Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113476119

Identifier: 113476119

GI number: 113476119

Start: 3859190

End: 3859936

Strand: Reverse

Name: 113476119

Synonym: Tery_2500

Alternate gene names: NA

Gene position: 3859936-3859190 (Counterclockwise)

Preceding gene: 113476120

Following gene: 113476118

Centisome position: 49.8

GC content: 43.37

Gene sequence:

>747_bases
ATGGTTAATTCAAAAAACTGGCATTCTGGAACGTCTTTGTTGTTGACTTTAGGCATGACATTAGCTACAGCAACTCCTGG
TTTAATGTCAAAACAAGCTATGGCTCAATTTAACGGACCAAGACAATACCCAGGCTACCAACAAAGACAATACCCAGGCT
ACCAACAAAGACGATATCCAGGCTACCAACACAGACGATATCCAGGTAACCCAAGAGGGCCGTTGTCTGTAGCAAGGATA
CGAGCAGGAAAGCTTATTCCTATAGAATATAAGGAAGCAGAAAAGGTTGTGATAACTCCAGATGAGTCGATGAGGTTAAG
GTTGAGGGTGACTAAAGATATTAGGGATGCTCAAGGAAGAGTGGTTATACCTTTTGGTGGTGAGATAGAAGGTGAACTAC
GACCTGTTTCAAATGGGACTCAGTTTTTTGCTGAACAATTAATTATTGGCGATCGCCGTAGGTTTCCTATTAATGCTGTT
TCTCAAGTAATTACTGAGACTGAAGAAATAACAAAAGGTGCAAGCGCTGGGGATATCTTGAAGGGTGCTGCTGTGGGTGG
TGGTGCTGCTGCTTTATTATCTGCGGTTCTTGGAGATCGGGTTCTGGCTACGGAAAGGATATTAATAGGTGCGGGTTTAG
GTGCTTTAGGTGGAGTGTTATTGGGTCGGGAAGAAGGGGAGGTAGTTGTTATTTATCCAGAGGATGATTTAGAATTGAGG
TTGCGTTCTGATTTTGCGTTGCGCTAG

Upstream 100 bases:

>100_bases
CAAAAGGAAATAAAAATTTAGATGCACGAGAGCTTAACTGATAACTAATGACCTTAGGCGTCTGTACTGATAACTGAATA
TTGGAGGATAGATATTACTT

Downstream 100 bases:

>100_bases
TTTTGGGTTCAGAAGTTAGCTGTGAAATGAATTCTTGTAAGAATTGCTGCCTTGAGCGTATATATTGCTTGGGTTATGGG
AGTGGATATCGCGTCTCAAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MVNSKNWHSGTSLLLTLGMTLATATPGLMSKQAMAQFNGPRQYPGYQQRQYPGYQQRRYPGYQHRRYPGNPRGPLSVARI
RAGKLIPIEYKEAEKVVITPDESMRLRLRVTKDIRDAQGRVVIPFGGEIEGELRPVSNGTQFFAEQLIIGDRRRFPINAV
SQVITETEEITKGASAGDILKGAAVGGGAAALLSAVLGDRVLATERILIGAGLGALGGVLLGREEGEVVVIYPEDDLELR
LRSDFALR

Sequences:

>Translated_248_residues
MVNSKNWHSGTSLLLTLGMTLATATPGLMSKQAMAQFNGPRQYPGYQQRQYPGYQQRRYPGYQHRRYPGNPRGPLSVARI
RAGKLIPIEYKEAEKVVITPDESMRLRLRVTKDIRDAQGRVVIPFGGEIEGELRPVSNGTQFFAEQLIIGDRRRFPINAV
SQVITETEEITKGASAGDILKGAAVGGGAAALLSAVLGDRVLATERILIGAGLGALGGVLLGREEGEVVVIYPEDDLELR
LRSDFALR
>Mature_248_residues
MVNSKNWHSGTSLLLTLGMTLATATPGLMSKQAMAQFNGPRQYPGYQQRQYPGYQQRRYPGYQHRRYPGNPRGPLSVARI
RAGKLIPIEYKEAEKVVITPDESMRLRLRVTKDIRDAQGRVVIPFGGEIEGELRPVSNGTQFFAEQLIIGDRRRFPINAV
SQVITETEEITKGASAGDILKGAAVGGGAAALLSAVLGDRVLATERILIGAGLGALGGVLLGREEGEVVVIYPEDDLELR
LRSDFALR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27086; Mature: 27086

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNSKNWHSGTSLLLTLGMTLATATPGLMSKQAMAQFNGPRQYPGYQQRQYPGYQQRRYP
CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHCCC
GYQHRRYPGNPRGPLSVARIRAGKLIPIEYKEAEKVVITPDESMRLRLRVTKDIRDAQGR
CCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCEEEECCCCCEEEEEEEECCHHCCCCE
VVIPFGGEIEGELRPVSNGTQFFAEQLIIGDRRRFPINAVSQVITETEEITKGASAGDIL
EEEEECCCCCCEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHH
KGAAVGGGAAALLSAVLGDRVLATERILIGAGLGALGGVLLGREEGEVVVIYPEDDLELR
HCCCCCCHHHHHHHHHHCCHHHHHCEEEEECCHHHHHHEEEECCCCCEEEEECCCCCEEE
LRSDFALR
ECCCCCCC
>Mature Secondary Structure
MVNSKNWHSGTSLLLTLGMTLATATPGLMSKQAMAQFNGPRQYPGYQQRQYPGYQQRRYP
CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHCCC
GYQHRRYPGNPRGPLSVARIRAGKLIPIEYKEAEKVVITPDESMRLRLRVTKDIRDAQGR
CCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCEEEECCCCCEEEEEEEECCHHCCCCE
VVIPFGGEIEGELRPVSNGTQFFAEQLIIGDRRRFPINAVSQVITETEEITKGASAGDIL
EEEEECCCCCCEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHH
KGAAVGGGAAALLSAVLGDRVLATERILIGAGLGALGGVLLGREEGEVVVIYPEDDLELR
HCCCCCCHHHHHHHHHHCCHHHHHCEEEEECCHHHHHHEEEECCCCCEEEEECCCCCEEE
LRSDFALR
ECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA