Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113476119
Identifier: 113476119
GI number: 113476119
Start: 3859190
End: 3859936
Strand: Reverse
Name: 113476119
Synonym: Tery_2500
Alternate gene names: NA
Gene position: 3859936-3859190 (Counterclockwise)
Preceding gene: 113476120
Following gene: 113476118
Centisome position: 49.8
GC content: 43.37
Gene sequence:
>747_bases ATGGTTAATTCAAAAAACTGGCATTCTGGAACGTCTTTGTTGTTGACTTTAGGCATGACATTAGCTACAGCAACTCCTGG TTTAATGTCAAAACAAGCTATGGCTCAATTTAACGGACCAAGACAATACCCAGGCTACCAACAAAGACAATACCCAGGCT ACCAACAAAGACGATATCCAGGCTACCAACACAGACGATATCCAGGTAACCCAAGAGGGCCGTTGTCTGTAGCAAGGATA CGAGCAGGAAAGCTTATTCCTATAGAATATAAGGAAGCAGAAAAGGTTGTGATAACTCCAGATGAGTCGATGAGGTTAAG GTTGAGGGTGACTAAAGATATTAGGGATGCTCAAGGAAGAGTGGTTATACCTTTTGGTGGTGAGATAGAAGGTGAACTAC GACCTGTTTCAAATGGGACTCAGTTTTTTGCTGAACAATTAATTATTGGCGATCGCCGTAGGTTTCCTATTAATGCTGTT TCTCAAGTAATTACTGAGACTGAAGAAATAACAAAAGGTGCAAGCGCTGGGGATATCTTGAAGGGTGCTGCTGTGGGTGG TGGTGCTGCTGCTTTATTATCTGCGGTTCTTGGAGATCGGGTTCTGGCTACGGAAAGGATATTAATAGGTGCGGGTTTAG GTGCTTTAGGTGGAGTGTTATTGGGTCGGGAAGAAGGGGAGGTAGTTGTTATTTATCCAGAGGATGATTTAGAATTGAGG TTGCGTTCTGATTTTGCGTTGCGCTAG
Upstream 100 bases:
>100_bases CAAAAGGAAATAAAAATTTAGATGCACGAGAGCTTAACTGATAACTAATGACCTTAGGCGTCTGTACTGATAACTGAATA TTGGAGGATAGATATTACTT
Downstream 100 bases:
>100_bases TTTTGGGTTCAGAAGTTAGCTGTGAAATGAATTCTTGTAAGAATTGCTGCCTTGAGCGTATATATTGCTTGGGTTATGGG AGTGGATATCGCGTCTCAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 248; Mature: 248
Protein sequence:
>248_residues MVNSKNWHSGTSLLLTLGMTLATATPGLMSKQAMAQFNGPRQYPGYQQRQYPGYQQRRYPGYQHRRYPGNPRGPLSVARI RAGKLIPIEYKEAEKVVITPDESMRLRLRVTKDIRDAQGRVVIPFGGEIEGELRPVSNGTQFFAEQLIIGDRRRFPINAV SQVITETEEITKGASAGDILKGAAVGGGAAALLSAVLGDRVLATERILIGAGLGALGGVLLGREEGEVVVIYPEDDLELR LRSDFALR
Sequences:
>Translated_248_residues MVNSKNWHSGTSLLLTLGMTLATATPGLMSKQAMAQFNGPRQYPGYQQRQYPGYQQRRYPGYQHRRYPGNPRGPLSVARI RAGKLIPIEYKEAEKVVITPDESMRLRLRVTKDIRDAQGRVVIPFGGEIEGELRPVSNGTQFFAEQLIIGDRRRFPINAV SQVITETEEITKGASAGDILKGAAVGGGAAALLSAVLGDRVLATERILIGAGLGALGGVLLGREEGEVVVIYPEDDLELR LRSDFALR >Mature_248_residues MVNSKNWHSGTSLLLTLGMTLATATPGLMSKQAMAQFNGPRQYPGYQQRQYPGYQQRRYPGYQHRRYPGNPRGPLSVARI RAGKLIPIEYKEAEKVVITPDESMRLRLRVTKDIRDAQGRVVIPFGGEIEGELRPVSNGTQFFAEQLIIGDRRRFPINAV SQVITETEEITKGASAGDILKGAAVGGGAAALLSAVLGDRVLATERILIGAGLGALGGVLLGREEGEVVVIYPEDDLELR LRSDFALR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27086; Mature: 27086
Theoretical pI: Translated: 9.98; Mature: 9.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNSKNWHSGTSLLLTLGMTLATATPGLMSKQAMAQFNGPRQYPGYQQRQYPGYQQRRYP CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHCCC GYQHRRYPGNPRGPLSVARIRAGKLIPIEYKEAEKVVITPDESMRLRLRVTKDIRDAQGR CCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCEEEECCCCCEEEEEEEECCHHCCCCE VVIPFGGEIEGELRPVSNGTQFFAEQLIIGDRRRFPINAVSQVITETEEITKGASAGDIL EEEEECCCCCCEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHH KGAAVGGGAAALLSAVLGDRVLATERILIGAGLGALGGVLLGREEGEVVVIYPEDDLELR HCCCCCCHHHHHHHHHHCCHHHHHCEEEEECCHHHHHHEEEECCCCCEEEEECCCCCEEE LRSDFALR ECCCCCCC >Mature Secondary Structure MVNSKNWHSGTSLLLTLGMTLATATPGLMSKQAMAQFNGPRQYPGYQQRQYPGYQQRRYP CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHCCC GYQHRRYPGNPRGPLSVARIRAGKLIPIEYKEAEKVVITPDESMRLRLRVTKDIRDAQGR CCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCEEEECCCCCEEEEEEEECCHHCCCCE VVIPFGGEIEGELRPVSNGTQFFAEQLIIGDRRRFPINAVSQVITETEEITKGASAGDIL EEEEECCCCCCEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHH KGAAVGGGAAALLSAVLGDRVLATERILIGAGLGALGGVLLGREEGEVVVIYPEDDLELR HCCCCCCHHHHHHHHHHCCHHHHHCEEEEECCHHHHHHEEEECCCCCEEEEECCCCCEEE LRSDFALR ECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA