Click here to switch to the map view.

The map label for this gene is 113476065

Identifier: 113476065

GI number: 113476065

Start: 3758497

End: 3759513

Strand: Reverse

Name: 113476065

Synonym: Tery_2438

Alternate gene names: NA

Gene position: 3759513-3758497 (Counterclockwise)

Preceding gene: 113476066

Following gene: 113476062

Centisome position: 48.51

GC content: 38.45

Gene sequence:

>1017_bases
ATGGAAAAATGTTTAGAAGAATTTGCCAAAACCCTTCCAGGGAGAAAGCATGACAACATACAGGCATTATCCTTAATAAG
ATACGCAGATGATTTTGTAATCCTACACAAAGACATCAAAGTATTAATACAAGCAAAAACCTTAATACAGGAATGGTTAA
ACCAGGTAGGATTAGAGCTAAAACCAGAAAAGACTAAAATTGCCCACACCCTGGAAGAATATGAAGGAAACAAACCCGGA
TTTAATTTTTTAGGATTTACAATAAGGCAATGGAAAGTCAAGACAACCAAACAAGGATTTAAGACACTGATTAAGCCATC
ATCTAAGAGTATTAAAACTCATTATCGGAAGTTGGCGGATATATGTGATTGCCACAAAACCGCCCCTACGAAAGCTTTAA
TAGCTAAACTAAATCCGATAATCAGGGGATGGGCCAACTACTTCTCCACTGTAGTCAGTAAAGAGGTATACAGCAAATTA
GACTGCCTCCTGTGGAAAAGGATATGGAGATGGGGAAGTAGACGGCATCCAAACAAGTCAGCCAAATGGGTAAAACAAAA
GTATTTCCCTCGCTGCAAAGAGACCAGAAACTGGTTACTTAATGACGGCGAATACGTACTTAACCTACACGCAGACGTAG
CTATAAAAAGACACGTCAAGGTAAAGGGCAATAAATCCCCTTATGACGGCGATTGGACTTATTGGAGCAGTAGAATCGGT
AAACACCCAGGCATAAGGAAAGAAGTAACAACGCTGTTAAAACGGCAAAAGAATAAATGCGCATTTTGTGGATTAACCTT
CAGATCAAACGACCTTATGGAAATTGACCATATAAAACCAAGGTCTGAAGGTGGTGACAACACAGTTAAAAATAAACAAC
TGCTACACCGACACTGCCACGATACTAAAACTGCTTTAGATAATAAAACATACACAAAACCTAAGTTACAGGACTTACCT
GATGAATACCTATGGGTAAATGATATGTTGATTCTAAAAACAGGGATGTACCTATGA

Upstream 100 bases:

>100_bases
TCTGGAGTGTGTGACAACAAACAATTCTCAAACACTGTGGAAGGTACGCCACAGGGAGGGGTTATCTCACCCTGAAAGAG
CAAACATCGCCCTACACGGT

Downstream 100 bases:

>100_bases
AAAAAAGGACGTTTAAGAGAGGAGCCGGATGAGGTGAAAGCCTCACGTCCGGTTCTGAAGACGAGTCGGGTAGGGTAACT
TACCTGGCTTAGTTTAACTC

Product: hypothetical protein

Products: NA

Alternate protein names: Reverse Transcriptase; Group II Intron Maturase-Specific Domain Family; Group II Intron Maturase-Specific; Reverse Transcriptase/Endonuclease Protein; Group II Intron Encoded Reverse Transcriptase; Retron-Type Reverse Transcriptase; Reverse Transcriptase-Like; Group II Intron-Encoding Maturase; Reverse Transcriptase-Like Protein; HNH Endonuclease Family Protein; Reverse Transcriptase/Maturase-Like Protein; Maturase; Group II Intron/Maturase; Reverse Transcriptase Interruption-C; Group II Intron Reverse Transcriptase/Maturase

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MEKCLEEFAKTLPGRKHDNIQALSLIRYADDFVILHKDIKVLIQAKTLIQEWLNQVGLELKPEKTKIAHTLEEYEGNKPG
FNFLGFTIRQWKVKTTKQGFKTLIKPSSKSIKTHYRKLADICDCHKTAPTKALIAKLNPIIRGWANYFSTVVSKEVYSKL
DCLLWKRIWRWGSRRHPNKSAKWVKQKYFPRCKETRNWLLNDGEYVLNLHADVAIKRHVKVKGNKSPYDGDWTYWSSRIG
KHPGIRKEVTTLLKRQKNKCAFCGLTFRSNDLMEIDHIKPRSEGGDNTVKNKQLLHRHCHDTKTALDNKTYTKPKLQDLP
DEYLWVNDMLILKTGMYL

Sequences:

>Translated_338_residues
MEKCLEEFAKTLPGRKHDNIQALSLIRYADDFVILHKDIKVLIQAKTLIQEWLNQVGLELKPEKTKIAHTLEEYEGNKPG
FNFLGFTIRQWKVKTTKQGFKTLIKPSSKSIKTHYRKLADICDCHKTAPTKALIAKLNPIIRGWANYFSTVVSKEVYSKL
DCLLWKRIWRWGSRRHPNKSAKWVKQKYFPRCKETRNWLLNDGEYVLNLHADVAIKRHVKVKGNKSPYDGDWTYWSSRIG
KHPGIRKEVTTLLKRQKNKCAFCGLTFRSNDLMEIDHIKPRSEGGDNTVKNKQLLHRHCHDTKTALDNKTYTKPKLQDLP
DEYLWVNDMLILKTGMYL
>Mature_338_residues
MEKCLEEFAKTLPGRKHDNIQALSLIRYADDFVILHKDIKVLIQAKTLIQEWLNQVGLELKPEKTKIAHTLEEYEGNKPG
FNFLGFTIRQWKVKTTKQGFKTLIKPSSKSIKTHYRKLADICDCHKTAPTKALIAKLNPIIRGWANYFSTVVSKEVYSKL
DCLLWKRIWRWGSRRHPNKSAKWVKQKYFPRCKETRNWLLNDGEYVLNLHADVAIKRHVKVKGNKSPYDGDWTYWSSRIG
KHPGIRKEVTTLLKRQKNKCAFCGLTFRSNDLMEIDHIKPRSEGGDNTVKNKQLLHRHCHDTKTALDNKTYTKPKLQDLP
DEYLWVNDMLILKTGMYL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39591; Mature: 39591

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKCLEEFAKTLPGRKHDNIQALSLIRYADDFVILHKDIKVLIQAKTLIQEWLNQVGLEL
CHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEE
KPEKTKIAHTLEEYEGNKPGFNFLGFTIRQWKVKTTKQGFKTLIKPSSKSIKTHYRKLAD
CCCHHHHHHHHHHHCCCCCCCCHHHHEEHHEEEHHHHHHHHHHHCCCCHHHHHHHHHHHH
ICDCHKTAPTKALIAKLNPIIRGWANYFSTVVSKEVYSKLDCLLWKRIWRWGSRRHPNKS
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
AKWVKQKYFPRCKETRNWLLNDGEYVLNLHADVAIKRHVKVKGNKSPYDGDWTYWSSRIG
HHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHHHHC
KHPGIRKEVTTLLKRQKNKCAFCGLTFRSNDLMEIDHIKPRSEGGDNTVKNKQLLHRHCH
CCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHH
DTKTALDNKTYTKPKLQDLPDEYLWVNDMLILKTGMYL
HHHHHHCCCCCCCCHHHHCCHHHEECCCCCEECCCCCC
>Mature Secondary Structure
MEKCLEEFAKTLPGRKHDNIQALSLIRYADDFVILHKDIKVLIQAKTLIQEWLNQVGLEL
CHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHCCCEE
KPEKTKIAHTLEEYEGNKPGFNFLGFTIRQWKVKTTKQGFKTLIKPSSKSIKTHYRKLAD
CCCHHHHHHHHHHHCCCCCCCCHHHHEEHHEEEHHHHHHHHHHHCCCCHHHHHHHHHHHH
ICDCHKTAPTKALIAKLNPIIRGWANYFSTVVSKEVYSKLDCLLWKRIWRWGSRRHPNKS
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
AKWVKQKYFPRCKETRNWLLNDGEYVLNLHADVAIKRHVKVKGNKSPYDGDWTYWSSRIG
HHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHHHHC
KHPGIRKEVTTLLKRQKNKCAFCGLTFRSNDLMEIDHIKPRSEGGDNTVKNKQLLHRHCH
CCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHH
DTKTALDNKTYTKPKLQDLPDEYLWVNDMLILKTGMYL
HHHHHHCCCCCCCCHHHHCCHHHEECCCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA