Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113475640
Identifier: 113475640
GI number: 113475640
Start: 3082333
End: 3083421
Strand: Reverse
Name: 113475640
Synonym: Tery_1977
Alternate gene names: NA
Gene position: 3083421-3082333 (Counterclockwise)
Preceding gene: 113475641
Following gene: 113475639
Centisome position: 39.79
GC content: 40.13
Gene sequence:
>1089_bases ATGAGAACCTACCTTTACATATCATCAGGAATCGCATCCGCCCTCACCGGGTGGATCCTTGGTCATGTTATCATTAGCGA CCTTCAATGGTTAAAAAACATCCCCGAACTAGGCCTATTTCCCTGCGTGGCAATTTTCCTGGCAATAGGCATAGTCGCCA TAGATCTTTTTCTCAGCAACCCCACCAGATTCCAACGTAACTTAAAAACAGGTTTTATCCCCTTAACAATTGCTGCCGGA CTTGGTTTATTGATCGGCACTACCTCTGGAGGTATAGTACAACTTTGGCTCCACCCTCAACTGCGGGATCATGTTTTTCA AGTACCAGACTTTTTTGTTAGAATAATAGGGTGGGTTTTAATTGGAGTAGCAGTAGGTCTAGGAGAAGGATTAACTTGGC GATGGCGTAGCATAGAAGCAGGAGATTCTCGCCGTTATCAACAGCGTTTCTGGACTAGTTTTATTGCTAGTAGTTTGACC GCCTTAGCTGCAGCATTAATATTTGAAAAGTTGCGACAAAACTTTGGAGGTGAAATTCCAGAAGCATTAAAAGCTTGGGA AGAACCTATAGGATTTTCTTTTTTGGGAGGTTTGTTAGGTTTAGTCTTAAGTTTTTCCACCTCTCCCAGTCACACGATCG CTCTCAGAGCAGGTGCCGGTTTTGAGTATCTTTATGGTTCGTCGCTGCTAACTCAAACTACTAATTATCCCCACATCGAA AAGACAAAAAAACCCCCATTAAAATTTGTTAGCGATGATTATGCCGATCGAATTGAAGAGGGATTATCTATTCAATTACC CGCCAGAGGAAAAATAAAAATTGGTTCTGGACAAGACGTACATATTTATCTTCCAGAATTGCCAGAAAATGTGGCCGAAC TAAAGTTAAAACCCGGTCAAACTTTATTATTTCCCCAACCTAAATTTTATGGAATAATAGAGTATAGAGGTCTACGTTTA ACAACCCCAGGGCCGATTAAATTAAAACATAATGATATGATTACATTTCATGTTCCACAGGGAAATTATAATGATCAAAA ACTTTTTAGATTTATTTACTACAATCGCTTTTTGGACCCCCAAGGTTAG
Upstream 100 bases:
>100_bases ATATCAGAGGTTAAAACAAGATATCCAAAGACAATTGCTAGAATAGCGATCGCTAATTCCAAACAATAGTTCCCAATAAA CTCACCCTTAAAAAATAAAC
Downstream 100 bases:
>100_bases TCTATCTTTGCTATTATTGTTTTCTGGGAGTCATCCTAGTTTTGCTCAAGTCGAAAGAGTAGAAATTATTCAAGCAAAAC CAGATAAAGATGACGGGAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 362; Mature: 362
Protein sequence:
>362_residues MRTYLYISSGIASALTGWILGHVIISDLQWLKNIPELGLFPCVAIFLAIGIVAIDLFLSNPTRFQRNLKTGFIPLTIAAG LGLLIGTTSGGIVQLWLHPQLRDHVFQVPDFFVRIIGWVLIGVAVGLGEGLTWRWRSIEAGDSRRYQQRFWTSFIASSLT ALAAALIFEKLRQNFGGEIPEALKAWEEPIGFSFLGGLLGLVLSFSTSPSHTIALRAGAGFEYLYGSSLLTQTTNYPHIE KTKKPPLKFVSDDYADRIEEGLSIQLPARGKIKIGSGQDVHIYLPELPENVAELKLKPGQTLLFPQPKFYGIIEYRGLRL TTPGPIKLKHNDMITFHVPQGNYNDQKLFRFIYYNRFLDPQG
Sequences:
>Translated_362_residues MRTYLYISSGIASALTGWILGHVIISDLQWLKNIPELGLFPCVAIFLAIGIVAIDLFLSNPTRFQRNLKTGFIPLTIAAG LGLLIGTTSGGIVQLWLHPQLRDHVFQVPDFFVRIIGWVLIGVAVGLGEGLTWRWRSIEAGDSRRYQQRFWTSFIASSLT ALAAALIFEKLRQNFGGEIPEALKAWEEPIGFSFLGGLLGLVLSFSTSPSHTIALRAGAGFEYLYGSSLLTQTTNYPHIE KTKKPPLKFVSDDYADRIEEGLSIQLPARGKIKIGSGQDVHIYLPELPENVAELKLKPGQTLLFPQPKFYGIIEYRGLRL TTPGPIKLKHNDMITFHVPQGNYNDQKLFRFIYYNRFLDPQG >Mature_362_residues MRTYLYISSGIASALTGWILGHVIISDLQWLKNIPELGLFPCVAIFLAIGIVAIDLFLSNPTRFQRNLKTGFIPLTIAAG LGLLIGTTSGGIVQLWLHPQLRDHVFQVPDFFVRIIGWVLIGVAVGLGEGLTWRWRSIEAGDSRRYQQRFWTSFIASSLT ALAAALIFEKLRQNFGGEIPEALKAWEEPIGFSFLGGLLGLVLSFSTSPSHTIALRAGAGFEYLYGSSLLTQTTNYPHIE KTKKPPLKFVSDDYADRIEEGLSIQLPARGKIKIGSGQDVHIYLPELPENVAELKLKPGQTLLFPQPKFYGIIEYRGLRL TTPGPIKLKHNDMITFHVPQGNYNDQKLFRFIYYNRFLDPQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40462; Mature: 40462
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTYLYISSGIASALTGWILGHVIISDLQWLKNIPELGLFPCVAIFLAIGIVAIDLFLSN CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC PTRFQRNLKTGFIPLTIAAGLGLLIGTTSGGIVQLWLHPQLRDHVFQVPDFFVRIIGWVL CHHHHHHHCCCCCHHHHHCCCCEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH IGVAVGLGEGLTWRWRSIEAGDSRRYQQRFWTSFIASSLTALAAALIFEKLRQNFGGEIP HHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH EALKAWEEPIGFSFLGGLLGLVLSFSTSPSHTIALRAGAGFEYLYGSSLLTQTTNYPHIE HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHCCHHHHCCCCCCCCC KTKKPPLKFVSDDYADRIEEGLSIQLPARGKIKIGSGQDVHIYLPELPENVAELKLKPGQ CCCCCCCHHHCCHHHHHHHCCCEEEECCCCEEEECCCCEEEEECCCCCCCHHHEEECCCC TLLFPQPKFYGIIEYRGLRLTTPGPIKLKHNDMITFHVPQGNYNDQKLFRFIYYNRFLDP EEECCCCCEEEEEEECCEEECCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHCCC QG CC >Mature Secondary Structure MRTYLYISSGIASALTGWILGHVIISDLQWLKNIPELGLFPCVAIFLAIGIVAIDLFLSN CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC PTRFQRNLKTGFIPLTIAAGLGLLIGTTSGGIVQLWLHPQLRDHVFQVPDFFVRIIGWVL CHHHHHHHCCCCCHHHHHCCCCEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH IGVAVGLGEGLTWRWRSIEAGDSRRYQQRFWTSFIASSLTALAAALIFEKLRQNFGGEIP HHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH EALKAWEEPIGFSFLGGLLGLVLSFSTSPSHTIALRAGAGFEYLYGSSLLTQTTNYPHIE HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHCCHHHHCCCCCCCCC KTKKPPLKFVSDDYADRIEEGLSIQLPARGKIKIGSGQDVHIYLPELPENVAELKLKPGQ CCCCCCCHHHCCHHHHHHHCCCEEEECCCCEEEECCCCEEEEECCCCCCCHHHEEECCCC TLLFPQPKFYGIIEYRGLRLTTPGPIKLKHNDMITFHVPQGNYNDQKLFRFIYYNRFLDP EEECCCCCEEEEEEECCEEECCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHCCC QG CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA