Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113476002
Identifier: 113476002
GI number: 113476002
Start: 3659861
End: 3660556
Strand: Reverse
Name: 113476002
Synonym: Tery_2370
Alternate gene names: NA
Gene position: 3660556-3659861 (Counterclockwise)
Preceding gene: 113476013
Following gene: 113476001
Centisome position: 47.23
GC content: 32.76
Gene sequence:
>696_bases TTGCAAGCAAGAGAAATCGAGCCTAAGCTAAAACAACTTAGCCGTCTTGCCTGGTCAACCGAACCTGCTTTAGCCCAGAG GTTAGATGAAGTCAGGCGTTGGATTAAAGATATAAGACCAGGCTCACTAACTCAAAAGAGGCTTTTAGTAGGGTTTTTAT TAGAATTAATTAAGGATGGAGAATTTTGGTTAAAATTACAATCTTTAACAAATGAAGAAAGACAAATATTTTTGCAGCAC CTTCCATCTCCAATTACATACTGGTATGAAAGTCTTTTTCCAAAATGGTTTAATAAAAATGACCATAAATTCTATATATG GAAACAAAAGTTAAGATCAGGAGAGTTTAATCAAAAAGATGCTCAATTAATAGAGTCTATCGCCCGTCAAATTAAAAGTC GTGATGGTTTTGTTGTACATCGTTATATTGCAGATTTGTCGATGGCAACAGATGTAATTGTAAGTAGTAACACAGGTAAA CCTCTTTGTGTACAACTCACTACTATATCAGGTGAATTTTGTAATTATAAATATAAAGAATGGAAAGATACATTGCAACA ATGGAAAATTAGACGGGGTATTTTTGTTAGTTATAACCCAAGTCAAGATAGATCTGTTATTCAATTAGTAAATCTCATTC TGCATAACAGCAAACATTTAAAGGAGGCTAAATACATTAAGTTTTGTTTTAGATAG
Upstream 100 bases:
>100_bases TTTGTTAATATCCTTAACATTAAGAATCAACCGCTACAATATAAGTTATAATATAAGAGTTTTTAAAGATTCTTATAATG GGTCTGATGTAGGAGGGTGA
Downstream 100 bases:
>100_bases GAATTGATCTATTCCTATTGAGTTTTGCTTCATTTTGGAAAATAAAACTATACATTTTAACAGTAGGCAGGATATATGGT AACAACTGGCACAACTCTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 231; Mature: 231
Protein sequence:
>231_residues MQAREIEPKLKQLSRLAWSTEPALAQRLDEVRRWIKDIRPGSLTQKRLLVGFLLELIKDGEFWLKLQSLTNEERQIFLQH LPSPITYWYESLFPKWFNKNDHKFYIWKQKLRSGEFNQKDAQLIESIARQIKSRDGFVVHRYIADLSMATDVIVSSNTGK PLCVQLTTISGEFCNYKYKEWKDTLQQWKIRRGIFVSYNPSQDRSVIQLVNLILHNSKHLKEAKYIKFCFR
Sequences:
>Translated_231_residues MQAREIEPKLKQLSRLAWSTEPALAQRLDEVRRWIKDIRPGSLTQKRLLVGFLLELIKDGEFWLKLQSLTNEERQIFLQH LPSPITYWYESLFPKWFNKNDHKFYIWKQKLRSGEFNQKDAQLIESIARQIKSRDGFVVHRYIADLSMATDVIVSSNTGK PLCVQLTTISGEFCNYKYKEWKDTLQQWKIRRGIFVSYNPSQDRSVIQLVNLILHNSKHLKEAKYIKFCFR >Mature_231_residues MQAREIEPKLKQLSRLAWSTEPALAQRLDEVRRWIKDIRPGSLTQKRLLVGFLLELIKDGEFWLKLQSLTNEERQIFLQH LPSPITYWYESLFPKWFNKNDHKFYIWKQKLRSGEFNQKDAQLIESIARQIKSRDGFVVHRYIADLSMATDVIVSSNTGK PLCVQLTTISGEFCNYKYKEWKDTLQQWKIRRGIFVSYNPSQDRSVIQLVNLILHNSKHLKEAKYIKFCFR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27538; Mature: 27538
Theoretical pI: Translated: 10.28; Mature: 10.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQAREIEPKLKQLSRLAWSTEPALAQRLDEVRRWIKDIRPGSLTQKRLLVGFLLELIKDG CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC EFWLKLQSLTNEERQIFLQHLPSPITYWYESLFPKWFNKNDHKFYIWKQKLRSGEFNQKD HHEEEEHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCHHH AQLIESIARQIKSRDGFVVHRYIADLSMATDVIVSSNTGKPLCVQLTTISGEFCNYKYKE HHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHEEECCCCCEEEEEEEEECCHHHCCCHHH WKDTLQQWKIRRGIFVSYNPSQDRSVIQLVNLILHNSKHLKEAKYIKFCFR HHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCC >Mature Secondary Structure MQAREIEPKLKQLSRLAWSTEPALAQRLDEVRRWIKDIRPGSLTQKRLLVGFLLELIKDG CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC EFWLKLQSLTNEERQIFLQHLPSPITYWYESLFPKWFNKNDHKFYIWKQKLRSGEFNQKD HHEEEEHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCHHH AQLIESIARQIKSRDGFVVHRYIADLSMATDVIVSSNTGKPLCVQLTTISGEFCNYKYKE HHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHEEECCCCCEEEEEEEEECCHHHCCCHHH WKDTLQQWKIRRGIFVSYNPSQDRSVIQLVNLILHNSKHLKEAKYIKFCFR HHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA