Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113476002

Identifier: 113476002

GI number: 113476002

Start: 3659861

End: 3660556

Strand: Reverse

Name: 113476002

Synonym: Tery_2370

Alternate gene names: NA

Gene position: 3660556-3659861 (Counterclockwise)

Preceding gene: 113476013

Following gene: 113476001

Centisome position: 47.23

GC content: 32.76

Gene sequence:

>696_bases
TTGCAAGCAAGAGAAATCGAGCCTAAGCTAAAACAACTTAGCCGTCTTGCCTGGTCAACCGAACCTGCTTTAGCCCAGAG
GTTAGATGAAGTCAGGCGTTGGATTAAAGATATAAGACCAGGCTCACTAACTCAAAAGAGGCTTTTAGTAGGGTTTTTAT
TAGAATTAATTAAGGATGGAGAATTTTGGTTAAAATTACAATCTTTAACAAATGAAGAAAGACAAATATTTTTGCAGCAC
CTTCCATCTCCAATTACATACTGGTATGAAAGTCTTTTTCCAAAATGGTTTAATAAAAATGACCATAAATTCTATATATG
GAAACAAAAGTTAAGATCAGGAGAGTTTAATCAAAAAGATGCTCAATTAATAGAGTCTATCGCCCGTCAAATTAAAAGTC
GTGATGGTTTTGTTGTACATCGTTATATTGCAGATTTGTCGATGGCAACAGATGTAATTGTAAGTAGTAACACAGGTAAA
CCTCTTTGTGTACAACTCACTACTATATCAGGTGAATTTTGTAATTATAAATATAAAGAATGGAAAGATACATTGCAACA
ATGGAAAATTAGACGGGGTATTTTTGTTAGTTATAACCCAAGTCAAGATAGATCTGTTATTCAATTAGTAAATCTCATTC
TGCATAACAGCAAACATTTAAAGGAGGCTAAATACATTAAGTTTTGTTTTAGATAG

Upstream 100 bases:

>100_bases
TTTGTTAATATCCTTAACATTAAGAATCAACCGCTACAATATAAGTTATAATATAAGAGTTTTTAAAGATTCTTATAATG
GGTCTGATGTAGGAGGGTGA

Downstream 100 bases:

>100_bases
GAATTGATCTATTCCTATTGAGTTTTGCTTCATTTTGGAAAATAAAACTATACATTTTAACAGTAGGCAGGATATATGGT
AACAACTGGCACAACTCTAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MQAREIEPKLKQLSRLAWSTEPALAQRLDEVRRWIKDIRPGSLTQKRLLVGFLLELIKDGEFWLKLQSLTNEERQIFLQH
LPSPITYWYESLFPKWFNKNDHKFYIWKQKLRSGEFNQKDAQLIESIARQIKSRDGFVVHRYIADLSMATDVIVSSNTGK
PLCVQLTTISGEFCNYKYKEWKDTLQQWKIRRGIFVSYNPSQDRSVIQLVNLILHNSKHLKEAKYIKFCFR

Sequences:

>Translated_231_residues
MQAREIEPKLKQLSRLAWSTEPALAQRLDEVRRWIKDIRPGSLTQKRLLVGFLLELIKDGEFWLKLQSLTNEERQIFLQH
LPSPITYWYESLFPKWFNKNDHKFYIWKQKLRSGEFNQKDAQLIESIARQIKSRDGFVVHRYIADLSMATDVIVSSNTGK
PLCVQLTTISGEFCNYKYKEWKDTLQQWKIRRGIFVSYNPSQDRSVIQLVNLILHNSKHLKEAKYIKFCFR
>Mature_231_residues
MQAREIEPKLKQLSRLAWSTEPALAQRLDEVRRWIKDIRPGSLTQKRLLVGFLLELIKDGEFWLKLQSLTNEERQIFLQH
LPSPITYWYESLFPKWFNKNDHKFYIWKQKLRSGEFNQKDAQLIESIARQIKSRDGFVVHRYIADLSMATDVIVSSNTGK
PLCVQLTTISGEFCNYKYKEWKDTLQQWKIRRGIFVSYNPSQDRSVIQLVNLILHNSKHLKEAKYIKFCFR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27538; Mature: 27538

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAREIEPKLKQLSRLAWSTEPALAQRLDEVRRWIKDIRPGSLTQKRLLVGFLLELIKDG
CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
EFWLKLQSLTNEERQIFLQHLPSPITYWYESLFPKWFNKNDHKFYIWKQKLRSGEFNQKD
HHEEEEHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCHHH
AQLIESIARQIKSRDGFVVHRYIADLSMATDVIVSSNTGKPLCVQLTTISGEFCNYKYKE
HHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHEEECCCCCEEEEEEEEECCHHHCCCHHH
WKDTLQQWKIRRGIFVSYNPSQDRSVIQLVNLILHNSKHLKEAKYIKFCFR
HHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MQAREIEPKLKQLSRLAWSTEPALAQRLDEVRRWIKDIRPGSLTQKRLLVGFLLELIKDG
CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
EFWLKLQSLTNEERQIFLQHLPSPITYWYESLFPKWFNKNDHKFYIWKQKLRSGEFNQKD
HHEEEEHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCHHH
AQLIESIARQIKSRDGFVVHRYIADLSMATDVIVSSNTGKPLCVQLTTISGEFCNYKYKE
HHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHEEECCCCCEEEEEEEEECCHHHCCCHHH
WKDTLQQWKIRRGIFVSYNPSQDRSVIQLVNLILHNSKHLKEAKYIKFCFR
HHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA