Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is pkn1 [H]

Identifier: 113475724

GI number: 113475724

Start: 3233969

End: 3236647

Strand: Reverse

Name: pkn1 [H]

Synonym: Tery_2071

Alternate gene names: 113475724

Gene position: 3236647-3233969 (Counterclockwise)

Preceding gene: 113475725

Following gene: 113475723

Centisome position: 41.76

GC content: 36.95

Gene sequence:

>2679_bases
ATGTCGATTTCTAACTTCATAGAAGGATTACAAAAAGCTAATTATGACCCAACTGCTAGAGAAATAGCAGAAATAATTTG
GTTATGGGTAAAAACTTTGCCGGATGGAGAATTAGAATTATTAGAAACTGATAAAAAAGATGCTCAAGGATCTGAATCAA
ACAATCAAATTTACTCAGAGAAAAATAGACGAAATTTAAAAGTTAATATTCCTGAACTTCCAGCAAAAACAAATTTAGAT
CTTTATCCGAAAGCTGCTGCTGATAAATATTTACCTAAAACAGACAATAATAAAAAGGAACGTTACCCTCTACAAGTTCC
CGATGCTCCAGCTATTCCCAATAAACAGGAGCTTGGTATTGCTTTAAAATCTTTACGCCGAAAATTTCCATCCTCAACAG
AACAGGAATTAAACGAAGCTAAAACTATTGATTTTTTTGTCGAACAAAAGATTTGGATGCCCATTAAACAACCAACTTTA
ACCCGTCGTTGGCTAGATTTAGTATTGGTTATAGAAGTAAATAACTCCCTCGTAATTTGGAAACAAACTATTAAAGAGTT
GAGGAAATTTCTCCAAAGTTTGGGGATTTTTCGTCATACTGAAACTAGGGGATTAAAATTTAATTCTTCTCAACTATTAC
ATCAGGAATTGTTGTTTAAACTTATTGTTAGGGTATCTCCTGAATTTATACTATTTTTGATTTTATCCTCTCAAAACCAA
AGGATTGAAATTTTCCACTACGATGATCCTCAGATGCGTCCCTACTCTCCAGAATTTATTGGGGCTACCAGTGGAAAAAC
TTTAATTCTATTAGTAAGCGATCTAGTTTCTTCTGTTTGGTCTCGCCCAGAAACCTATACTCTTTTGCAGGAGTGGGGGC
GAAAAGGGATGGTAAATTTATTGCAGCTTCTACCAGAACGTTTGTGGCTCCGCACTAATCTTGGTCAACAAAAGTCTTTA
AAATTAAATGCTTCTGTTCGTCTTACTTCTAATCAGAATTTAACTATTATTCCTAGTTCAAAAAAACAAGAAATTTCTCA
AGATGGAGAATTTAAATTACCCGTCCTTTGTCTTGACCCTAATATTTTAGAAGAATGGTCAAAATTATTAATGGGAGTAG
GAAATAATCAGTCTGTTGGTTATGGAATTAAGCCTGATAATCATCGTTATTCTAACTTTGTTCAAGAAGAAATTACGGCT
ACCGAAAGAGTAGAAAGGTTTCAAGAAATTGCCTCACCTAATGCCGTTAGACTAGCTGAACATCTCTCCGCAGTTCTTGT
TACTTTACCTGTGATTAGAGTAATTCAATATACTATGCTTCCTCAGTTCAACCAAGGTCATGTGGCAGAAGTATTAATGG
GAGGGTTATTTAAACCTTTAAGTGAAAAAATCACCCCTAATATTAATCCAGATGAAATCGAATTTGAGTTTTTTGATGGG
GTGCGGGATGAACTATTGAGTGGGTTAACTGTTGATGAAATTACCGATGTTATTGAGGAAGTATCTTCTTATTTAGCTGA
GAAAATGGGAATAAGTCCCAAAGAATTTGAAGCTCTGTTGATAGATTCTTCAAAACCTGAGAATAAGCTAGCTAAACAGG
TTTATCCTTTAGCTCAAGTTCAGGCAGAAGTATTGGAGAAATTAGGGGGTTCTTATGCTTATTTTGCTAATCAAATAAGA
GCTTCTAATACTGGTTCTACTAATGAAATAAAAGATTTAATTGAGTTTGAAACTGAAATTGAAATTGCTACTATTGTTTT
TGAAGAAGAAACTAAGGAAGTTGAAATAGAATTACAAGAGTGGAGTTTTGAAACTCCTACTGTTAACAGGCTGGGTAAAA
TTGTCGAAAGAACAATTCATAAAGCTTTTTACTTTACTCAAAGCCTTCCAGATAACGTTAGTCTAGAAATGGTGGCTATT
CCTAGTGGTACTTTTACTATGGGTTCCCCTAAAAGTGAAGAAGGTAGCTATGATGATGAACGCCCCCAACATGATGTGAC
TGTCCCTTCCTTTTTTATGGGCAAATATCCCGTTACTCAAGGACAGTGGAGAGCGATCGCCTCCCGAACAGACCTGAAAG
AAAAAGAAGACCTAAACCCAGATCCATCTCGTTTTAAAAAACCATATAAAGGTATAGATAGATGGCAAAGGCCAGTTGAG
ACGGTGAGTTGGTACAAAGCAGTAGAATTTTGTAAAAGACTATCGAAATTAACTGGAAAAAAGTACAGGTTGCCCAGTGA
AGCAGAATGGGAATATGCCTGTCGGGCAGGAACTACTACACCTTTCTACTTTGGAGAAACTATAACACCTGAGTTAGTTA
ACTATGATGGTAATATTACTTACGGCGATGGGCCCAAAGGAGAATATAAAAAACAAACAACTCCTGTAGGCCAATTTCCT
GCTAATGCTTTTGGATTATATGATATGCATGGAAACGTGTGGGAATGGTGTGCTGATGATAGCCATGATAACTATGTGGG
AGCTCCTACAGATGGAAGCGCTTGGGTTGATAGTAACGAAGACAGTTCTACTGATAGTTATACCCGTCTGCGGGGCGGTT
CTTGGTGCAACTCTCCTATTGATTGCCGTTCTGCGGTTCGCAGCGGCTATCTTAGGCGCGACGTCCACGTCAGCTATGAT
GGTTTTCGTCTTGTCTGCGATGGCGGGAGAACTCTTTAA

Upstream 100 bases:

>100_bases
CAACAAAAAGAAAACGCTTATTGAGAAATGTTGGGGTGCAGTTCGAGGGGGGAGCGCTCGGACTGCATACTAACACCTGC
CACCTAAAACCTAAGGCCTA

Downstream 100 bases:

>100_bases
CCCTTTTCCCTTTTCCCCTTTTGCCCTTTACACTATGTTTCTTTTTCCTTTACCTCCCGCGAAGCGGGAAAAATTTTTTT
GATGTCCAAGTGTCAAGTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 892; Mature: 891

Protein sequence:

>892_residues
MSISNFIEGLQKANYDPTAREIAEIIWLWVKTLPDGELELLETDKKDAQGSESNNQIYSEKNRRNLKVNIPELPAKTNLD
LYPKAAADKYLPKTDNNKKERYPLQVPDAPAIPNKQELGIALKSLRRKFPSSTEQELNEAKTIDFFVEQKIWMPIKQPTL
TRRWLDLVLVIEVNNSLVIWKQTIKELRKFLQSLGIFRHTETRGLKFNSSQLLHQELLFKLIVRVSPEFILFLILSSQNQ
RIEIFHYDDPQMRPYSPEFIGATSGKTLILLVSDLVSSVWSRPETYTLLQEWGRKGMVNLLQLLPERLWLRTNLGQQKSL
KLNASVRLTSNQNLTIIPSSKKQEISQDGEFKLPVLCLDPNILEEWSKLLMGVGNNQSVGYGIKPDNHRYSNFVQEEITA
TERVERFQEIASPNAVRLAEHLSAVLVTLPVIRVIQYTMLPQFNQGHVAEVLMGGLFKPLSEKITPNINPDEIEFEFFDG
VRDELLSGLTVDEITDVIEEVSSYLAEKMGISPKEFEALLIDSSKPENKLAKQVYPLAQVQAEVLEKLGGSYAYFANQIR
ASNTGSTNEIKDLIEFETEIEIATIVFEEETKEVEIELQEWSFETPTVNRLGKIVERTIHKAFYFTQSLPDNVSLEMVAI
PSGTFTMGSPKSEEGSYDDERPQHDVTVPSFFMGKYPVTQGQWRAIASRTDLKEKEDLNPDPSRFKKPYKGIDRWQRPVE
TVSWYKAVEFCKRLSKLTGKKYRLPSEAEWEYACRAGTTTPFYFGETITPELVNYDGNITYGDGPKGEYKKQTTPVGQFP
ANAFGLYDMHGNVWEWCADDSHDNYVGAPTDGSAWVDSNEDSSTDSYTRLRGGSWCNSPIDCRSAVRSGYLRRDVHVSYD
GFRLVCDGGRTL

Sequences:

>Translated_892_residues
MSISNFIEGLQKANYDPTAREIAEIIWLWVKTLPDGELELLETDKKDAQGSESNNQIYSEKNRRNLKVNIPELPAKTNLD
LYPKAAADKYLPKTDNNKKERYPLQVPDAPAIPNKQELGIALKSLRRKFPSSTEQELNEAKTIDFFVEQKIWMPIKQPTL
TRRWLDLVLVIEVNNSLVIWKQTIKELRKFLQSLGIFRHTETRGLKFNSSQLLHQELLFKLIVRVSPEFILFLILSSQNQ
RIEIFHYDDPQMRPYSPEFIGATSGKTLILLVSDLVSSVWSRPETYTLLQEWGRKGMVNLLQLLPERLWLRTNLGQQKSL
KLNASVRLTSNQNLTIIPSSKKQEISQDGEFKLPVLCLDPNILEEWSKLLMGVGNNQSVGYGIKPDNHRYSNFVQEEITA
TERVERFQEIASPNAVRLAEHLSAVLVTLPVIRVIQYTMLPQFNQGHVAEVLMGGLFKPLSEKITPNINPDEIEFEFFDG
VRDELLSGLTVDEITDVIEEVSSYLAEKMGISPKEFEALLIDSSKPENKLAKQVYPLAQVQAEVLEKLGGSYAYFANQIR
ASNTGSTNEIKDLIEFETEIEIATIVFEEETKEVEIELQEWSFETPTVNRLGKIVERTIHKAFYFTQSLPDNVSLEMVAI
PSGTFTMGSPKSEEGSYDDERPQHDVTVPSFFMGKYPVTQGQWRAIASRTDLKEKEDLNPDPSRFKKPYKGIDRWQRPVE
TVSWYKAVEFCKRLSKLTGKKYRLPSEAEWEYACRAGTTTPFYFGETITPELVNYDGNITYGDGPKGEYKKQTTPVGQFP
ANAFGLYDMHGNVWEWCADDSHDNYVGAPTDGSAWVDSNEDSSTDSYTRLRGGSWCNSPIDCRSAVRSGYLRRDVHVSYD
GFRLVCDGGRTL
>Mature_891_residues
SISNFIEGLQKANYDPTAREIAEIIWLWVKTLPDGELELLETDKKDAQGSESNNQIYSEKNRRNLKVNIPELPAKTNLDL
YPKAAADKYLPKTDNNKKERYPLQVPDAPAIPNKQELGIALKSLRRKFPSSTEQELNEAKTIDFFVEQKIWMPIKQPTLT
RRWLDLVLVIEVNNSLVIWKQTIKELRKFLQSLGIFRHTETRGLKFNSSQLLHQELLFKLIVRVSPEFILFLILSSQNQR
IEIFHYDDPQMRPYSPEFIGATSGKTLILLVSDLVSSVWSRPETYTLLQEWGRKGMVNLLQLLPERLWLRTNLGQQKSLK
LNASVRLTSNQNLTIIPSSKKQEISQDGEFKLPVLCLDPNILEEWSKLLMGVGNNQSVGYGIKPDNHRYSNFVQEEITAT
ERVERFQEIASPNAVRLAEHLSAVLVTLPVIRVIQYTMLPQFNQGHVAEVLMGGLFKPLSEKITPNINPDEIEFEFFDGV
RDELLSGLTVDEITDVIEEVSSYLAEKMGISPKEFEALLIDSSKPENKLAKQVYPLAQVQAEVLEKLGGSYAYFANQIRA
SNTGSTNEIKDLIEFETEIEIATIVFEEETKEVEIELQEWSFETPTVNRLGKIVERTIHKAFYFTQSLPDNVSLEMVAIP
SGTFTMGSPKSEEGSYDDERPQHDVTVPSFFMGKYPVTQGQWRAIASRTDLKEKEDLNPDPSRFKKPYKGIDRWQRPVET
VSWYKAVEFCKRLSKLTGKKYRLPSEAEWEYACRAGTTTPFYFGETITPELVNYDGNITYGDGPKGEYKKQTTPVGQFPA
NAFGLYDMHGNVWEWCADDSHDNYVGAPTDGSAWVDSNEDSSTDSYTRLRGGSWCNSPIDCRSAVRSGYLRRDVHVSYDG
FRLVCDGGRTL

Specific function: Together with the serine/threonine kinase pknD, may play a role in the specific interactions with host proteins during intracellular growth [H]

COG id: COG1262

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 protein kinase domain [H]

Homologues:

Organism=Homo sapiens, GI257470975, Length=204, Percent_Identity=35.2941176470588, Blast_Score=93, Evalue=1e-18,
Organism=Homo sapiens, GI257470977, Length=226, Percent_Identity=33.6283185840708, Blast_Score=89, Evalue=3e-17,
Organism=Homo sapiens, GI38202250, Length=226, Percent_Identity=33.6283185840708, Blast_Score=88, Evalue=4e-17,
Organism=Homo sapiens, GI194248087, Length=243, Percent_Identity=30.8641975308642, Blast_Score=86, Evalue=1e-16,
Organism=Homo sapiens, GI194248088, Length=306, Percent_Identity=29.0849673202614, Blast_Score=80, Evalue=7e-15,
Organism=Homo sapiens, GI226437577, Length=145, Percent_Identity=36.551724137931, Blast_Score=76, Evalue=2e-13,
Organism=Drosophila melanogaster, GI20130397, Length=224, Percent_Identity=31.25, Blast_Score=83, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016187
- InterPro:   IPR011009
- InterPro:   IPR000719
- InterPro:   IPR017442
- InterPro:   IPR005532 [H]

Pfam domain/function: PF03781 DUF323; PF00069 Pkinase [H]

EC number: =2.7.11.1 [H]

Molecular weight: Translated: 101740; Mature: 101609

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISNFIEGLQKANYDPTAREIAEIIWLWVKTLPDGELELLETDKKDAQGSESNNQIYSE
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHCC
KNRRNLKVNIPELPAKTNLDLYPKAAADKYLPKTDNNKKERYPLQVPDAPAIPNKQELGI
CCCCCEEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
ALKSLRRKFPSSTEQELNEAKTIDFFVEQKIWMPIKQPTLTRRWLDLVLVIEVNNSLVIW
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHEEEEEEEEECCCEEEH
KQTIKELRKFLQSLGIFRHTETRGLKFNSSQLLHQELLFKLIVRVSPEFILFLILSSQNQ
HHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
RIEIFHYDDPQMRPYSPEFIGATSGKTLILLVSDLVSSVWSRPETYTLLQEWGRKGMVNL
EEEEEECCCCCCCCCCCCEEECCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
LQLLPERLWLRTNLGQQKSLKLNASVRLTSNQNLTIIPSSKKQEISQDGEFKLPVLCLDP
HHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCEEEEECCHHHHHCCCCCEEEEEEEECC
NILEEWSKLLMGVGNNQSVGYGIKPDNHRYSNFVQEEITATERVERFQEIASPNAVRLAE
HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
HLSAVLVTLPVIRVIQYTMLPQFNQGHVAEVLMGGLFKPLSEKITPNINPDEIEFEFFDG
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHH
VRDELLSGLTVDEITDVIEEVSSYLAEKMGISPKEFEALLIDSSKPENKLAKQVYPLAQV
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCCCHHHHHHHHHHHHHH
QAEVLEKLGGSYAYFANQIRASNTGSTNEIKDLIEFETEIEIATIVFEEETKEVEIELQE
HHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEEECCCCEEEEEEEC
WSFETPTVNRLGKIVERTIHKAFYFTQSLPDNVSLEMVAIPSGTFTMGSPKSEEGSYDDE
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEECCCCCCCCCCCCCC
RPQHDVTVPSFFMGKYPVTQGQWRAIASRTDLKEKEDLNPDPSRFKKPYKGIDRWQRPVE
CCCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCHHHCCCCCHHHHHCHHHHHHHHHHHHH
TVSWYKAVEFCKRLSKLTGKKYRLPSEAEWEYACRAGTTTPFYFGETITPELVNYDGNIT
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCEECCCCCCHHHCCCCCEEE
YGDGPKGEYKKQTTPVGQFPANAFGLYDMHGNVWEWCADDSHDNYVGAPTDGSAWVDSNE
ECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCEECCCCCCCCCCCCCC
DSSTDSYTRLRGGSWCNSPIDCRSAVRSGYLRRDVHVSYDGFRLVCDGGRTL
CCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCEECEEEECCCEEEEECCCCCC
>Mature Secondary Structure 
SISNFIEGLQKANYDPTAREIAEIIWLWVKTLPDGELELLETDKKDAQGSESNNQIYSE
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHCC
KNRRNLKVNIPELPAKTNLDLYPKAAADKYLPKTDNNKKERYPLQVPDAPAIPNKQELGI
CCCCCEEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
ALKSLRRKFPSSTEQELNEAKTIDFFVEQKIWMPIKQPTLTRRWLDLVLVIEVNNSLVIW
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHEEEEEEEEECCCEEEH
KQTIKELRKFLQSLGIFRHTETRGLKFNSSQLLHQELLFKLIVRVSPEFILFLILSSQNQ
HHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
RIEIFHYDDPQMRPYSPEFIGATSGKTLILLVSDLVSSVWSRPETYTLLQEWGRKGMVNL
EEEEEECCCCCCCCCCCCEEECCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
LQLLPERLWLRTNLGQQKSLKLNASVRLTSNQNLTIIPSSKKQEISQDGEFKLPVLCLDP
HHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCEEEEECCHHHHHCCCCCEEEEEEEECC
NILEEWSKLLMGVGNNQSVGYGIKPDNHRYSNFVQEEITATERVERFQEIASPNAVRLAE
HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
HLSAVLVTLPVIRVIQYTMLPQFNQGHVAEVLMGGLFKPLSEKITPNINPDEIEFEFFDG
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHH
VRDELLSGLTVDEITDVIEEVSSYLAEKMGISPKEFEALLIDSSKPENKLAKQVYPLAQV
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCCCHHHHHHHHHHHHHH
QAEVLEKLGGSYAYFANQIRASNTGSTNEIKDLIEFETEIEIATIVFEEETKEVEIELQE
HHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEEECCCCEEEEEEEC
WSFETPTVNRLGKIVERTIHKAFYFTQSLPDNVSLEMVAIPSGTFTMGSPKSEEGSYDDE
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEECCCCCCCCCCCCCC
RPQHDVTVPSFFMGKYPVTQGQWRAIASRTDLKEKEDLNPDPSRFKKPYKGIDRWQRPVE
CCCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCHHHCCCCCHHHHHCHHHHHHHHHHHHH
TVSWYKAVEFCKRLSKLTGKKYRLPSEAEWEYACRAGTTTPFYFGETITPELVNYDGNIT
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCEECCCCCCHHHCCCCCEEE
YGDGPKGEYKKQTTPVGQFPANAFGLYDMHGNVWEWCADDSHDNYVGAPTDGSAWVDSNE
ECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCEECCCCCCCCCCCCCC
DSSTDSYTRLRGGSWCNSPIDCRSAVRSGYLRRDVHVSYDGFRLVCDGGRTL
CCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCEECEEEECCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10684935 [H]