| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476161
Identifier: 113476161
GI number: 113476161
Start: 3927722
End: 3928495
Strand: Reverse
Name: 113476161
Synonym: Tery_2548
Alternate gene names: NA
Gene position: 3928495-3927722 (Counterclockwise)
Preceding gene: 113476162
Following gene: 113476156
Centisome position: 50.69
GC content: 38.63
Gene sequence:
>774_bases ATGCCTAACCCATTTCCCGGAATGAACCCATACCTCGAACAACCTGAACTTTGGCCTGAATTTCATAATCAACTGGTGGC AGCGATCGCTAGAATGTTAACTCCCCAGTTATTACCTAAATATCAGTTAGTGACTGATAAATGGGTATATCAAATGGGTA ACTCAAAACAGATCGTTATTAGTCAAACAGATGTTAATGTGCAAAAAAATCAAGATAATTCACTCCCACTAACAACAAAA GCCTCCACACCACAACCTTTCAGTCAGCCTATTATAGTAACTATTCCTATGGGAGAAGAACTTGAGCAGGATCATATTGA AGTTAAGGATACTACCACAAACGAAGTAGTTACAATTATTGAAGTTATTTCTTTCGTAAACAAAAAAGGAGAAGGTCGTA ATAAATATGAAACTAGACGGAAACAATTTTTAGAGAGTAGGACTCATCTGGTGGAAATTGACCTTTTGCGAGAGGGAGAA CTTTTACCTTCCTTAACTAGCACTAAAAGTCACTATCGAATTTTGATCAGTCCCTATAACATTCGCCCTATTGCCGAGTT GTATCCTTTTAATTTGAGCGATCCCATTCCTCAATTTTCACTACCTCTATTGGCTGGAGATACTCAACCAATAGTAGACT TACAGACACTAGTAAATGAGTTGTACGAACAGTTGGGGTATGAGCATTTTATTGGTTATAGCGATCGCCCTCCTTTACCT TGGTCTGTGGCTGATGTTCTGCCATTTGTTAAGGGAATGGAGAATAGGCAGTAG
Upstream 100 bases:
>100_bases GCTAACTATTCGTGAGTTCGGACTTCAACCCTCACCCATAAGACAAATTTCAGTAAGCCCTAATTAAAATAAATATAAAT ACTAATTTTTCCTTTTTTTT
Downstream 100 bases:
>100_bases GCTCCTATTTTAGCACACCATTTCTCAAATAATTACCTGAAACTATATTGACTGCAGAAATTTTTAGTATGTTGCATCAT GCCCAGCAGCATAGTCTATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 257; Mature: 256
Protein sequence:
>257_residues MPNPFPGMNPYLEQPELWPEFHNQLVAAIARMLTPQLLPKYQLVTDKWVYQMGNSKQIVISQTDVNVQKNQDNSLPLTTK ASTPQPFSQPIIVTIPMGEELEQDHIEVKDTTTNEVVTIIEVISFVNKKGEGRNKYETRRKQFLESRTHLVEIDLLREGE LLPSLTSTKSHYRILISPYNIRPIAELYPFNLSDPIPQFSLPLLAGDTQPIVDLQTLVNELYEQLGYEHFIGYSDRPPLP WSVADVLPFVKGMENRQ
Sequences:
>Translated_257_residues MPNPFPGMNPYLEQPELWPEFHNQLVAAIARMLTPQLLPKYQLVTDKWVYQMGNSKQIVISQTDVNVQKNQDNSLPLTTK ASTPQPFSQPIIVTIPMGEELEQDHIEVKDTTTNEVVTIIEVISFVNKKGEGRNKYETRRKQFLESRTHLVEIDLLREGE LLPSLTSTKSHYRILISPYNIRPIAELYPFNLSDPIPQFSLPLLAGDTQPIVDLQTLVNELYEQLGYEHFIGYSDRPPLP WSVADVLPFVKGMENRQ >Mature_256_residues PNPFPGMNPYLEQPELWPEFHNQLVAAIARMLTPQLLPKYQLVTDKWVYQMGNSKQIVISQTDVNVQKNQDNSLPLTTKA STPQPFSQPIIVTIPMGEELEQDHIEVKDTTTNEVVTIIEVISFVNKKGEGRNKYETRRKQFLESRTHLVEIDLLREGEL LPSLTSTKSHYRILISPYNIRPIAELYPFNLSDPIPQFSLPLLAGDTQPIVDLQTLVNELYEQLGYEHFIGYSDRPPLPW SVADVLPFVKGMENRQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29482; Mature: 29351
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNPFPGMNPYLEQPELWPEFHNQLVAAIARMLTPQLLPKYQLVTDKWVYQMGNSKQIVI CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHCCCCCEEEE SQTDVNVQKNQDNSLPLTTKASTPQPFSQPIIVTIPMGEELEQDHIEVKDTTTNEVVTII EECCCCEECCCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCHHHHHHHH EVISFVNKKGEGRNKYETRRKQFLESRTHLVEIDLLREGELLPSLTSTKSHYRILISPYN HHHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHCCCCCEEEEEECCC IRPIAELYPFNLSDPIPQFSLPLLAGDTQPIVDLQTLVNELYEQLGYEHFIGYSDRPPLP CCCHHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCC WSVADVLPFVKGMENRQ CCHHHHHHHHHCCCCCC >Mature Secondary Structure PNPFPGMNPYLEQPELWPEFHNQLVAAIARMLTPQLLPKYQLVTDKWVYQMGNSKQIVI CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHCCCCCEEEE SQTDVNVQKNQDNSLPLTTKASTPQPFSQPIIVTIPMGEELEQDHIEVKDTTTNEVVTII EECCCCEECCCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCHHHHHHHH EVISFVNKKGEGRNKYETRRKQFLESRTHLVEIDLLREGELLPSLTSTKSHYRILISPYN HHHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHCCCCCEEEEEECCC IRPIAELYPFNLSDPIPQFSLPLLAGDTQPIVDLQTLVNELYEQLGYEHFIGYSDRPPLP CCCHHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCC WSVADVLPFVKGMENRQ CCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA