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The map label for this gene is ykfC [H]

Identifier: 113476066

GI number: 113476066

Start: 3759539

End: 3760330

Strand: Reverse

Name: ykfC [H]

Synonym: Tery_2439

Alternate gene names: 113476066

Gene position: 3760330-3759539 (Counterclockwise)

Preceding gene: 113476067

Following gene: 113476065

Centisome position: 48.52

GC content: 39.39

Gene sequence:

>792_bases
ATGAACAAAGCTAAAACCCTAAAAAGAAACTTAGAAAATCCTGAGCCATTTTTAAGCGTAGCATGGGATACAAACGATAT
ACCAGACCTATGTAGTGTCAATCCTAACCTTAAATGGAAAGACATTAACTGGAAAAAGGTAGAAAAATATGTATTTAAGT
TGCAAAAGTTAATTTACAGAGCATCCAGCCGTGGCGAAATCCGCAAAATGCGTAAGTATCAAAAACTTCTGACCAAAAGT
TATTATGCTAGGTTGCTAGCTGTTAGGCGTGTGACGCAAGACAACCAGGGAAAGAAAACAGCGGGTATAGACGGTATAAA
AAGTCTTCCCCCAATGCAAAGATTTAACTTGGTAGAAATGTTAAGGTCACGATATCTTAAAGCAAGCCCAACCCGTAGAG
TCTGGATACCAAAACCAGGTAGAGAAGAAAAACGTCCACTAGGCATACCTACCATGTATGATAGGGCCCTTCAAGCACTG
GTAAAGTTAGGTATGGAACCAGAATGGGAGGCACTTTTTGAGCCTAATAGCTATGGTTTTAGACCAGGTCGGTCAGCACA
TGATGCCATTGAAGCCATCTATAAAAGCATCAACAAAAAATCAAAATATGTTTTAGATGCTGACATATCCAAATGTTTTG
ACCAAATTAACCATGGTGCACTGTTGAGAAAAATAGGAAAATCTCCATACAGACGATTAATCAAACAATGGTTAAAATCT
GGAGTGTGTGACAACAAACAATTCTCAAACACTGTGGAAGGTACGCCACAGGGAGGGGTTATCTCACCCTGA

Upstream 100 bases:

>100_bases
ACACAGAAGTTGTAGGTTTTAAGGAGAGTAGGATTGAGTAAGAAGCATTGCAGATGCAGACGTACTCACTGTTAGACGTA
ATGTAAAGTAATGACTAGCT

Downstream 100 bases:

>100_bases
AAGAGCAAACATCGCCCTACACGGTATGGAAAAATGTTTAGAAGAATTTGCCAAAACCCTTCCAGGGAGAAAGCATGACA
ACATACAGGCATTATCCTTA

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MNKAKTLKRNLENPEPFLSVAWDTNDIPDLCSVNPNLKWKDINWKKVEKYVFKLQKLIYRASSRGEIRKMRKYQKLLTKS
YYARLLAVRRVTQDNQGKKTAGIDGIKSLPPMQRFNLVEMLRSRYLKASPTRRVWIPKPGREEKRPLGIPTMYDRALQAL
VKLGMEPEWEALFEPNSYGFRPGRSAHDAIEAIYKSINKKSKYVLDADISKCFDQINHGALLRKIGKSPYRRLIKQWLKS
GVCDNKQFSNTVEGTPQGGVISP

Sequences:

>Translated_263_residues
MNKAKTLKRNLENPEPFLSVAWDTNDIPDLCSVNPNLKWKDINWKKVEKYVFKLQKLIYRASSRGEIRKMRKYQKLLTKS
YYARLLAVRRVTQDNQGKKTAGIDGIKSLPPMQRFNLVEMLRSRYLKASPTRRVWIPKPGREEKRPLGIPTMYDRALQAL
VKLGMEPEWEALFEPNSYGFRPGRSAHDAIEAIYKSINKKSKYVLDADISKCFDQINHGALLRKIGKSPYRRLIKQWLKS
GVCDNKQFSNTVEGTPQGGVISP
>Mature_263_residues
MNKAKTLKRNLENPEPFLSVAWDTNDIPDLCSVNPNLKWKDINWKKVEKYVFKLQKLIYRASSRGEIRKMRKYQKLLTKS
YYARLLAVRRVTQDNQGKKTAGIDGIKSLPPMQRFNLVEMLRSRYLKASPTRRVWIPKPGREEKRPLGIPTMYDRALQAL
VKLGMEPEWEALFEPNSYGFRPGRSAHDAIEAIYKSINKKSKYVLDADISKCFDQINHGALLRKIGKSPYRRLIKQWLKS
GVCDNKQFSNTVEGTPQGGVISP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=173, Percent_Identity=30.0578034682081, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6226520, Length=186, Percent_Identity=27.4193548387097, Blast_Score=70, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 30415; Mature: 30415

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKAKTLKRNLENPEPFLSVAWDTNDIPDLCSVNPNLKWKDINWKKVEKYVFKLQKLIYR
CCHHHHHHHHCCCCCCCEEEEECCCCCCHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHH
ASSRGEIRKMRKYQKLLTKSYYARLLAVRRVTQDNQGKKTAGIDGIKSLPPMQRFNLVEM
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHHHH
LRSRYLKASPTRRVWIPKPGREEKRPLGIPTMYDRALQALVKLGMEPEWEALFEPNSYGF
HHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCC
RPGRSAHDAIEAIYKSINKKSKYVLDADISKCFDQINHGALLRKIGKSPYRRLIKQWLKS
CCCCCHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
GVCDNKQFSNTVEGTPQGGVISP
CCCCCHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNKAKTLKRNLENPEPFLSVAWDTNDIPDLCSVNPNLKWKDINWKKVEKYVFKLQKLIYR
CCHHHHHHHHCCCCCCCEEEEECCCCCCHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHH
ASSRGEIRKMRKYQKLLTKSYYARLLAVRRVTQDNQGKKTAGIDGIKSLPPMQRFNLVEM
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHHHH
LRSRYLKASPTRRVWIPKPGREEKRPLGIPTMYDRALQALVKLGMEPEWEALFEPNSYGF
HHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCC
RPGRSAHDAIEAIYKSINKKSKYVLDADISKCFDQINHGALLRKIGKSPYRRLIKQWLKS
CCCCCHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
GVCDNKQFSNTVEGTPQGGVISP
CCCCCHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]