| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476162
Identifier: 113476162
GI number: 113476162
Start: 3929540
End: 3932383
Strand: Reverse
Name: 113476162
Synonym: Tery_2549
Alternate gene names: NA
Gene position: 3932383-3929540 (Counterclockwise)
Preceding gene: 113476163
Following gene: 113476161
Centisome position: 50.74
GC content: 43.6
Gene sequence:
>2844_bases ATGAATATTTTTAATCAAGTTTCCCAATTTTTTAGGCTGAACAGTGGGGCTTATCTGAGTCTTGTTATTGTACCGCAAAT TATAAGTATAGCAATTAACATACCAATTCTACAAGCCCAAGAACTGCCGCCCTCAACCGTTATTTCAGAATCAGAACCTG ACACAGAAACCATTAGTCAGAATTTCGACCTGATGCCCTTGGCCATCTATGTCGGCGATCGCACAGTGAATCCCGGAACT TTCGTCCGCGGTGCAGAAGATGGCGAAAAAGCAATTGACTTTGACAAATGGCTGATTGCCTACGATGATGTCATCAAAGC CCTAAAGTTTAACACCACTCCCCTAGATAACGGAAAAGTAGAACTGCGGTCGCCTGGTTTAGCTTTACAAATTGACCTTA ACGAATTAGCGATCGATGATCAACTCGGCATGGCTTTGAGCGTAGAACAAATTCGTGAACTATTAGGTGTTCCCGTAGAA TTTGATATAGAAGAATATGCAATTATACTCAACCCCGACTGGCTGGGAAAAAACCTACCCCAAACAAATATCCGTAGCAA CCAACGACAGCTCAACCTAGAAGGCTTACCCCGCATCTCAGCCCCCCCCATCACCCTCAGTATCATCGGACAAGAAGCAA ACATCTCCGGCAGTGGCAACCAAATCGACGACTACACTGGCGAACTCGTTGGTATCGGGACTCTATTCGGAGGCAGTTGG TACCTGAATATTGACCAAGAAGACCTCACCGATCGCCAAACATGGAAACTCAACGAACTCCAATATATGCGACAAACACC GACAACGGACTATATCATCGGTGACCAAGAAACATTGTGGCCAGAAGGTAGCAGTACCTACACCGGATTTACTGCCATTC GGCGGTTCGGGTTTGCGCCACCCATCACCTCTTCCGGTGGAAACGAAGGCTTCAACCCAGAACAAAGATTGAATTCCAGT CGCTTACAACGAGATATTCGGGGCAGAGCAGAGCCAGGCACATTGGTACAGCTTGTTAACTCTATCAGTAAGAGGGTTTT GGCAGAACAGTTAGTAGACTCATCCGGTATTTATCGCTTTGAAGACGTGACTACAGTCTCCTCTTCCCTCCGTGGTAGCC CTTCAGCCAATAATTATAAATTGCGTCTCTACCCCGATGGGCGACTGAGCGCAGACCCAGAAATTCGGGAAGCCGAGTTC TTTTCACTGCCTGGTCAGCTCAGTCGTGGGACTGCAGCCTTACTGATATCGGGTGGATTTGAGCGATCGCAAAATAGCGA GACCTTCTTCGGAACTATGGAGGATGAAATGCAAGGGGGAGTTTTGTACCGTTGGGGTGCCACAGACAACATCACCCTAG GTACAGGACTTTTTTATGACCAGCAACTGAAAGGTATGGGGGAAGTATTTTTTCAACCAGGAAATTTGCCTTTAAAAATT ACAGCGACAGCAATGCTCAATAGTGATGAAAGAGCCGACAACAAACGTAGCAATATTCGCTATGATTTGAATGTTCGTTT TAAACCGAAGCAGGGTATAGATTTTGAGTTTGATAAGGATGATTTATCAGAAAGATTTAGAGCAAATTGGGATTTGAGTC CAGATGTTCGCTTGTCATTGAACAGTAATAATAACGCTCAAGATGCACGAATTAGGTGGCGACTTTTTCCAGGACTCACC ACAAATGTAGGTTGGGATGTGGGCGAAAAAGTTTTGGTAGGGGGACTCGATGTCAGTAGTTCTTTTGGTAATTTGTTGTT CCGTAATAACATTGATATCGATGAAGATCAAAATGTTAACTGGAATCTGTTTTCTCGTTATCAGAATCTCACCCTCCGAC ACCGCATGAGAAAGCAGCGGTGGGATACAGATCTTGAATATTTTTTCCTCAAGTCTAAAAGTTTGTATGATTATAATCAT TCCCTTTTTCTGAACTTAGAGATGGATCAGAATGATAACAACTCTAGCGATAGACTCGCAACAGTTGGTTGGCGTTATAA ACCTCGTTCCCAAGTAGGCGATCGCTTTGCAGATTGGATTTTTGATATTGGTTACGGCATCGGAACAGAAGGTTCAGGCT TGCAAGCTTCGATCACAACCGCAAAAATCCCAGGGTTATATGTCACAGCAAAGTATCAAAATATTTCCATGAGCAATAAC AGCTCTAGATTTAGTTTACAGATATCCTCATCTGCTTTTTTGTCATCCTCCGTAAGTTTTGGTAAGAGTCGTTTTGAGAG ATTACGCACAGAAGGGGGACTAGTGTTAATCCCTTTTTTGGATAAAAACGGCAATGATCGTAAAGATAGAGGAGAAAAAA TCTATACCAAAGGGCTAGAGGATGAAACAGCTGAATTTTTATTCTTGATTAATGATCAGGATGTCAGGCGATTTAGTAGT TATAGTCCAGACCTGCGCAAAAATGGGATTTTTGTGCGTTTGCCTCCAGATACCTACCGTTTTGAGCTTGATCCGATAGG TATTCCCCTGGGGTTGAAAAGTAATCAATTAGTTTCTGCTGTCGAGGTGAAAGCTGGTAGTTATACACCCATTTATATAC CCCTAACAACTGCCTATGCTTTGTTAGGTGTGGTATTGGATGATGCGGGGAACCCTGTGGGTGGTTTACGAGTAGAGGCG ATCCCCCGCAGTGGAGAAGGAGCAAAAATATTATCAATTACCAATGGTGCAGGAATTTATTATTTAGAGTCCCTCGGTCC TGGTGAATATGATTTACTCATTGATGGTGTACCAGCTCAACCCCAGAGTATTCGCTTTGATGAAACCTCAGAGGTATTTA CAGAAATTGATTTACTCTATCGGGAGCCAGCGGACAGAGATTAA
Upstream 100 bases:
>100_bases TCAGGCTCCAGAACCGTGGGAATTTTTTCCGGCTCAATTTATCCGGCCATAGTAAAAGATACCAAAGGCCTCTGTATTAA GAATTGGTATCAAGCAATTT
Downstream 100 bases:
>100_bases AACCATCCCTAAGCAGCAGTCAAAAGTTAGATTTTAAAGAATCTAAATTTTGACCCCCTCAGTCATTTCAGGAAATTATT TCCCATCTAAAGTTTAAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 947; Mature: 947
Protein sequence:
>947_residues MNIFNQVSQFFRLNSGAYLSLVIVPQIISIAINIPILQAQELPPSTVISESEPDTETISQNFDLMPLAIYVGDRTVNPGT FVRGAEDGEKAIDFDKWLIAYDDVIKALKFNTTPLDNGKVELRSPGLALQIDLNELAIDDQLGMALSVEQIRELLGVPVE FDIEEYAIILNPDWLGKNLPQTNIRSNQRQLNLEGLPRISAPPITLSIIGQEANISGSGNQIDDYTGELVGIGTLFGGSW YLNIDQEDLTDRQTWKLNELQYMRQTPTTDYIIGDQETLWPEGSSTYTGFTAIRRFGFAPPITSSGGNEGFNPEQRLNSS RLQRDIRGRAEPGTLVQLVNSISKRVLAEQLVDSSGIYRFEDVTTVSSSLRGSPSANNYKLRLYPDGRLSADPEIREAEF FSLPGQLSRGTAALLISGGFERSQNSETFFGTMEDEMQGGVLYRWGATDNITLGTGLFYDQQLKGMGEVFFQPGNLPLKI TATAMLNSDERADNKRSNIRYDLNVRFKPKQGIDFEFDKDDLSERFRANWDLSPDVRLSLNSNNNAQDARIRWRLFPGLT TNVGWDVGEKVLVGGLDVSSSFGNLLFRNNIDIDEDQNVNWNLFSRYQNLTLRHRMRKQRWDTDLEYFFLKSKSLYDYNH SLFLNLEMDQNDNNSSDRLATVGWRYKPRSQVGDRFADWIFDIGYGIGTEGSGLQASITTAKIPGLYVTAKYQNISMSNN SSRFSLQISSSAFLSSSVSFGKSRFERLRTEGGLVLIPFLDKNGNDRKDRGEKIYTKGLEDETAEFLFLINDQDVRRFSS YSPDLRKNGIFVRLPPDTYRFELDPIGIPLGLKSNQLVSAVEVKAGSYTPIYIPLTTAYALLGVVLDDAGNPVGGLRVEA IPRSGEGAKILSITNGAGIYYLESLGPGEYDLLIDGVPAQPQSIRFDETSEVFTEIDLLYREPADRD
Sequences:
>Translated_947_residues MNIFNQVSQFFRLNSGAYLSLVIVPQIISIAINIPILQAQELPPSTVISESEPDTETISQNFDLMPLAIYVGDRTVNPGT FVRGAEDGEKAIDFDKWLIAYDDVIKALKFNTTPLDNGKVELRSPGLALQIDLNELAIDDQLGMALSVEQIRELLGVPVE FDIEEYAIILNPDWLGKNLPQTNIRSNQRQLNLEGLPRISAPPITLSIIGQEANISGSGNQIDDYTGELVGIGTLFGGSW YLNIDQEDLTDRQTWKLNELQYMRQTPTTDYIIGDQETLWPEGSSTYTGFTAIRRFGFAPPITSSGGNEGFNPEQRLNSS RLQRDIRGRAEPGTLVQLVNSISKRVLAEQLVDSSGIYRFEDVTTVSSSLRGSPSANNYKLRLYPDGRLSADPEIREAEF FSLPGQLSRGTAALLISGGFERSQNSETFFGTMEDEMQGGVLYRWGATDNITLGTGLFYDQQLKGMGEVFFQPGNLPLKI TATAMLNSDERADNKRSNIRYDLNVRFKPKQGIDFEFDKDDLSERFRANWDLSPDVRLSLNSNNNAQDARIRWRLFPGLT TNVGWDVGEKVLVGGLDVSSSFGNLLFRNNIDIDEDQNVNWNLFSRYQNLTLRHRMRKQRWDTDLEYFFLKSKSLYDYNH SLFLNLEMDQNDNNSSDRLATVGWRYKPRSQVGDRFADWIFDIGYGIGTEGSGLQASITTAKIPGLYVTAKYQNISMSNN SSRFSLQISSSAFLSSSVSFGKSRFERLRTEGGLVLIPFLDKNGNDRKDRGEKIYTKGLEDETAEFLFLINDQDVRRFSS YSPDLRKNGIFVRLPPDTYRFELDPIGIPLGLKSNQLVSAVEVKAGSYTPIYIPLTTAYALLGVVLDDAGNPVGGLRVEA IPRSGEGAKILSITNGAGIYYLESLGPGEYDLLIDGVPAQPQSIRFDETSEVFTEIDLLYREPADRD >Mature_947_residues MNIFNQVSQFFRLNSGAYLSLVIVPQIISIAINIPILQAQELPPSTVISESEPDTETISQNFDLMPLAIYVGDRTVNPGT FVRGAEDGEKAIDFDKWLIAYDDVIKALKFNTTPLDNGKVELRSPGLALQIDLNELAIDDQLGMALSVEQIRELLGVPVE FDIEEYAIILNPDWLGKNLPQTNIRSNQRQLNLEGLPRISAPPITLSIIGQEANISGSGNQIDDYTGELVGIGTLFGGSW YLNIDQEDLTDRQTWKLNELQYMRQTPTTDYIIGDQETLWPEGSSTYTGFTAIRRFGFAPPITSSGGNEGFNPEQRLNSS RLQRDIRGRAEPGTLVQLVNSISKRVLAEQLVDSSGIYRFEDVTTVSSSLRGSPSANNYKLRLYPDGRLSADPEIREAEF FSLPGQLSRGTAALLISGGFERSQNSETFFGTMEDEMQGGVLYRWGATDNITLGTGLFYDQQLKGMGEVFFQPGNLPLKI TATAMLNSDERADNKRSNIRYDLNVRFKPKQGIDFEFDKDDLSERFRANWDLSPDVRLSLNSNNNAQDARIRWRLFPGLT TNVGWDVGEKVLVGGLDVSSSFGNLLFRNNIDIDEDQNVNWNLFSRYQNLTLRHRMRKQRWDTDLEYFFLKSKSLYDYNH SLFLNLEMDQNDNNSSDRLATVGWRYKPRSQVGDRFADWIFDIGYGIGTEGSGLQASITTAKIPGLYVTAKYQNISMSNN SSRFSLQISSSAFLSSSVSFGKSRFERLRTEGGLVLIPFLDKNGNDRKDRGEKIYTKGLEDETAEFLFLINDQDVRRFSS YSPDLRKNGIFVRLPPDTYRFELDPIGIPLGLKSNQLVSAVEVKAGSYTPIYIPLTTAYALLGVVLDDAGNPVGGLRVEA IPRSGEGAKILSITNGAGIYYLESLGPGEYDLLIDGVPAQPQSIRFDETSEVFTEIDLLYREPADRD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 105993; Mature: 105993
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIFNQVSQFFRLNSGAYLSLVIVPQIISIAINIPILQAQELPPSTVISESEPDTETISQ CCHHHHHHHHHCCCCCCEEEEEEHHHHEEEEEECCEEECCCCCCCCCCCCCCCCHHHHHC NFDLMPLAIYVGDRTVNPGTFVRGAEDGEKAIDFDKWLIAYDDVIKALKFNTTPLDNGKV CCCEEEEEEEECCEECCCCCEEECCCCCCHHCCHHHHEEHHHHHHHHHCCCCCCCCCCEE ELRSPGLALQIDLNELAIDDQLGMALSVEQIRELLGVPVEFDIEEYAIILNPDWLGKNLP EEECCCEEEEEEHHHEEECCCCCCEECHHHHHHHHCCCEEECCCCEEEEECCCCCCCCCC QTNIRSNQRQLNLEGLPRISAPPITLSIIGQEANISGSGNQIDDYTGELVGIGTLFGGSW CCCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCEE YLNIDQEDLTDRQTWKLNELQYMRQTPTTDYIIGDQETLWPEGSSTYTGFTAIRRFGFAP EEEECHHHCCCCCCEEHHHHHHHHCCCCCCEEECCCCEECCCCCCCCHHHHHHHHHCCCC PITSSGGNEGFNPEQRLNSSRLQRDIRGRAEPGTLVQLVNSISKRVLAEQLVDSSGIYRF CCCCCCCCCCCCHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE EDVTTVSSSLRGSPSANNYKLRLYPDGRLSADPEIREAEFFSLPGQLSRGTAALLISGGF EHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCCCCCEEEEEEECCC ERSQNSETFFGTMEDEMQGGVLYRWGATDNITLGTGLFYDQQLKGMGEVFFQPGNLPLKI CCCCCCCEEEEEEHHHHCCCEEEEECCCCCEEECCCCEEHHHHCCCCCEEECCCCCEEEE TATAMLNSDERADNKRSNIRYDLNVRFKPKQGIDFEFDKDDLSERFRANWDLSPDVRLSL EEEEEECCCHHCCCCCCCEEEEEEEEECCCCCCCCEECHHHHHHHHHCCCCCCCCEEEEE NSNNNAQDARIRWRLFPGLTTNVGWDVGEKVLVGGLDVSSSFGNLLFRNNIDIDEDQNVN CCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCC WNLFSRYQNLTLRHRMRKQRWDTDLEYFFLKSKSLYDYNHSLFLNLEMDQNDNNSSDRLA HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCEEEEEEEECCCCCCCCCEEE TVGWRYKPRSQVGDRFADWIFDIGYGIGTEGSGLQASITTAKIPGLYVTAKYQNISMSNN EECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEEEECCC SSRFSLQISSSAFLSSSVSFGKSRFERLRTEGGLVLIPFLDKNGNDRKDRGEKIYTKGLE CCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHCCCCCEECCCC DETAEFLFLINDQDVRRFSSYSPDLRKNGIFVRLPPDTYRFELDPIGIPLGLKSNQLVSA CCCEEEEEEECCHHHHHHHCCCCCHHHCCEEEEECCCCEEEEECCCCEECCCCCCCEEEE VEVKAGSYTPIYIPLTTAYALLGVVLDDAGNPVGGLRVEAIPRSGEGAKILSITNGAGIY EEECCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEEECCCCEE YLESLGPGEYDLLIDGVPAQPQSIRFDETSEVFTEIDLLYREPADRD EEECCCCCCEEEEEECCCCCCCCEECCCHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MNIFNQVSQFFRLNSGAYLSLVIVPQIISIAINIPILQAQELPPSTVISESEPDTETISQ CCHHHHHHHHHCCCCCCEEEEEEHHHHEEEEEECCEEECCCCCCCCCCCCCCCCHHHHHC NFDLMPLAIYVGDRTVNPGTFVRGAEDGEKAIDFDKWLIAYDDVIKALKFNTTPLDNGKV CCCEEEEEEEECCEECCCCCEEECCCCCCHHCCHHHHEEHHHHHHHHHCCCCCCCCCCEE ELRSPGLALQIDLNELAIDDQLGMALSVEQIRELLGVPVEFDIEEYAIILNPDWLGKNLP EEECCCEEEEEEHHHEEECCCCCCEECHHHHHHHHCCCEEECCCCEEEEECCCCCCCCCC QTNIRSNQRQLNLEGLPRISAPPITLSIIGQEANISGSGNQIDDYTGELVGIGTLFGGSW CCCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCEE YLNIDQEDLTDRQTWKLNELQYMRQTPTTDYIIGDQETLWPEGSSTYTGFTAIRRFGFAP EEEECHHHCCCCCCEEHHHHHHHHCCCCCCEEECCCCEECCCCCCCCHHHHHHHHHCCCC PITSSGGNEGFNPEQRLNSSRLQRDIRGRAEPGTLVQLVNSISKRVLAEQLVDSSGIYRF CCCCCCCCCCCCHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE EDVTTVSSSLRGSPSANNYKLRLYPDGRLSADPEIREAEFFSLPGQLSRGTAALLISGGF EHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCCCCCEEEEEEECCC ERSQNSETFFGTMEDEMQGGVLYRWGATDNITLGTGLFYDQQLKGMGEVFFQPGNLPLKI CCCCCCCEEEEEEHHHHCCCEEEEECCCCCEEECCCCEEHHHHCCCCCEEECCCCCEEEE TATAMLNSDERADNKRSNIRYDLNVRFKPKQGIDFEFDKDDLSERFRANWDLSPDVRLSL EEEEEECCCHHCCCCCCCEEEEEEEEECCCCCCCCEECHHHHHHHHHCCCCCCCCEEEEE NSNNNAQDARIRWRLFPGLTTNVGWDVGEKVLVGGLDVSSSFGNLLFRNNIDIDEDQNVN CCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCC WNLFSRYQNLTLRHRMRKQRWDTDLEYFFLKSKSLYDYNHSLFLNLEMDQNDNNSSDRLA HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCEEEEEEEECCCCCCCCCEEE TVGWRYKPRSQVGDRFADWIFDIGYGIGTEGSGLQASITTAKIPGLYVTAKYQNISMSNN EECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEEEECCC SSRFSLQISSSAFLSSSVSFGKSRFERLRTEGGLVLIPFLDKNGNDRKDRGEKIYTKGLE CCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHCCCCCEECCCC DETAEFLFLINDQDVRRFSSYSPDLRKNGIFVRLPPDTYRFELDPIGIPLGLKSNQLVSA CCCEEEEEEECCHHHHHHHCCCCCHHHCCEEEEECCCCEEEEECCCCEECCCCCCCEEEE VEVKAGSYTPIYIPLTTAYALLGVVLDDAGNPVGGLRVEAIPRSGEGAKILSITNGAGIY EEECCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEEECCCCEE YLESLGPGEYDLLIDGVPAQPQSIRFDETSEVFTEIDLLYREPADRD EEECCCCCCEEEEEECCCCCCCCEECCCHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA