| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475918
Identifier: 113475918
GI number: 113475918
Start: 3548049
End: 3548804
Strand: Reverse
Name: 113475918
Synonym: Tery_2280
Alternate gene names: NA
Gene position: 3548804-3548049 (Counterclockwise)
Preceding gene: 113475919
Following gene: 113475917
Centisome position: 45.79
GC content: 35.98
Gene sequence:
>756_bases ATGCCAAAGCTTGAAATAATTCCTACTATGGATTCTCAAAGTGAAACTAAACTAGAAAAAGTGAAGTCTCAAAGTGAAGG AGATCAAATAAACTTTGAAACTGAAACTTACAAAGATGCCTATAGCCGAATCAATGCAATAGTAATTGAAGGAGAGCAAG AAGCTTATAAAAATTATATTAAACTTGCCGAAATGCTTCCAGATGAAAAGGATGAGCTGATTAAGCTATCAAAAATGGAA AATCGTCACAAAAAAGGCTTTGAAGCTTGCGGTCGGAATCTTCATGTGACACCTGATATGGAGTTTGCCAAAAAGTTCTT TGAGCCACTTCATGAAAATTTCCAAACAGCAGCAGCTACAGGGAATGTGGTAACTTGTTTGTTAATTCAATCTCTAATTA TTGAATGCTTCGCGATCGCAGCATACAATATTTATATACCTGTGGCTGACCCCTTTGCTCGTAAAATTACTGAAAGTGTG GTCAAAGATGAATATAGTCACCTCAACTTTGGTGAAGTATGGCTAAAAGAATATTTTGAAGACTCTAAACAAGAGCTACA AAAAGCAAATCGCCAAAACTTGCCTCTAGTATGGAAAATGCTAAACCAGGTAGAGAAAGATGCTAAGACTTTGGAGATGG AAAAAGAAGCATTAATTGAGGATTTTATGATTGCTTATGGTGAAGCTCTAAACAATATTGGTTTTACTACTGGAGAAATT ATGCGGATGTCAGCTTATGGTCTGATTGCTGCATAG
Upstream 100 bases:
>100_bases TTCCAGAAAGTAAGTACAGTAAACTATAAGCTAAGTTAAGATTAATAAAGTATTTTTCTTTACCCTGTTGAAGCTATTTT GTGATGAGGAGATAACTAAC
Downstream 100 bases:
>100_bases TTAATTTTAATTAATAATGTGGAAATTAGAATGGGATTAATAGTTTTGGTTCCAAAGCTACTAATTATGCTAAAGTTCGA GAAATTAATTAGTTAAGGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MPKLEIIPTMDSQSETKLEKVKSQSEGDQINFETETYKDAYSRINAIVIEGEQEAYKNYIKLAEMLPDEKDELIKLSKME NRHKKGFEACGRNLHVTPDMEFAKKFFEPLHENFQTAAATGNVVTCLLIQSLIIECFAIAAYNIYIPVADPFARKITESV VKDEYSHLNFGEVWLKEYFEDSKQELQKANRQNLPLVWKMLNQVEKDAKTLEMEKEALIEDFMIAYGEALNNIGFTTGEI MRMSAYGLIAA
Sequences:
>Translated_251_residues MPKLEIIPTMDSQSETKLEKVKSQSEGDQINFETETYKDAYSRINAIVIEGEQEAYKNYIKLAEMLPDEKDELIKLSKME NRHKKGFEACGRNLHVTPDMEFAKKFFEPLHENFQTAAATGNVVTCLLIQSLIIECFAIAAYNIYIPVADPFARKITESV VKDEYSHLNFGEVWLKEYFEDSKQELQKANRQNLPLVWKMLNQVEKDAKTLEMEKEALIEDFMIAYGEALNNIGFTTGEI MRMSAYGLIAA >Mature_250_residues PKLEIIPTMDSQSETKLEKVKSQSEGDQINFETETYKDAYSRINAIVIEGEQEAYKNYIKLAEMLPDEKDELIKLSKMEN RHKKGFEACGRNLHVTPDMEFAKKFFEPLHENFQTAAATGNVVTCLLIQSLIIECFAIAAYNIYIPVADPFARKITESVV KDEYSHLNFGEVWLKEYFEDSKQELQKANRQNLPLVWKMLNQVEKDAKTLEMEKEALIEDFMIAYGEALNNIGFTTGEIM RMSAYGLIAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28803; Mature: 28672
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKLEIIPTMDSQSETKLEKVKSQSEGDQINFETETYKDAYSRINAIVIEGEQEAYKNYI CCCCEEEECCCCCHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHCEEEEECCHHHHHHHH KLAEMLPDEKDELIKLSKMENRHKKGFEACGRNLHVTPDMEFAKKFFEPLHENFQTAAAT HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC GNVVTCLLIQSLIIECFAIAAYNIYIPVADPFARKITESVVKDEYSHLNFGEVWLKEYFE CHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH DSKQELQKANRQNLPLVWKMLNQVEKDAKTLEMEKEALIEDFMIAYGEALNNIGFTTGEI HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH MRMSAYGLIAA HHHHHHHHHCC >Mature Secondary Structure PKLEIIPTMDSQSETKLEKVKSQSEGDQINFETETYKDAYSRINAIVIEGEQEAYKNYI CCCEEEECCCCCHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHCEEEEECCHHHHHHHH KLAEMLPDEKDELIKLSKMENRHKKGFEACGRNLHVTPDMEFAKKFFEPLHENFQTAAAT HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC GNVVTCLLIQSLIIECFAIAAYNIYIPVADPFARKITESVVKDEYSHLNFGEVWLKEYFE CHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH DSKQELQKANRQNLPLVWKMLNQVEKDAKTLEMEKEALIEDFMIAYGEALNNIGFTTGEI HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH MRMSAYGLIAA HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA