Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475919

Identifier: 113475919

GI number: 113475919

Start: 3549171

End: 3551342

Strand: Reverse

Name: 113475919

Synonym: Tery_2281

Alternate gene names: NA

Gene position: 3551342-3549171 (Counterclockwise)

Preceding gene: 113475920

Following gene: 113475918

Centisome position: 45.82

GC content: 37.15

Gene sequence:

>2172_bases
ATGTATTCATTGCTTGCTGCTCAGGATAAAGCATATATGAATGAAAAGCACAAAACTATAGGCCAAGGCCGGATACTATC
ACAGATGAAGCCAAGAGACGAAACTCAATGGCAATTGTCTGAACCTCGGAAAAACCGGCAAGAAAGGCTGCAGGAAATTA
GAGCAAATGGTAGTCAGATCAAGACTTACAAATCTCCTGCAAAATACTCCAATCAACAAAAAAAATCAGTTTCCCAAATC
AAAAAAACTGAGTCAAAAAAAGGGAAATCTACAAACAATCTAGGGTCTATCTATGGGCCTTTATTGATACTACTACTGGT
GATAGTTCCGACTGGAGCTAGCATAACAGCTATCTCAGCTTTATTGAAGTTACCCTATAATGAAGATTGTGAGTCAACTT
ACTGGCGTACTGCATCTGCTAGTAAACGTCTTTATTGTGCCCAGTTGTTAGCGACTTCTCCAACTCTTGATAGTTTGCTT
AAAGCAATTGATTTAGTAGATGTTTTATCCAATGAGCATCCAATGCGTCCACAAGTAGATAGTTATATTGAAATGTGGTC
AAAAAAAATATTGTCCTTGGGAGATTTAGCTTTTCAAGATGGAAAATTAGAAGAAGCTATTACCATTGCTGAAAGAGTCC
CCCAGAAAGTGCCAGCTTACTCACTGGTAGAACAACAGATTCAAGAGTGGCAAAAAACTTGGAATCAAGCGGAAGGAAAT
TACCAGCAGACTCAAGAATATTTGCGTGAAGAAGAATGGCATCAAGCTTCAATAGAAGCTTCTCGTTTATTATCAGTGCC
AAATGTTCACTGGGGAACAAAAAAATATCAGAAATTAATTAATGATATTAAAAAAACTCGTAAAGAGGGTGCTAAATTAG
AAGAAGTACGAGAACTTGGAGAAGCAGGTGGACTAAATAATCTGACTAATGGGATTAAACAAGCTCAAGAAATTGAAGAA
AATAGCTATCTCTATCAGAAAGCTAAAAAGTTAATAGTAAATTTGGGAAAAAAAGTAATAGATATAGCTTTAGTCAAATT
AAACGCAGGAAATTGGCAAGAGGCACTTGAAGATGTCAATAAGGTTCCCAAAAATGATGCCTTACTGGAATTAGTAGAAG
ATATAGAAGTTTTAGCTCGTGCCCATTCCCCAGCTAATTTATCTACAATAGCAGGATATAAAGATGCTATTGCTCAAGTA
AAAAGACTTAAGGCTGAACGACCTTTTTACAGCAAAGCTCAAGAGTTAATTAGTCTTTGGGAACAAGAAATAGCAGATGT
GACTATTATTGAAGAAGGAAAAAAACTAGCCTTACCTAGAGGAATTAGTGATTTTAAAGCAGCGATCGCTAAAGTTCAGA
CTATTTCTCCCTATAACCCTCGTGGAAAAGAAGCAACTACTTTGATAAAAGCTTGGAGTAAAGAACTACAGAGACAAGAG
GATCAGCCTTTTTTGGAGAAAGCCAAAAAATTAGCAAGCTTTGGTGATATGAGTTCTCTACAAGCAGCAATTTCTGAAGC
CAGTCAAATTGGTAGAGGTAGAACTCTATATCAGGAAGCTCAAAGTCAAATTAATAGGTGGACAGAACAAGTTGAACGTT
TTCAAGACCAACCAATTATTGCTCAAGCAGAACTTCTAGCGTCTTCAGGTAAGATAGAACAGGCAATTACCAAAGCTCAA
GAAATCAAATCAGGTAGAATCCTCTATAATCAAGCCAGAGCTAAAATTCAACAGTGGCAAGCTCAACAAGATACCAAAAT
TAAATTAGAAAGTGCTCGTCAAGTAGCGCAAACAGCAACAACAGATGCTTATGTTACAGCAATTGGTTTAGCACAACAAG
TACCAACTTCTAGTTCTAGGCAATTAGAAGCTTCTCAATTGATTAATCAATGGAGTCAACAAATATTGTTAATTGCTATG
GAGGTTGTGAAGCAAGATGTGCCACGAGCCATCTCAATTGCTAGGAAAATTCCGACGAGTACTCTAGCTTATAATTCAGC
TCAGAGTCAAATTAGTATTTGGCAAAGTTGGCTTAACCTTTCTGAGCCTGTAGAAGATCGGACTCTACCTTCAGACCCAT
ATCAGGAGTCGAGGGCAGAAAAATCAAGGATTTTAACGGATGAGAGAGATAAACCTTTGGTATCTACACCAAAATTTACT
GACAATAACTAA

Upstream 100 bases:

>100_bases
AGTGTATATCTAAGAACCGCATATAATTAAATTAATTTAATTTGAATTTAGATGAAAGCTTGTTTGTAGGCTAAATCAAC
CGGAAAGTAATGAGACGTTA

Downstream 100 bases:

>100_bases
AGTTCAGGATGGTAATGATTGGCCATTATGTGCTAAATGAGGATATATCTTATAAAATGGACAAAAAAAGAAGATATGCT
AAAAGTGCTAATTACTAATA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 723; Mature: 723

Protein sequence:

>723_residues
MYSLLAAQDKAYMNEKHKTIGQGRILSQMKPRDETQWQLSEPRKNRQERLQEIRANGSQIKTYKSPAKYSNQQKKSVSQI
KKTESKKGKSTNNLGSIYGPLLILLLVIVPTGASITAISALLKLPYNEDCESTYWRTASASKRLYCAQLLATSPTLDSLL
KAIDLVDVLSNEHPMRPQVDSYIEMWSKKILSLGDLAFQDGKLEEAITIAERVPQKVPAYSLVEQQIQEWQKTWNQAEGN
YQQTQEYLREEEWHQASIEASRLLSVPNVHWGTKKYQKLINDIKKTRKEGAKLEEVRELGEAGGLNNLTNGIKQAQEIEE
NSYLYQKAKKLIVNLGKKVIDIALVKLNAGNWQEALEDVNKVPKNDALLELVEDIEVLARAHSPANLSTIAGYKDAIAQV
KRLKAERPFYSKAQELISLWEQEIADVTIIEEGKKLALPRGISDFKAAIAKVQTISPYNPRGKEATTLIKAWSKELQRQE
DQPFLEKAKKLASFGDMSSLQAAISEASQIGRGRTLYQEAQSQINRWTEQVERFQDQPIIAQAELLASSGKIEQAITKAQ
EIKSGRILYNQARAKIQQWQAQQDTKIKLESARQVAQTATTDAYVTAIGLAQQVPTSSSRQLEASQLINQWSQQILLIAM
EVVKQDVPRAISIARKIPTSTLAYNSAQSQISIWQSWLNLSEPVEDRTLPSDPYQESRAEKSRILTDERDKPLVSTPKFT
DNN

Sequences:

>Translated_723_residues
MYSLLAAQDKAYMNEKHKTIGQGRILSQMKPRDETQWQLSEPRKNRQERLQEIRANGSQIKTYKSPAKYSNQQKKSVSQI
KKTESKKGKSTNNLGSIYGPLLILLLVIVPTGASITAISALLKLPYNEDCESTYWRTASASKRLYCAQLLATSPTLDSLL
KAIDLVDVLSNEHPMRPQVDSYIEMWSKKILSLGDLAFQDGKLEEAITIAERVPQKVPAYSLVEQQIQEWQKTWNQAEGN
YQQTQEYLREEEWHQASIEASRLLSVPNVHWGTKKYQKLINDIKKTRKEGAKLEEVRELGEAGGLNNLTNGIKQAQEIEE
NSYLYQKAKKLIVNLGKKVIDIALVKLNAGNWQEALEDVNKVPKNDALLELVEDIEVLARAHSPANLSTIAGYKDAIAQV
KRLKAERPFYSKAQELISLWEQEIADVTIIEEGKKLALPRGISDFKAAIAKVQTISPYNPRGKEATTLIKAWSKELQRQE
DQPFLEKAKKLASFGDMSSLQAAISEASQIGRGRTLYQEAQSQINRWTEQVERFQDQPIIAQAELLASSGKIEQAITKAQ
EIKSGRILYNQARAKIQQWQAQQDTKIKLESARQVAQTATTDAYVTAIGLAQQVPTSSSRQLEASQLINQWSQQILLIAM
EVVKQDVPRAISIARKIPTSTLAYNSAQSQISIWQSWLNLSEPVEDRTLPSDPYQESRAEKSRILTDERDKPLVSTPKFT
DNN
>Mature_723_residues
MYSLLAAQDKAYMNEKHKTIGQGRILSQMKPRDETQWQLSEPRKNRQERLQEIRANGSQIKTYKSPAKYSNQQKKSVSQI
KKTESKKGKSTNNLGSIYGPLLILLLVIVPTGASITAISALLKLPYNEDCESTYWRTASASKRLYCAQLLATSPTLDSLL
KAIDLVDVLSNEHPMRPQVDSYIEMWSKKILSLGDLAFQDGKLEEAITIAERVPQKVPAYSLVEQQIQEWQKTWNQAEGN
YQQTQEYLREEEWHQASIEASRLLSVPNVHWGTKKYQKLINDIKKTRKEGAKLEEVRELGEAGGLNNLTNGIKQAQEIEE
NSYLYQKAKKLIVNLGKKVIDIALVKLNAGNWQEALEDVNKVPKNDALLELVEDIEVLARAHSPANLSTIAGYKDAIAQV
KRLKAERPFYSKAQELISLWEQEIADVTIIEEGKKLALPRGISDFKAAIAKVQTISPYNPRGKEATTLIKAWSKELQRQE
DQPFLEKAKKLASFGDMSSLQAAISEASQIGRGRTLYQEAQSQINRWTEQVERFQDQPIIAQAELLASSGKIEQAITKAQ
EIKSGRILYNQARAKIQQWQAQQDTKIKLESARQVAQTATTDAYVTAIGLAQQVPTSSSRQLEASQLINQWSQQILLIAM
EVVKQDVPRAISIARKIPTSTLAYNSAQSQISIWQSWLNLSEPVEDRTLPSDPYQESRAEKSRILTDERDKPLVSTPKFT
DNN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 81583; Mature: 81583

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSLLAAQDKAYMNEKHKTIGQGRILSQMKPRDETQWQLSEPRKNRQERLQEIRANGSQI
CCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
KTYKSPAKYSNQQKKSVSQIKKTESKKGKSTNNLGSIYGPLLILLLVIVPTGASITAISA
ECCCCHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
LLKLPYNEDCESTYWRTASASKRLYCAQLLATSPTLDSLLKAIDLVDVLSNEHPMRPQVD
HHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHH
SYIEMWSKKILSLGDLAFQDGKLEEAITIAERVPQKVPAYSLVEQQIQEWQKTWNQAEGN
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHCCCC
YQQTQEYLREEEWHQASIEASRLLSVPNVHWGTKKYQKLINDIKKTRKEGAKLEEVRELG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
EAGGLNNLTNGIKQAQEIEENSYLYQKAKKLIVNLGKKVIDIALVKLNAGNWQEALEDVN
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHH
KVPKNDALLELVEDIEVLARAHSPANLSTIAGYKDAIAQVKRLKAERPFYSKAQELISLW
HCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
EQEIADVTIIEEGKKLALPRGISDFKAAIAKVQTISPYNPRGKEATTLIKAWSKELQRQE
HHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
DQPFLEKAKKLASFGDMSSLQAAISEASQIGRGRTLYQEAQSQINRWTEQVERFQDQPII
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH
AQAELLASSGKIEQAITKAQEIKSGRILYNQARAKIQQWQAQQDTKIKLESARQVAQTAT
HHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
TDAYVTAIGLAQQVPTSSSRQLEASQLINQWSQQILLIAMEVVKQDVPRAISIARKIPTS
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
TLAYNSAQSQISIWQSWLNLSEPVEDRTLPSDPYQESRAEKSRILTDERDKPLVSTPKFT
HHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
DNN
CCC
>Mature Secondary Structure
MYSLLAAQDKAYMNEKHKTIGQGRILSQMKPRDETQWQLSEPRKNRQERLQEIRANGSQI
CCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
KTYKSPAKYSNQQKKSVSQIKKTESKKGKSTNNLGSIYGPLLILLLVIVPTGASITAISA
ECCCCHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
LLKLPYNEDCESTYWRTASASKRLYCAQLLATSPTLDSLLKAIDLVDVLSNEHPMRPQVD
HHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHH
SYIEMWSKKILSLGDLAFQDGKLEEAITIAERVPQKVPAYSLVEQQIQEWQKTWNQAEGN
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHCCCC
YQQTQEYLREEEWHQASIEASRLLSVPNVHWGTKKYQKLINDIKKTRKEGAKLEEVRELG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
EAGGLNNLTNGIKQAQEIEENSYLYQKAKKLIVNLGKKVIDIALVKLNAGNWQEALEDVN
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHH
KVPKNDALLELVEDIEVLARAHSPANLSTIAGYKDAIAQVKRLKAERPFYSKAQELISLW
HCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
EQEIADVTIIEEGKKLALPRGISDFKAAIAKVQTISPYNPRGKEATTLIKAWSKELQRQE
HHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC
DQPFLEKAKKLASFGDMSSLQAAISEASQIGRGRTLYQEAQSQINRWTEQVERFQDQPII
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH
AQAELLASSGKIEQAITKAQEIKSGRILYNQARAKIQQWQAQQDTKIKLESARQVAQTAT
HHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
TDAYVTAIGLAQQVPTSSSRQLEASQLINQWSQQILLIAMEVVKQDVPRAISIARKIPTS
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
TLAYNSAQSQISIWQSWLNLSEPVEDRTLPSDPYQESRAEKSRILTDERDKPLVSTPKFT
HHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
DNN
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA