| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475919
Identifier: 113475919
GI number: 113475919
Start: 3549171
End: 3551342
Strand: Reverse
Name: 113475919
Synonym: Tery_2281
Alternate gene names: NA
Gene position: 3551342-3549171 (Counterclockwise)
Preceding gene: 113475920
Following gene: 113475918
Centisome position: 45.82
GC content: 37.15
Gene sequence:
>2172_bases ATGTATTCATTGCTTGCTGCTCAGGATAAAGCATATATGAATGAAAAGCACAAAACTATAGGCCAAGGCCGGATACTATC ACAGATGAAGCCAAGAGACGAAACTCAATGGCAATTGTCTGAACCTCGGAAAAACCGGCAAGAAAGGCTGCAGGAAATTA GAGCAAATGGTAGTCAGATCAAGACTTACAAATCTCCTGCAAAATACTCCAATCAACAAAAAAAATCAGTTTCCCAAATC AAAAAAACTGAGTCAAAAAAAGGGAAATCTACAAACAATCTAGGGTCTATCTATGGGCCTTTATTGATACTACTACTGGT GATAGTTCCGACTGGAGCTAGCATAACAGCTATCTCAGCTTTATTGAAGTTACCCTATAATGAAGATTGTGAGTCAACTT ACTGGCGTACTGCATCTGCTAGTAAACGTCTTTATTGTGCCCAGTTGTTAGCGACTTCTCCAACTCTTGATAGTTTGCTT AAAGCAATTGATTTAGTAGATGTTTTATCCAATGAGCATCCAATGCGTCCACAAGTAGATAGTTATATTGAAATGTGGTC AAAAAAAATATTGTCCTTGGGAGATTTAGCTTTTCAAGATGGAAAATTAGAAGAAGCTATTACCATTGCTGAAAGAGTCC CCCAGAAAGTGCCAGCTTACTCACTGGTAGAACAACAGATTCAAGAGTGGCAAAAAACTTGGAATCAAGCGGAAGGAAAT TACCAGCAGACTCAAGAATATTTGCGTGAAGAAGAATGGCATCAAGCTTCAATAGAAGCTTCTCGTTTATTATCAGTGCC AAATGTTCACTGGGGAACAAAAAAATATCAGAAATTAATTAATGATATTAAAAAAACTCGTAAAGAGGGTGCTAAATTAG AAGAAGTACGAGAACTTGGAGAAGCAGGTGGACTAAATAATCTGACTAATGGGATTAAACAAGCTCAAGAAATTGAAGAA AATAGCTATCTCTATCAGAAAGCTAAAAAGTTAATAGTAAATTTGGGAAAAAAAGTAATAGATATAGCTTTAGTCAAATT AAACGCAGGAAATTGGCAAGAGGCACTTGAAGATGTCAATAAGGTTCCCAAAAATGATGCCTTACTGGAATTAGTAGAAG ATATAGAAGTTTTAGCTCGTGCCCATTCCCCAGCTAATTTATCTACAATAGCAGGATATAAAGATGCTATTGCTCAAGTA AAAAGACTTAAGGCTGAACGACCTTTTTACAGCAAAGCTCAAGAGTTAATTAGTCTTTGGGAACAAGAAATAGCAGATGT GACTATTATTGAAGAAGGAAAAAAACTAGCCTTACCTAGAGGAATTAGTGATTTTAAAGCAGCGATCGCTAAAGTTCAGA CTATTTCTCCCTATAACCCTCGTGGAAAAGAAGCAACTACTTTGATAAAAGCTTGGAGTAAAGAACTACAGAGACAAGAG GATCAGCCTTTTTTGGAGAAAGCCAAAAAATTAGCAAGCTTTGGTGATATGAGTTCTCTACAAGCAGCAATTTCTGAAGC CAGTCAAATTGGTAGAGGTAGAACTCTATATCAGGAAGCTCAAAGTCAAATTAATAGGTGGACAGAACAAGTTGAACGTT TTCAAGACCAACCAATTATTGCTCAAGCAGAACTTCTAGCGTCTTCAGGTAAGATAGAACAGGCAATTACCAAAGCTCAA GAAATCAAATCAGGTAGAATCCTCTATAATCAAGCCAGAGCTAAAATTCAACAGTGGCAAGCTCAACAAGATACCAAAAT TAAATTAGAAAGTGCTCGTCAAGTAGCGCAAACAGCAACAACAGATGCTTATGTTACAGCAATTGGTTTAGCACAACAAG TACCAACTTCTAGTTCTAGGCAATTAGAAGCTTCTCAATTGATTAATCAATGGAGTCAACAAATATTGTTAATTGCTATG GAGGTTGTGAAGCAAGATGTGCCACGAGCCATCTCAATTGCTAGGAAAATTCCGACGAGTACTCTAGCTTATAATTCAGC TCAGAGTCAAATTAGTATTTGGCAAAGTTGGCTTAACCTTTCTGAGCCTGTAGAAGATCGGACTCTACCTTCAGACCCAT ATCAGGAGTCGAGGGCAGAAAAATCAAGGATTTTAACGGATGAGAGAGATAAACCTTTGGTATCTACACCAAAATTTACT GACAATAACTAA
Upstream 100 bases:
>100_bases AGTGTATATCTAAGAACCGCATATAATTAAATTAATTTAATTTGAATTTAGATGAAAGCTTGTTTGTAGGCTAAATCAAC CGGAAAGTAATGAGACGTTA
Downstream 100 bases:
>100_bases AGTTCAGGATGGTAATGATTGGCCATTATGTGCTAAATGAGGATATATCTTATAAAATGGACAAAAAAAGAAGATATGCT AAAAGTGCTAATTACTAATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 723; Mature: 723
Protein sequence:
>723_residues MYSLLAAQDKAYMNEKHKTIGQGRILSQMKPRDETQWQLSEPRKNRQERLQEIRANGSQIKTYKSPAKYSNQQKKSVSQI KKTESKKGKSTNNLGSIYGPLLILLLVIVPTGASITAISALLKLPYNEDCESTYWRTASASKRLYCAQLLATSPTLDSLL KAIDLVDVLSNEHPMRPQVDSYIEMWSKKILSLGDLAFQDGKLEEAITIAERVPQKVPAYSLVEQQIQEWQKTWNQAEGN YQQTQEYLREEEWHQASIEASRLLSVPNVHWGTKKYQKLINDIKKTRKEGAKLEEVRELGEAGGLNNLTNGIKQAQEIEE NSYLYQKAKKLIVNLGKKVIDIALVKLNAGNWQEALEDVNKVPKNDALLELVEDIEVLARAHSPANLSTIAGYKDAIAQV KRLKAERPFYSKAQELISLWEQEIADVTIIEEGKKLALPRGISDFKAAIAKVQTISPYNPRGKEATTLIKAWSKELQRQE DQPFLEKAKKLASFGDMSSLQAAISEASQIGRGRTLYQEAQSQINRWTEQVERFQDQPIIAQAELLASSGKIEQAITKAQ EIKSGRILYNQARAKIQQWQAQQDTKIKLESARQVAQTATTDAYVTAIGLAQQVPTSSSRQLEASQLINQWSQQILLIAM EVVKQDVPRAISIARKIPTSTLAYNSAQSQISIWQSWLNLSEPVEDRTLPSDPYQESRAEKSRILTDERDKPLVSTPKFT DNN
Sequences:
>Translated_723_residues MYSLLAAQDKAYMNEKHKTIGQGRILSQMKPRDETQWQLSEPRKNRQERLQEIRANGSQIKTYKSPAKYSNQQKKSVSQI KKTESKKGKSTNNLGSIYGPLLILLLVIVPTGASITAISALLKLPYNEDCESTYWRTASASKRLYCAQLLATSPTLDSLL KAIDLVDVLSNEHPMRPQVDSYIEMWSKKILSLGDLAFQDGKLEEAITIAERVPQKVPAYSLVEQQIQEWQKTWNQAEGN YQQTQEYLREEEWHQASIEASRLLSVPNVHWGTKKYQKLINDIKKTRKEGAKLEEVRELGEAGGLNNLTNGIKQAQEIEE NSYLYQKAKKLIVNLGKKVIDIALVKLNAGNWQEALEDVNKVPKNDALLELVEDIEVLARAHSPANLSTIAGYKDAIAQV KRLKAERPFYSKAQELISLWEQEIADVTIIEEGKKLALPRGISDFKAAIAKVQTISPYNPRGKEATTLIKAWSKELQRQE DQPFLEKAKKLASFGDMSSLQAAISEASQIGRGRTLYQEAQSQINRWTEQVERFQDQPIIAQAELLASSGKIEQAITKAQ EIKSGRILYNQARAKIQQWQAQQDTKIKLESARQVAQTATTDAYVTAIGLAQQVPTSSSRQLEASQLINQWSQQILLIAM EVVKQDVPRAISIARKIPTSTLAYNSAQSQISIWQSWLNLSEPVEDRTLPSDPYQESRAEKSRILTDERDKPLVSTPKFT DNN >Mature_723_residues MYSLLAAQDKAYMNEKHKTIGQGRILSQMKPRDETQWQLSEPRKNRQERLQEIRANGSQIKTYKSPAKYSNQQKKSVSQI KKTESKKGKSTNNLGSIYGPLLILLLVIVPTGASITAISALLKLPYNEDCESTYWRTASASKRLYCAQLLATSPTLDSLL KAIDLVDVLSNEHPMRPQVDSYIEMWSKKILSLGDLAFQDGKLEEAITIAERVPQKVPAYSLVEQQIQEWQKTWNQAEGN YQQTQEYLREEEWHQASIEASRLLSVPNVHWGTKKYQKLINDIKKTRKEGAKLEEVRELGEAGGLNNLTNGIKQAQEIEE NSYLYQKAKKLIVNLGKKVIDIALVKLNAGNWQEALEDVNKVPKNDALLELVEDIEVLARAHSPANLSTIAGYKDAIAQV KRLKAERPFYSKAQELISLWEQEIADVTIIEEGKKLALPRGISDFKAAIAKVQTISPYNPRGKEATTLIKAWSKELQRQE DQPFLEKAKKLASFGDMSSLQAAISEASQIGRGRTLYQEAQSQINRWTEQVERFQDQPIIAQAELLASSGKIEQAITKAQ EIKSGRILYNQARAKIQQWQAQQDTKIKLESARQVAQTATTDAYVTAIGLAQQVPTSSSRQLEASQLINQWSQQILLIAM EVVKQDVPRAISIARKIPTSTLAYNSAQSQISIWQSWLNLSEPVEDRTLPSDPYQESRAEKSRILTDERDKPLVSTPKFT DNN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81583; Mature: 81583
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYSLLAAQDKAYMNEKHKTIGQGRILSQMKPRDETQWQLSEPRKNRQERLQEIRANGSQI CCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE KTYKSPAKYSNQQKKSVSQIKKTESKKGKSTNNLGSIYGPLLILLLVIVPTGASITAISA ECCCCHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH LLKLPYNEDCESTYWRTASASKRLYCAQLLATSPTLDSLLKAIDLVDVLSNEHPMRPQVD HHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHH SYIEMWSKKILSLGDLAFQDGKLEEAITIAERVPQKVPAYSLVEQQIQEWQKTWNQAEGN HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHCCCC YQQTQEYLREEEWHQASIEASRLLSVPNVHWGTKKYQKLINDIKKTRKEGAKLEEVRELG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH EAGGLNNLTNGIKQAQEIEENSYLYQKAKKLIVNLGKKVIDIALVKLNAGNWQEALEDVN HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHH KVPKNDALLELVEDIEVLARAHSPANLSTIAGYKDAIAQVKRLKAERPFYSKAQELISLW HCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH EQEIADVTIIEEGKKLALPRGISDFKAAIAKVQTISPYNPRGKEATTLIKAWSKELQRQE HHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC DQPFLEKAKKLASFGDMSSLQAAISEASQIGRGRTLYQEAQSQINRWTEQVERFQDQPII CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH AQAELLASSGKIEQAITKAQEIKSGRILYNQARAKIQQWQAQQDTKIKLESARQVAQTAT HHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH TDAYVTAIGLAQQVPTSSSRQLEASQLINQWSQQILLIAMEVVKQDVPRAISIARKIPTS HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH TLAYNSAQSQISIWQSWLNLSEPVEDRTLPSDPYQESRAEKSRILTDERDKPLVSTPKFT HHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC DNN CCC >Mature Secondary Structure MYSLLAAQDKAYMNEKHKTIGQGRILSQMKPRDETQWQLSEPRKNRQERLQEIRANGSQI CCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE KTYKSPAKYSNQQKKSVSQIKKTESKKGKSTNNLGSIYGPLLILLLVIVPTGASITAISA ECCCCHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH LLKLPYNEDCESTYWRTASASKRLYCAQLLATSPTLDSLLKAIDLVDVLSNEHPMRPQVD HHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHH SYIEMWSKKILSLGDLAFQDGKLEEAITIAERVPQKVPAYSLVEQQIQEWQKTWNQAEGN HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHCCCC YQQTQEYLREEEWHQASIEASRLLSVPNVHWGTKKYQKLINDIKKTRKEGAKLEEVRELG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH EAGGLNNLTNGIKQAQEIEENSYLYQKAKKLIVNLGKKVIDIALVKLNAGNWQEALEDVN HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHH KVPKNDALLELVEDIEVLARAHSPANLSTIAGYKDAIAQVKRLKAERPFYSKAQELISLW HCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH EQEIADVTIIEEGKKLALPRGISDFKAAIAKVQTISPYNPRGKEATTLIKAWSKELQRQE HHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC DQPFLEKAKKLASFGDMSSLQAAISEASQIGRGRTLYQEAQSQINRWTEQVERFQDQPII CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH AQAELLASSGKIEQAITKAQEIKSGRILYNQARAKIQQWQAQQDTKIKLESARQVAQTAT HHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH TDAYVTAIGLAQQVPTSSSRQLEASQLINQWSQQILLIAMEVVKQDVPRAISIARKIPTS HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH TLAYNSAQSQISIWQSWLNLSEPVEDRTLPSDPYQESRAEKSRILTDERDKPLVSTPKFT HHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC DNN CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA