Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113475918

Identifier: 113475918

GI number: 113475918

Start: 3548049

End: 3548804

Strand: Reverse

Name: 113475918

Synonym: Tery_2280

Alternate gene names: NA

Gene position: 3548804-3548049 (Counterclockwise)

Preceding gene: 113475919

Following gene: 113475917

Centisome position: 45.79

GC content: 35.98

Gene sequence:

>756_bases
ATGCCAAAGCTTGAAATAATTCCTACTATGGATTCTCAAAGTGAAACTAAACTAGAAAAAGTGAAGTCTCAAAGTGAAGG
AGATCAAATAAACTTTGAAACTGAAACTTACAAAGATGCCTATAGCCGAATCAATGCAATAGTAATTGAAGGAGAGCAAG
AAGCTTATAAAAATTATATTAAACTTGCCGAAATGCTTCCAGATGAAAAGGATGAGCTGATTAAGCTATCAAAAATGGAA
AATCGTCACAAAAAAGGCTTTGAAGCTTGCGGTCGGAATCTTCATGTGACACCTGATATGGAGTTTGCCAAAAAGTTCTT
TGAGCCACTTCATGAAAATTTCCAAACAGCAGCAGCTACAGGGAATGTGGTAACTTGTTTGTTAATTCAATCTCTAATTA
TTGAATGCTTCGCGATCGCAGCATACAATATTTATATACCTGTGGCTGACCCCTTTGCTCGTAAAATTACTGAAAGTGTG
GTCAAAGATGAATATAGTCACCTCAACTTTGGTGAAGTATGGCTAAAAGAATATTTTGAAGACTCTAAACAAGAGCTACA
AAAAGCAAATCGCCAAAACTTGCCTCTAGTATGGAAAATGCTAAACCAGGTAGAGAAAGATGCTAAGACTTTGGAGATGG
AAAAAGAAGCATTAATTGAGGATTTTATGATTGCTTATGGTGAAGCTCTAAACAATATTGGTTTTACTACTGGAGAAATT
ATGCGGATGTCAGCTTATGGTCTGATTGCTGCATAG

Upstream 100 bases:

>100_bases
TTCCAGAAAGTAAGTACAGTAAACTATAAGCTAAGTTAAGATTAATAAAGTATTTTTCTTTACCCTGTTGAAGCTATTTT
GTGATGAGGAGATAACTAAC

Downstream 100 bases:

>100_bases
TTAATTTTAATTAATAATGTGGAAATTAGAATGGGATTAATAGTTTTGGTTCCAAAGCTACTAATTATGCTAAAGTTCGA
GAAATTAATTAGTTAAGGGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MPKLEIIPTMDSQSETKLEKVKSQSEGDQINFETETYKDAYSRINAIVIEGEQEAYKNYIKLAEMLPDEKDELIKLSKME
NRHKKGFEACGRNLHVTPDMEFAKKFFEPLHENFQTAAATGNVVTCLLIQSLIIECFAIAAYNIYIPVADPFARKITESV
VKDEYSHLNFGEVWLKEYFEDSKQELQKANRQNLPLVWKMLNQVEKDAKTLEMEKEALIEDFMIAYGEALNNIGFTTGEI
MRMSAYGLIAA

Sequences:

>Translated_251_residues
MPKLEIIPTMDSQSETKLEKVKSQSEGDQINFETETYKDAYSRINAIVIEGEQEAYKNYIKLAEMLPDEKDELIKLSKME
NRHKKGFEACGRNLHVTPDMEFAKKFFEPLHENFQTAAATGNVVTCLLIQSLIIECFAIAAYNIYIPVADPFARKITESV
VKDEYSHLNFGEVWLKEYFEDSKQELQKANRQNLPLVWKMLNQVEKDAKTLEMEKEALIEDFMIAYGEALNNIGFTTGEI
MRMSAYGLIAA
>Mature_250_residues
PKLEIIPTMDSQSETKLEKVKSQSEGDQINFETETYKDAYSRINAIVIEGEQEAYKNYIKLAEMLPDEKDELIKLSKMEN
RHKKGFEACGRNLHVTPDMEFAKKFFEPLHENFQTAAATGNVVTCLLIQSLIIECFAIAAYNIYIPVADPFARKITESVV
KDEYSHLNFGEVWLKEYFEDSKQELQKANRQNLPLVWKMLNQVEKDAKTLEMEKEALIEDFMIAYGEALNNIGFTTGEIM
RMSAYGLIAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28803; Mature: 28672

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKLEIIPTMDSQSETKLEKVKSQSEGDQINFETETYKDAYSRINAIVIEGEQEAYKNYI
CCCCEEEECCCCCHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHCEEEEECCHHHHHHHH
KLAEMLPDEKDELIKLSKMENRHKKGFEACGRNLHVTPDMEFAKKFFEPLHENFQTAAAT
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
GNVVTCLLIQSLIIECFAIAAYNIYIPVADPFARKITESVVKDEYSHLNFGEVWLKEYFE
CHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
DSKQELQKANRQNLPLVWKMLNQVEKDAKTLEMEKEALIEDFMIAYGEALNNIGFTTGEI
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
MRMSAYGLIAA
HHHHHHHHHCC
>Mature Secondary Structure 
PKLEIIPTMDSQSETKLEKVKSQSEGDQINFETETYKDAYSRINAIVIEGEQEAYKNYI
CCCEEEECCCCCHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHCEEEEECCHHHHHHHH
KLAEMLPDEKDELIKLSKMENRHKKGFEACGRNLHVTPDMEFAKKFFEPLHENFQTAAAT
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
GNVVTCLLIQSLIIECFAIAAYNIYIPVADPFARKITESVVKDEYSHLNFGEVWLKEYFE
CHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
DSKQELQKANRQNLPLVWKMLNQVEKDAKTLEMEKEALIEDFMIAYGEALNNIGFTTGEI
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
MRMSAYGLIAA
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA