| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475807
Identifier: 113475807
GI number: 113475807
Start: 3375683
End: 3376036
Strand: Reverse
Name: 113475807
Synonym: Tery_2162
Alternate gene names: NA
Gene position: 3376036-3375683 (Counterclockwise)
Preceding gene: 113475808
Following gene: 113475806
Centisome position: 43.56
GC content: 35.03
Gene sequence:
>354_bases GTGGCAATTGTTAAAACCATTAGCCAACTTGGCAATGAAAAAATTGAAATCAATATTCAGGTTAATGATGATTTTAAAGT TCAAAATAATCCTAAGCCTTTGTCTCGAGGTAATTCGGGAAAAGAAGTTATTGCGGCAGCAAAGGATTTATTTGGGGATG GTTTGGCTTTAACTCGTAATTGTGCTGCTAAAGTCATAGAAAGTGTCAACCAAATGAGCGATGATATTAAACCTAATGAA TTTGAAATGAAATTGTCAATTACTTTAGATTCTGAGGCAGGTGTACCAATGTTGGCAAAAGCAGGTGCAGAAGCGCAAAT GGAAGTTACCATGAAATGGAAATTAAAAGAGTAA
Upstream 100 bases:
>100_bases CAGAGATTATAGCCACCGGTTACTAGTCCCCATCCCATCCGTAAAAGGGGAGCTGTGGAGGTGGGTCAGTTATAATGTTA ATTTTTGGAGGATATGATTT
Downstream 100 bases:
>100_bases TATTTATATATAGGATGTTAGGTTTTAGGTTTTAGGTTTCAGGTGTTAGGTATTAGGTATCATGTTTAAAAATTAAGAAA GTTCACTCTTTTTTTCTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 117; Mature: 116
Protein sequence:
>117_residues MAIVKTISQLGNEKIEINIQVNDDFKVQNNPKPLSRGNSGKEVIAAAKDLFGDGLALTRNCAAKVIESVNQMSDDIKPNE FEMKLSITLDSEAGVPMLAKAGAEAQMEVTMKWKLKE
Sequences:
>Translated_117_residues MAIVKTISQLGNEKIEINIQVNDDFKVQNNPKPLSRGNSGKEVIAAAKDLFGDGLALTRNCAAKVIESVNQMSDDIKPNE FEMKLSITLDSEAGVPMLAKAGAEAQMEVTMKWKLKE >Mature_116_residues AIVKTISQLGNEKIEINIQVNDDFKVQNNPKPLSRGNSGKEVIAAAKDLFGDGLALTRNCAAKVIESVNQMSDDIKPNEF EMKLSITLDSEAGVPMLAKAGAEAQMEVTMKWKLKE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12764; Mature: 12633
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIVKTISQLGNEKIEINIQVNDDFKVQNNPKPLSRGNSGKEVIAAAKDLFGDGLALTRN CHHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH CAAKVIESVNQMSDDIKPNEFEMKLSITLDSEAGVPMLAKAGAEAQMEVTMKWKLKE HHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCEEECCCCCCEEEEEEEEEECC >Mature Secondary Structure AIVKTISQLGNEKIEINIQVNDDFKVQNNPKPLSRGNSGKEVIAAAKDLFGDGLALTRN HHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH CAAKVIESVNQMSDDIKPNEFEMKLSITLDSEAGVPMLAKAGAEAQMEVTMKWKLKE HHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCEEECCCCCCEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA