Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113475639

Identifier: 113475639

GI number: 113475639

Start: 3080946

End: 3082325

Strand: Reverse

Name: 113475639

Synonym: Tery_1976

Alternate gene names: NA

Gene position: 3082325-3080946 (Counterclockwise)

Preceding gene: 113475640

Following gene: 113475638

Centisome position: 39.77

GC content: 38.48

Gene sequence:

>1380_bases
TTGCTATTATTGTTTTCTGGGAGTCATCCTAGTTTTGCTCAAGTCGAAAGAGTAGAAATTATTCAAGCAAAACCAGATAA
AGATGACGGGAGTGTAGCCTTACGCTTTCAAGCATTTGATCGCAATAATAAAGCCGTAATGCGATTACCAGAAAAAAGTA
TTACTTTGAGAGTTTGTTCCCAAGACCAAGAGTGCCAAGAACTAGGATTAGGTAATAAAAAATGGACAACCCCTGCCCCA
GAAAAACTACCTCCAGCTTGGGTAATTGTCTTATTAGATTTTAGCGGTAGCATGAAGCGATGCGAGGAAAGGGGTAGTTG
GGATGAAAGATCTTCTCAATGCTCAGGTAAAAGTAAATTAAAGGGAGCCATTGAAGCGATTCAAAAATTTAGTAAGGATG
TGGCTGGACGGAGCCAAAAAACTAAAATAGCGATCGTACCTTTTAGTGAAAGTGGGGGAAGTTGTGTGGGAAAAAAAGTC
AGCAGGAAAACACTCAATGAGTTTAAACCAGCAGGAAGTGACGAAATTGAAAATATTCTGAAGGAACTACAAGAAACAGC
TCCAAAAGATATTTGTGGAGCGACAAATATTTACGATCCTTTGATGGCAGCAGTAAGATTTTTAGGGGACGAAAATGAGC
CTCGTTTTAACCCTCCAAAAGCAGATTCGCTGGAAACAACAGATTCAAAAGAACCGGAACCAAGGTTATCAATTATTTTG
CTTTCTGATGGCTATCACAGCATCTATGCAAATTCACAAAAAAGAAAAAGATATCAAACAGAAGCAGAGGCAGAGAGAGA
ACATTTTGAAACCCAACTTATCCCAGCATTAGAAGAAAATTCTCATATTACTGTAAATACTATAGGTTACGGTAAAACCG
CCCAAGAATTAAAGCAAGAGTACAATTTAAAGGATGAGCCCAATATCGAAAATCTATATTTGTTGAAAGATGATTTACCG
GTTGCAGATATAACTAACTACAAAAGATTAAAACAAATTAGCGAAGAATTTGTCGATCAACAGTCCTTGGTCAGAATTGC
TGAAATTACTAGAGGAGTCCACGAATTTTCTGCTAGCGCTAATGATGTGGCTAATGCTTTAACTGACTTCCTCAACGCCA
TGCTTAACGAGTATGAAATTACCTATGTTCAACCAACAAGTTCAGATCGCGGTTCCGCACATAACGTTCAAGTCATCGTT
AAGTCTCCCGATGAGGGCCGTGATATCAAATCTCAACCAGAATCTTACACATTTCCCTGGGTTGGACCAAAGCTACCTGC
AAAAGTGCGGGGGGTTGTATTCTTATTTGTATTAGTAATGGTCATAGTAGGTATTTTTATTCCTTTCTGGTTATTTACAA
AATCTCTGAAACGAGGGTAA

Upstream 100 bases:

>100_bases
ATGATTACATTTCATGTTCCACAGGGAAATTATAATGATCAAAAACTTTTTAGATTTATTTACTACAATCGCTTTTTGGA
CCCCCAAGGTTAGTCTATCT

Downstream 100 bases:

>100_bases
AATCAAGCAAACAAAGGGAAGCAGTTACGGTATAAGGGATTATTAAAAGTTTTTTATTGTATTGAGAGTAAGTAGAAACC
TGGCATGGAAAGTATTTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MLLLFSGSHPSFAQVERVEIIQAKPDKDDGSVALRFQAFDRNNKAVMRLPEKSITLRVCSQDQECQELGLGNKKWTTPAP
EKLPPAWVIVLLDFSGSMKRCEERGSWDERSSQCSGKSKLKGAIEAIQKFSKDVAGRSQKTKIAIVPFSESGGSCVGKKV
SRKTLNEFKPAGSDEIENILKELQETAPKDICGATNIYDPLMAAVRFLGDENEPRFNPPKADSLETTDSKEPEPRLSIIL
LSDGYHSIYANSQKRKRYQTEAEAEREHFETQLIPALEENSHITVNTIGYGKTAQELKQEYNLKDEPNIENLYLLKDDLP
VADITNYKRLKQISEEFVDQQSLVRIAEITRGVHEFSASANDVANALTDFLNAMLNEYEITYVQPTSSDRGSAHNVQVIV
KSPDEGRDIKSQPESYTFPWVGPKLPAKVRGVVFLFVLVMVIVGIFIPFWLFTKSLKRG

Sequences:

>Translated_459_residues
MLLLFSGSHPSFAQVERVEIIQAKPDKDDGSVALRFQAFDRNNKAVMRLPEKSITLRVCSQDQECQELGLGNKKWTTPAP
EKLPPAWVIVLLDFSGSMKRCEERGSWDERSSQCSGKSKLKGAIEAIQKFSKDVAGRSQKTKIAIVPFSESGGSCVGKKV
SRKTLNEFKPAGSDEIENILKELQETAPKDICGATNIYDPLMAAVRFLGDENEPRFNPPKADSLETTDSKEPEPRLSIIL
LSDGYHSIYANSQKRKRYQTEAEAEREHFETQLIPALEENSHITVNTIGYGKTAQELKQEYNLKDEPNIENLYLLKDDLP
VADITNYKRLKQISEEFVDQQSLVRIAEITRGVHEFSASANDVANALTDFLNAMLNEYEITYVQPTSSDRGSAHNVQVIV
KSPDEGRDIKSQPESYTFPWVGPKLPAKVRGVVFLFVLVMVIVGIFIPFWLFTKSLKRG
>Mature_459_residues
MLLLFSGSHPSFAQVERVEIIQAKPDKDDGSVALRFQAFDRNNKAVMRLPEKSITLRVCSQDQECQELGLGNKKWTTPAP
EKLPPAWVIVLLDFSGSMKRCEERGSWDERSSQCSGKSKLKGAIEAIQKFSKDVAGRSQKTKIAIVPFSESGGSCVGKKV
SRKTLNEFKPAGSDEIENILKELQETAPKDICGATNIYDPLMAAVRFLGDENEPRFNPPKADSLETTDSKEPEPRLSIIL
LSDGYHSIYANSQKRKRYQTEAEAEREHFETQLIPALEENSHITVNTIGYGKTAQELKQEYNLKDEPNIENLYLLKDDLP
VADITNYKRLKQISEEFVDQQSLVRIAEITRGVHEFSASANDVANALTDFLNAMLNEYEITYVQPTSSDRGSAHNVQVIV
KSPDEGRDIKSQPESYTFPWVGPKLPAKVRGVVFLFVLVMVIVGIFIPFWLFTKSLKRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51522; Mature: 51522

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS50234 VWFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLLFSGSHPSFAQVERVEIIQAKPDKDDGSVALRFQAFDRNNKAVMRLPEKSITLRVCS
CEEEEECCCCCHHHHHHHHEEECCCCCCCCCEEEEEEEECCCCCEEEECCCCCEEEEECC
QDQECQELGLGNKKWTTPAPEKLPPAWVIVLLDFSGSMKRCEERGSWDERSSQCSGKSKL
CCHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHCCCCCHHHHHCCCHHHH
KGAIEAIQKFSKDVAGRSQKTKIAIVPFSESGGSCVGKKVSRKTLNEFKPAGSDEIENIL
HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
KELQETAPKDICGATNIYDPLMAAVRFLGDENEPRFNPPKADSLETTDSKEPEPRLSIIL
HHHHHHCCHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
LSDGYHSIYANSQKRKRYQTEAEAEREHFETQLIPALEENSHITVNTIGYGKTAQELKQE
EECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEECCCCCHHHHHHHH
YNLKDEPNIENLYLLKDDLPVADITNYKRLKQISEEFVDQQSLVRIAEITRGVHEFSASA
CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCH
NDVANALTDFLNAMLNEYEITYVQPTSSDRGSAHNVQVIVKSPDEGRDIKSQPESYTFPW
HHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
VGPKLPAKVRGVVFLFVLVMVIVGIFIPFWLFTKSLKRG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLLFSGSHPSFAQVERVEIIQAKPDKDDGSVALRFQAFDRNNKAVMRLPEKSITLRVCS
CEEEEECCCCCHHHHHHHHEEECCCCCCCCCEEEEEEEECCCCCEEEECCCCCEEEEECC
QDQECQELGLGNKKWTTPAPEKLPPAWVIVLLDFSGSMKRCEERGSWDERSSQCSGKSKL
CCHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHCCCCCHHHHHCCCHHHH
KGAIEAIQKFSKDVAGRSQKTKIAIVPFSESGGSCVGKKVSRKTLNEFKPAGSDEIENIL
HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
KELQETAPKDICGATNIYDPLMAAVRFLGDENEPRFNPPKADSLETTDSKEPEPRLSIIL
HHHHHHCCHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
LSDGYHSIYANSQKRKRYQTEAEAEREHFETQLIPALEENSHITVNTIGYGKTAQELKQE
EECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEECCCCCHHHHHHHH
YNLKDEPNIENLYLLKDDLPVADITNYKRLKQISEEFVDQQSLVRIAEITRGVHEFSASA
CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCH
NDVANALTDFLNAMLNEYEITYVQPTSSDRGSAHNVQVIVKSPDEGRDIKSQPESYTFPW
HHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
VGPKLPAKVRGVVFLFVLVMVIVGIFIPFWLFTKSLKRG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA