Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113476035

Identifier: 113476035

GI number: 113476035

Start: 3712586

End: 3713398

Strand: Reverse

Name: 113476035

Synonym: Tery_2405

Alternate gene names: NA

Gene position: 3713398-3712586 (Counterclockwise)

Preceding gene: 113476037

Following gene: 113476034

Centisome position: 47.91

GC content: 38.01

Gene sequence:

>813_bases
ATGATCAAAACCAAAGCCAAAACCCTAAATTGGCTAGGTTCATTAGTAAATCTAGCAATTTCTATCATAGCTTTAACAGG
TACGATCAGCTTGCAAGTACTCTGGCCACCAGAAGGTTCACCCTTAAAAGAAAAAATTATTTTAGACTCAACAGATGCAG
CCTTAGCCGAACAAAAAGAAGCTTTGCAGTTTCAGCTTAAGCTATTGAAAACATCTCCCACTTTTGGGTTTGATAATTTA
ATTGCAGATTGGGCATTCCTCCAGTTCATCCAATATTTCGGGGATGAGGTAGCCAGAAATCAAACAGGTTATTCCTTAAG
CGAAGATTATTTTGATATCATCACCCATTTAGATCCCAAATGGGTTGATATATACCTATTCCTTTCCAACTCTTTATCTA
TATATCAAGGTAAACCCAAAGTAGCTGTAGAATATATGACCCGTGGCACCGATGCACTTTCCCCACAAATAGATCCGGAA
GCTTGGCAAGTATGGAGATTAAAAGGGATCGATCAATTATTATTAGTAGGTGATATTCCAGGGGCAATTCGTTCTCACGA
AATGGCAGCAAAATGGACTGAGAATACATCATACCAAGAATTAAGCTCTCTGTTTAAAAACACAGCAGAATTTCTCAAGA
CAGATCCAGATAGTAAATTAATCAAGTTCAACGCCTGGTTATGGGTATATTATCAAACACAAGACTCAAGGGTAAAAGAG
CGCGCTCAACAAGAAATTATCGAACTTGGTGGGAAAGTGGAAATGAGTGAAAATGGAGAAAAGCTTTTTCTCTTGCCAGA
ATCTTCAGATTAG

Upstream 100 bases:

>100_bases
CAAATATTTAGACGTATGATATTTGTCAGGGTATAAAATTTACCTAATTTTGGGCTCAAAAATTTTAATAATTAATTTTA
TTAACAGGAAAATTTGAGAA

Downstream 100 bases:

>100_bases
AGGAAAATATTAAAATCAGATCTGGTAGCTTAATTTTAAGTAAGCCCCAAAGAACTTAACCTGCTTGACATGATAGAATT
TCAAATATAGTCATTTCAGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MIKTKAKTLNWLGSLVNLAISIIALTGTISLQVLWPPEGSPLKEKIILDSTDAALAEQKEALQFQLKLLKTSPTFGFDNL
IADWAFLQFIQYFGDEVARNQTGYSLSEDYFDIITHLDPKWVDIYLFLSNSLSIYQGKPKVAVEYMTRGTDALSPQIDPE
AWQVWRLKGIDQLLLVGDIPGAIRSHEMAAKWTENTSYQELSSLFKNTAEFLKTDPDSKLIKFNAWLWVYYQTQDSRVKE
RAQQEIIELGGKVEMSENGEKLFLLPESSD

Sequences:

>Translated_270_residues
MIKTKAKTLNWLGSLVNLAISIIALTGTISLQVLWPPEGSPLKEKIILDSTDAALAEQKEALQFQLKLLKTSPTFGFDNL
IADWAFLQFIQYFGDEVARNQTGYSLSEDYFDIITHLDPKWVDIYLFLSNSLSIYQGKPKVAVEYMTRGTDALSPQIDPE
AWQVWRLKGIDQLLLVGDIPGAIRSHEMAAKWTENTSYQELSSLFKNTAEFLKTDPDSKLIKFNAWLWVYYQTQDSRVKE
RAQQEIIELGGKVEMSENGEKLFLLPESSD
>Mature_270_residues
MIKTKAKTLNWLGSLVNLAISIIALTGTISLQVLWPPEGSPLKEKIILDSTDAALAEQKEALQFQLKLLKTSPTFGFDNL
IADWAFLQFIQYFGDEVARNQTGYSLSEDYFDIITHLDPKWVDIYLFLSNSLSIYQGKPKVAVEYMTRGTDALSPQIDPE
AWQVWRLKGIDQLLLVGDIPGAIRSHEMAAKWTENTSYQELSSLFKNTAEFLKTDPDSKLIKFNAWLWVYYQTQDSRVKE
RAQQEIIELGGKVEMSENGEKLFLLPESSD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30693; Mature: 30693

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKTKAKTLNWLGSLVNLAISIIALTGTISLQVLWPPEGSPLKEKIILDSTDAALAEQKE
CCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCCCEEEECCCCHHHHHHHH
ALQFQLKLLKTSPTFGFDNLIADWAFLQFIQYFGDEVARNQTGYSLSEDYFDIITHLDPK
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCC
WVDIYLFLSNSLSIYQGKPKVAVEYMTRGTDALSPQIDPEAWQVWRLKGIDQLLLVGDIP
CEEEEEEEECCEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCC
GAIRSHEMAAKWTENTSYQELSSLFKNTAEFLKTDPDSKLIKFNAWLWVYYQTQDSRVKE
CHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCHHHHHH
RAQQEIIELGGKVEMSENGEKLFLLPESSD
HHHHHHHHCCCEEEECCCCCEEEEEECCCC
>Mature Secondary Structure
MIKTKAKTLNWLGSLVNLAISIIALTGTISLQVLWPPEGSPLKEKIILDSTDAALAEQKE
CCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCCCEEEECCCCHHHHHHHH
ALQFQLKLLKTSPTFGFDNLIADWAFLQFIQYFGDEVARNQTGYSLSEDYFDIITHLDPK
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCC
WVDIYLFLSNSLSIYQGKPKVAVEYMTRGTDALSPQIDPEAWQVWRLKGIDQLLLVGDIP
CEEEEEEEECCEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCC
GAIRSHEMAAKWTENTSYQELSSLFKNTAEFLKTDPDSKLIKFNAWLWVYYQTQDSRVKE
CHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCHHHHHH
RAQQEIIELGGKVEMSENGEKLFLLPESSD
HHHHHHHHCCCEEEECCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA