Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113475877

Identifier: 113475877

GI number: 113475877

Start: 3481790

End: 3483193

Strand: Reverse

Name: 113475877

Synonym: Tery_2236

Alternate gene names: NA

Gene position: 3483193-3481790 (Counterclockwise)

Preceding gene: 113475878

Following gene: 113475876

Centisome position: 44.94

GC content: 31.2

Gene sequence:

>1404_bases
ATGACGATGAATCAATGTTTTTGTAATGTTATTGTTTCTAATGAAAATACGGTTAAACTCATAAAATTAACTCCTCAGTT
AGCTACTAAAGAGCAGTTAATAGGTAAGTTAAATCTTGACAAAATTAACGATAAGATTAGAGAAATTATTAAAGCTCCTA
CTAATTTGAAAGGTGAACAAATTACTAAGGTGGGAGAAGCTTTGTTTGAGGCTTTGTTTGATGCTCAGTTAAGAGAATAT
TTTTTGGCATACTATCAAGATATTCTCAAACAACAGGATGCAAATTTGGGAATTATTTTAGAAATAAATGAGGAAGCTAT
GCCGGAAGTTGTAGCTTATCCTTGGGAGTTAATGTGTTTACCTGAGAAATATAATCAAGGTCAAATTTATTTCGCTACTA
ATCGTAAATTAAGTTTTTACCGTCGTAGATATCAATTAGAAGAATCAAATAAATTATCTATTAAAATTAATCAGGATGAA
CAGTTAAAAATTGCTTTAGTTGTCTCGAAACCGACGGCTGATTCTGGATTAAGTGATGTGGAATATTATGAGGTACATAA
ATACTTAAAAAGTATAGATACTAAACAGGAGCAAGTTAAATTTTTACCTGTTATGAATTCTCTAGATTTCTATAGTATTG
TAGAAAGATTAGAAACTGAGAAACCGGATATTTTTCATTTTATTGGTCACGGTCAATTAGTTGAGAAAAATGGAGAAGAT
TTAGGACAGGTTGCTTTTGTTAATGAGTTTGGTGAAGCTGATTGGAAAGATGCTAAAATGTTTTGTCAATTGTTTACTGG
TCATCAACCTAAAGTTGTGATTTTACAAGCTTGTGAAACTGGAAAACAATCTGAAACTAATGCTTTTAGTAGTCTGGCTT
CTCGCTTAATGCTTGAGGGAATTCCGGTGGTTATAGCTATGCAATATAAGGTTTCTAATCAAACGGCGATTATTTTTGTG
AAGGAGTTTTATTCAAAAATAATAGATGGTAATTCTGTTGAGATGGCGGTACAGAAGGCTCGGTTTAAGTTGCGTATTGA
GAAGGGTTATGAGGCAAGAGATTTTGCAATTCCTGTTGTGTTTATGAATGCTTTAGATGGTTATTTATTTGCCAAAGAAT
CTATGGAGATAACTCAGAAAAAAAATGGTTTCTTGAGTTTAACGGGGGAACAAAGAAGAAAATTTCGTGAAGAGATTGAA
AGGGTATTAAGTGAGGATAAACTGACAAGTATATTTTCTGAATATCCAGAGAAATTTGGAGATAATTTTTATAATCAAAT
TCCAGGAGGTGACTATCGTACAAGGTTGATTAATTTAATCATTGAGCTAAATAATAGAGAACTTATTTTTGATTTTATTA
AAGTTGTTAGGTATGAGTATCATAATTTTGCTCAAGATTTATAA

Upstream 100 bases:

>100_bases
TTTGCGGTTGGGATAAAGGAAGAATGGACTAGTCAGTGGGAAAAACAAATTAGCTTACCAAAACTGTAGATTATTTACTT
TTTGATTGTTCTTAATTTTT

Downstream 100 bases:

>100_bases
ATAGTAGATAAAATAGTAATGTAAGTACATTGCAAATGAAATTTACTGATAAGCAAAGAATCAAATTTCGTGAAGAGATT
GAAAGGGTATTAAGTGAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MTMNQCFCNVIVSNENTVKLIKLTPQLATKEQLIGKLNLDKINDKIREIIKAPTNLKGEQITKVGEALFEALFDAQLREY
FLAYYQDILKQQDANLGIILEINEEAMPEVVAYPWELMCLPEKYNQGQIYFATNRKLSFYRRRYQLEESNKLSIKINQDE
QLKIALVVSKPTADSGLSDVEYYEVHKYLKSIDTKQEQVKFLPVMNSLDFYSIVERLETEKPDIFHFIGHGQLVEKNGED
LGQVAFVNEFGEADWKDAKMFCQLFTGHQPKVVILQACETGKQSETNAFSSLASRLMLEGIPVVIAMQYKVSNQTAIIFV
KEFYSKIIDGNSVEMAVQKARFKLRIEKGYEARDFAIPVVFMNALDGYLFAKESMEITQKKNGFLSLTGEQRRKFREEIE
RVLSEDKLTSIFSEYPEKFGDNFYNQIPGGDYRTRLINLIIELNNRELIFDFIKVVRYEYHNFAQDL

Sequences:

>Translated_467_residues
MTMNQCFCNVIVSNENTVKLIKLTPQLATKEQLIGKLNLDKINDKIREIIKAPTNLKGEQITKVGEALFEALFDAQLREY
FLAYYQDILKQQDANLGIILEINEEAMPEVVAYPWELMCLPEKYNQGQIYFATNRKLSFYRRRYQLEESNKLSIKINQDE
QLKIALVVSKPTADSGLSDVEYYEVHKYLKSIDTKQEQVKFLPVMNSLDFYSIVERLETEKPDIFHFIGHGQLVEKNGED
LGQVAFVNEFGEADWKDAKMFCQLFTGHQPKVVILQACETGKQSETNAFSSLASRLMLEGIPVVIAMQYKVSNQTAIIFV
KEFYSKIIDGNSVEMAVQKARFKLRIEKGYEARDFAIPVVFMNALDGYLFAKESMEITQKKNGFLSLTGEQRRKFREEIE
RVLSEDKLTSIFSEYPEKFGDNFYNQIPGGDYRTRLINLIIELNNRELIFDFIKVVRYEYHNFAQDL
>Mature_466_residues
TMNQCFCNVIVSNENTVKLIKLTPQLATKEQLIGKLNLDKINDKIREIIKAPTNLKGEQITKVGEALFEALFDAQLREYF
LAYYQDILKQQDANLGIILEINEEAMPEVVAYPWELMCLPEKYNQGQIYFATNRKLSFYRRRYQLEESNKLSIKINQDEQ
LKIALVVSKPTADSGLSDVEYYEVHKYLKSIDTKQEQVKFLPVMNSLDFYSIVERLETEKPDIFHFIGHGQLVEKNGEDL
GQVAFVNEFGEADWKDAKMFCQLFTGHQPKVVILQACETGKQSETNAFSSLASRLMLEGIPVVIAMQYKVSNQTAIIFVK
EFYSKIIDGNSVEMAVQKARFKLRIEKGYEARDFAIPVVFMNALDGYLFAKESMEITQKKNGFLSLTGEQRRKFREEIER
VLSEDKLTSIFSEYPEKFGDNFYNQIPGGDYRTRLINLIIELNNRELIFDFIKVVRYEYHNFAQDL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54147; Mature: 54016

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMNQCFCNVIVSNENTVKLIKLTPQLATKEQLIGKLNLDKINDKIREIIKAPTNLKGEQ
CCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH
ITKVGEALFEALFDAQLREYFLAYYQDILKQQDANLGIILEINEEAMPEVVAYPWELMCL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHCCHHHCCCEEEEEE
PEKYNQGQIYFATNRKLSFYRRRYQLEESNKLSIKINQDEQLKIALVVSKPTADSGLSDV
CCCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCH
EYYEVHKYLKSIDTKQEQVKFLPVMNSLDFYSIVERLETEKPDIFHFIGHGQLVEKNGED
HHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEECCCEEEECCCCC
LGQVAFVNEFGEADWKDAKMFCQLFTGHQPKVVILQACETGKQSETNAFSSLASRLMLEG
HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCC
IPVVIAMQYKVSNQTAIIFVKEFYSKIIDGNSVEMAVQKARFKLRIEKGYEARDFAIPVV
CCEEEEEEEEECCCEEEEEHHHHHHHHHCCCHHHHHHHHHHHEEEEECCCCCCHHEEHHH
FMNALDGYLFAKESMEITQKKNGFLSLTGEQRRKFREEIERVLSEDKLTSIFSEYPEKFG
HHHHHCCCEEECCCHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DNFYNQIPGGDYRTRLINLIIELNNRELIFDFIKVVRYEYHNFAQDL
CHHHHCCCCCHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TMNQCFCNVIVSNENTVKLIKLTPQLATKEQLIGKLNLDKINDKIREIIKAPTNLKGEQ
CCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH
ITKVGEALFEALFDAQLREYFLAYYQDILKQQDANLGIILEINEEAMPEVVAYPWELMCL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHCCHHHCCCEEEEEE
PEKYNQGQIYFATNRKLSFYRRRYQLEESNKLSIKINQDEQLKIALVVSKPTADSGLSDV
CCCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCH
EYYEVHKYLKSIDTKQEQVKFLPVMNSLDFYSIVERLETEKPDIFHFIGHGQLVEKNGED
HHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEECCCEEEECCCCC
LGQVAFVNEFGEADWKDAKMFCQLFTGHQPKVVILQACETGKQSETNAFSSLASRLMLEG
HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCC
IPVVIAMQYKVSNQTAIIFVKEFYSKIIDGNSVEMAVQKARFKLRIEKGYEARDFAIPVV
CCEEEEEEEEECCCEEEEEHHHHHHHHHCCCHHHHHHHHHHHEEEEECCCCCCHHEEHHH
FMNALDGYLFAKESMEITQKKNGFLSLTGEQRRKFREEIERVLSEDKLTSIFSEYPEKFG
HHHHHCCCEEECCCHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DNFYNQIPGGDYRTRLINLIIELNNRELIFDFIKVVRYEYHNFAQDL
CHHHHCCCCCHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA