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The map label for this gene is ydcM [C]

Identifier: 113475576

GI number: 113475576

Start: 2957064

End: 2957879

Strand: Reverse

Name: ydcM [C]

Synonym: Tery_1909

Alternate gene names: 113475576

Gene position: 2957879-2957064 (Counterclockwise)

Preceding gene: 113475577

Following gene: 113475575

Centisome position: 38.17

GC content: 35.66

Gene sequence:

>816_bases
ATGGTCCAAAAAGCATACAAATTTAGATTTTATCCAACTCCAGAGCAGGAAATTCTGTTGCTGAGGATTTTGGGTTGTAT
ACACCTCATCTACAACAAAGCTTTAGCAACTAGAACTCAAGCTTGGCATGAACACCCAGAAAGAGTGAGCTATAAACAAA
CTTCAGCTATATTGACTTCTTGGAAAAAACCGGAATATTTAAGTTTTCTCCCTGAAGTAAGCAGTGTAGTATTACAGCAA
AGCTTAAGATATTTAAAAACGGCTTCTAATAACCTTTTTAGTGGACATACTAAATATCCTAATTCCAAGAAAAAAAGAAA
TGTTGGTAGTGCTACGTTTACAAAGTCAGCCTTCAAATGTAAAGATGGTCAAGTCTATTTAGCTAAGTATGCAGAACAAT
TATATATTAGATGGAGCAGGCAATTACTACTAGGTTGTATACCCAGTACGATAGCAATAAGTGATGCTAATTGGGGAGAA
TTAGTGAAGCAATTAGAATACAAAGCTCAATGGTATAGTCGTACATTAATAAAAATTGACAGATATTTTCCTAGTTCTAA
ACGTTACTCTAATTGTATTCATATAGTAGAAAAATTATCTTTAAATATTAGACAATGGGACTGTCCTGAAAGCGCTAGTC
ACCATGATAGTTATCTAAACGCAAGTATAAACATTTTGGCTACCGGACAGGCAGTGTCAGTCTGGGTCGCGACTGTAAGA
CCTGAAGAGAGTAAATCTCGGAGGGCAAGTACGATGAAGCAGAAAGCCCTTAATATTGATGAATTGGGAATTTTCCGCAA
ATGTCTTGTAGGATAA

Upstream 100 bases:

>100_bases
CCCGCGCTCTCCTTTAAGGGAGCTTTGAGATGAAAACCAATCAATGTTGTGTTCTTACAAAAAATATTCTAAAATTTAAA
TATTAAAAGTTAAGCAGTAG

Downstream 100 bases:

>100_bases
GCGTCGGGAGAGTGTCAATCTCCTTACGTCAAATAAATAAGTATACTGAAAATCTATTTTGTACTAAATTAAGCTTATGA
TCAATGCTTTATGGCTAAAA

Product: transposase, IS605 OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MVQKAYKFRFYPTPEQEILLLRILGCIHLIYNKALATRTQAWHEHPERVSYKQTSAILTSWKKPEYLSFLPEVSSVVLQQ
SLRYLKTASNNLFSGHTKYPNSKKKRNVGSATFTKSAFKCKDGQVYLAKYAEQLYIRWSRQLLLGCIPSTIAISDANWGE
LVKQLEYKAQWYSRTLIKIDRYFPSSKRYSNCIHIVEKLSLNIRQWDCPESASHHDSYLNASINILATGQAVSVWVATVR
PEESKSRRASTMKQKALNIDELGIFRKCLVG

Sequences:

>Translated_271_residues
MVQKAYKFRFYPTPEQEILLLRILGCIHLIYNKALATRTQAWHEHPERVSYKQTSAILTSWKKPEYLSFLPEVSSVVLQQ
SLRYLKTASNNLFSGHTKYPNSKKKRNVGSATFTKSAFKCKDGQVYLAKYAEQLYIRWSRQLLLGCIPSTIAISDANWGE
LVKQLEYKAQWYSRTLIKIDRYFPSSKRYSNCIHIVEKLSLNIRQWDCPESASHHDSYLNASINILATGQAVSVWVATVR
PEESKSRRASTMKQKALNIDELGIFRKCLVG
>Mature_271_residues
MVQKAYKFRFYPTPEQEILLLRILGCIHLIYNKALATRTQAWHEHPERVSYKQTSAILTSWKKPEYLSFLPEVSSVVLQQ
SLRYLKTASNNLFSGHTKYPNSKKKRNVGSATFTKSAFKCKDGQVYLAKYAEQLYIRWSRQLLLGCIPSTIAISDANWGE
LVKQLEYKAQWYSRTLIKIDRYFPSSKRYSNCIHIVEKLSLNIRQWDCPESASHHDSYLNASINILATGQAVSVWVATVR
PEESKSRRASTMKQKALNIDELGIFRKCLVG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 31263; Mature: 31263

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQKAYKFRFYPTPEQEILLLRILGCIHLIYNKALATRTQAWHEHPERVSYKQTSAILTS
CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHC
WKKPEYLSFLPEVSSVVLQQSLRYLKTASNNLFSGHTKYPNSKKKRNVGSATFTKSAFKC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHCC
KDGQVYLAKYAEQLYIRWSRQLLLGCIPSTIAISDANWGELVKQLEYKAQWYSRTLIKID
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
RYFPSSKRYSNCIHIVEKLSLNIRQWDCPESASHHDSYLNASINILATGQAVSVWVATVR
HCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHCCEEEEEEECCEEEEEEEEEC
PEESKSRRASTMKQKALNIDELGIFRKCLVG
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MVQKAYKFRFYPTPEQEILLLRILGCIHLIYNKALATRTQAWHEHPERVSYKQTSAILTS
CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHC
WKKPEYLSFLPEVSSVVLQQSLRYLKTASNNLFSGHTKYPNSKKKRNVGSATFTKSAFKC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHCC
KDGQVYLAKYAEQLYIRWSRQLLLGCIPSTIAISDANWGELVKQLEYKAQWYSRTLIKID
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
RYFPSSKRYSNCIHIVEKLSLNIRQWDCPESASHHDSYLNASINILATGQAVSVWVATVR
HCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHCCEEEEEEECCEEEEEEEEEC
PEESKSRRASTMKQKALNIDELGIFRKCLVG
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]