ECCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH PFATATILTITQVFSSSNTLAFLTPWRISAFLVPLSTCMILANIITIIFNKYHSQIQQHK HHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KTIEIFSVVAIYLFILSGLGMQLEKLTINQKDTPIIMEYVKENKQPDDIYLVPITSGKFV HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCCCEE NFRIATGAPILINLKSHPYKDIEVIEWHNRLLMAQQFYDNSGIAQCQALQNLIDKYRINY EEEEECCCEEEEEECCCCCCCCHHEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCE VIIENENSLNCLKIEKTYMDNLYQMYKVTDK EEEECCCCCEEEEEHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA