| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475646
Identifier: 113475646
GI number: 113475646
Start: 3092206
End: 3092802
Strand: Reverse
Name: 113475646
Synonym: Tery_1983
Alternate gene names: NA
Gene position: 3092802-3092206 (Counterclockwise)
Preceding gene: 113475647
Following gene: 113475645
Centisome position: 39.91
GC content: 29.31
Gene sequence:
>597_bases ATGTCTTATAGTAAATTCAGCTTAGAGCAATTACTAACAAACTTTAATCTAAATTTAGTCGAATTTCAGGGAAAATTTAA CAACTATCCTGAAATTTTTCCCAGTAAAATAATACAAGAACTTTTGAAAGAATATATACCTTTAGCAGTTGCTATCGGTT CAGAAAAAGCTCGTTCAGAATTAATTTTAGCGCCCATTTTAGTGGATATAAAGAAACAGCTAAATAATCAAATTAGCATT TTTTCAGGAATAGAATTTAATGTTAATCCTGACCAAGGTTTAAACGGTTTTTGTGATTTTATTATTAGCCGTTCTACTAG ACAACTTATTATTGAAGCACCAGTTATTACTTTAGTAGAAGCAAAAAACGATAATCTTAAGTCTGGATTTTCCCAATGCA TTGCAGAAATGCTAGCAGCTCAACTTTTTAATAAAAGAAAAGGCAACAATATTAATAAAGTTTATGGTGTTGTCACCACA GGAACGGTTTGGCAATTTTTAGAGCTAGAGTCTGAAACTATAATTGTAGACTTAGAAGAATATTCTCTCAATAATTTATC AAAAATTTTCGGCATTTTAATTAGTTTAGTTAGTTAG
Upstream 100 bases:
>100_bases TTGGTAGTAAGATGTTATCAATTTATTAATTTTTAGACCTGAAACCTAAAAGCTGAAACCTAAAACCTAACACCTGAAAC CTGAAACCTGAAATAAACAA
Downstream 100 bases:
>100_bases CTGAAGTCACTATTTTGCCTGATGTTCAATCTGGCATAATTTGTATAATTAGATGGTTAATTGGGAGTTAGGAGGAAAGA GTATTCAGGAATATTTGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 198; Mature: 197
Protein sequence:
>198_residues MSYSKFSLEQLLTNFNLNLVEFQGKFNNYPEIFPSKIIQELLKEYIPLAVAIGSEKARSELILAPILVDIKKQLNNQISI FSGIEFNVNPDQGLNGFCDFIISRSTRQLIIEAPVITLVEAKNDNLKSGFSQCIAEMLAAQLFNKRKGNNINKVYGVVTT GTVWQFLELESETIIVDLEEYSLNNLSKIFGILISLVS
Sequences:
>Translated_198_residues MSYSKFSLEQLLTNFNLNLVEFQGKFNNYPEIFPSKIIQELLKEYIPLAVAIGSEKARSELILAPILVDIKKQLNNQISI FSGIEFNVNPDQGLNGFCDFIISRSTRQLIIEAPVITLVEAKNDNLKSGFSQCIAEMLAAQLFNKRKGNNINKVYGVVTT GTVWQFLELESETIIVDLEEYSLNNLSKIFGILISLVS >Mature_197_residues SYSKFSLEQLLTNFNLNLVEFQGKFNNYPEIFPSKIIQELLKEYIPLAVAIGSEKARSELILAPILVDIKKQLNNQISIF SGIEFNVNPDQGLNGFCDFIISRSTRQLIIEAPVITLVEAKNDNLKSGFSQCIAEMLAAQLFNKRKGNNINKVYGVVTTG TVWQFLELESETIIVDLEEYSLNNLSKIFGILISLVS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22272; Mature: 22141
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYSKFSLEQLLTNFNLNLVEFQGKFNNYPEIFPSKIIQELLKEYIPLAVAIGSEKARSE CCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCHHHHH LILAPILVDIKKQLNNQISIFSGIEFNVNPDQGLNGFCDFIISRSTRQLIIEAPVITLVE HHHHHHHHHHHHHHCCCEEEEECEEECCCCCCCCHHHHHHHHCCCCHHEEEECCEEEEEE AKNDNLKSGFSQCIAEMLAAQLFNKRKGNNINKVYGVVTTGTVWQFLELESETIIVDLEE CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEEEHHHHHHHHCCCCCEEEEEEHH YSLNNLSKIFGILISLVS HCHHHHHHHHHHHHHHCC >Mature Secondary Structure SYSKFSLEQLLTNFNLNLVEFQGKFNNYPEIFPSKIIQELLKEYIPLAVAIGSEKARSE CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCHHHHH LILAPILVDIKKQLNNQISIFSGIEFNVNPDQGLNGFCDFIISRSTRQLIIEAPVITLVE HHHHHHHHHHHHHHCCCEEEEECEEECCCCCCCCHHHHHHHHCCCCHHEEEECCEEEEEE AKNDNLKSGFSQCIAEMLAAQLFNKRKGNNINKVYGVVTTGTVWQFLELESETIIVDLEE CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEEEHHHHHHHHCCCCCEEEEEEHH YSLNNLSKIFGILISLVS HCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA