Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113476013
Identifier: 113476013
GI number: 113476013
Start: 3679358
End: 3679600
Strand: Reverse
Name: 113476013
Synonym: Tery_2381
Alternate gene names: NA
Gene position: 3679600-3679358 (Counterclockwise)
Preceding gene: 113476015
Following gene: 113476002
Centisome position: 47.48
GC content: 34.57
Gene sequence:
>243_bases ATGTCTGAAACTTTAAAAGCTAATACTTCAGTACCAACAACCCAAGAAAAAGAAATAGAAGAAGTCATCAAAGGACTAGA ACAATATCGGGAACGTATTATTAATGAAACCCTAGAACAAGCCAAAAAAGTAAAAATTCCTAAGGCTAAAGCAATGGCCA ATTTGGAACAACATCCAGAATTGTCCAAAATTGATCAAGCTCTTAATGAATTGCGTTCTGCCACACAACATCAAATGCGA TAA
Upstream 100 bases:
>100_bases TGGGAATTTTGTTTACCTTTCTTTACATATACTAGCAACTAATCCCTAAATCTAGGATGATAAATTGTAGAAAAATACCA AAATTAATGAGAAAATTATT
Downstream 100 bases:
>100_bases CCTACAGCTTAATATTCAAGAACTCTCTGCTGAAGTTCTATATCTTTAAAGTTCAAAACTGTGGTGAGGGAAACCCTGGC TAAAGAATCTTGTATTAATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 80; Mature: 79
Protein sequence:
>80_residues MSETLKANTSVPTTQEKEIEEVIKGLEQYRERIINETLEQAKKVKIPKAKAMANLEQHPELSKIDQALNELRSATQHQMR
Sequences:
>Translated_80_residues MSETLKANTSVPTTQEKEIEEVIKGLEQYRERIINETLEQAKKVKIPKAKAMANLEQHPELSKIDQALNELRSATQHQMR >Mature_79_residues SETLKANTSVPTTQEKEIEEVIKGLEQYRERIINETLEQAKKVKIPKAKAMANLEQHPELSKIDQALNELRSATQHQMR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9215; Mature: 9083
Theoretical pI: Translated: 7.70; Mature: 7.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSETLKANTSVPTTQEKEIEEVIKGLEQYRERIINETLEQAKKVKIPKAKAMANLEQHPE CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC LSKIDQALNELRSATQHQMR HHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SETLKANTSVPTTQEKEIEEVIKGLEQYRERIINETLEQAKKVKIPKAKAMANLEQHPE CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC LSKIDQALNELRSATQHQMR HHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA