| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475474
Identifier: 113475474
GI number: 113475474
Start: 2753595
End: 2754209
Strand: Reverse
Name: 113475474
Synonym: Tery_1805
Alternate gene names: NA
Gene position: 2754209-2753595 (Counterclockwise)
Preceding gene: 113475475
Following gene: 113475473
Centisome position: 35.54
GC content: 34.15
Gene sequence:
>615_bases ATGTTGAATAATCAACAGATACAAATAGAGTGTAATGAAATATTTACACCAGAACAAATTCTAGAAAATCGTGGCAGAGT AGCCATTTTTATTGATGGATCTAACTTATTTTATGCTGCTTTACAGTTAGGAATTGAGATAGATTATACAAAACTTCTTT GTCGTCTAACTGGAGGTTCTCGTCTTCTACGTTCCTTTTTCTATACGGGAGTAGATCGTACTAATGAAAAACAGCAGGGG TTTTTGCTGTGGATGCGTCGTAATGGTTATCGTGTTATTTCTAAAGACTTAGTACAATTACCTGATGGTTCTAAAAAAGC TAATCTAGATGTAGAAATTGCTGTTGATATGATGGCTTTAGTTGGTTCTTATGATACTGCTATATTAGTCAGTGGAGATG GAGATTTAGCTTATGCTGTAGATGCTGTTAGTTATAGAGGTGTTAGGGTTGAAGTTGTTAGTCTTAGAGCTATGACTAGC GATAGTTTAATTAATGTTTCTGACCGCTATATAGATCTGGAACAAATTAAAGAAGACATCCAAAAAACTTCAAAATCTCC TAGCTATACTTATCGTCCTCTATCAGCGATAGGTTTAATTGATGAACATGATTAA
Upstream 100 bases:
>100_bases AATTGTACCCTTTTCTACTGCATAGCTTTTTTTCTGTTACAAATTATCTCTGATTAAGAATTAATTTTTTTTATTTAATA AAAAACTGAGGTTAAAAACC
Downstream 100 bases:
>100_bases AGATAATATTTGCTTTAGTTTAAATTGGAAAAATCGGCAAATTTTAGAATAGTAATCAATGTAAAAGTAGTGTTAATTTT TCTTGAAATTAGCATATTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 204; Mature: 204
Protein sequence:
>204_residues MLNNQQIQIECNEIFTPEQILENRGRVAIFIDGSNLFYAALQLGIEIDYTKLLCRLTGGSRLLRSFFYTGVDRTNEKQQG FLLWMRRNGYRVISKDLVQLPDGSKKANLDVEIAVDMMALVGSYDTAILVSGDGDLAYAVDAVSYRGVRVEVVSLRAMTS DSLINVSDRYIDLEQIKEDIQKTSKSPSYTYRPLSAIGLIDEHD
Sequences:
>Translated_204_residues MLNNQQIQIECNEIFTPEQILENRGRVAIFIDGSNLFYAALQLGIEIDYTKLLCRLTGGSRLLRSFFYTGVDRTNEKQQG FLLWMRRNGYRVISKDLVQLPDGSKKANLDVEIAVDMMALVGSYDTAILVSGDGDLAYAVDAVSYRGVRVEVVSLRAMTS DSLINVSDRYIDLEQIKEDIQKTSKSPSYTYRPLSAIGLIDEHD >Mature_204_residues MLNNQQIQIECNEIFTPEQILENRGRVAIFIDGSNLFYAALQLGIEIDYTKLLCRLTGGSRLLRSFFYTGVDRTNEKQQG FLLWMRRNGYRVISKDLVQLPDGSKKANLDVEIAVDMMALVGSYDTAILVSGDGDLAYAVDAVSYRGVRVEVVSLRAMTS DSLINVSDRYIDLEQIKEDIQKTSKSPSYTYRPLSAIGLIDEHD
Specific function: Unknown
COG id: COG1432
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22972; Mature: 22972
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNNQQIQIECNEIFTPEQILENRGRVAIFIDGSNLFYAALQLGIEIDYTKLLCRLTGGS CCCCCEEEEEECCCCCHHHHHHCCCCEEEEEECCCCEEEEEHHCCEECHHHEEEEECCCH RLLRSFFYTGVDRTNEKQQGFLLWMRRNGYRVISKDLVQLPDGSKKANLDVEIAVDMMAL HHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEECHHHHCCCCCCCCCCEEEEEHHHHHHH VGSYDTAILVSGDGDLAYAVDAVSYRGVRVEVVSLRAMTSDSLINVSDRYIDLEQIKEDI HCCCCEEEEEECCCCEEEEEECCEECCEEEEEEEEEEECCCCEEECCHHEEEHHHHHHHH QKTSKSPSYTYRPLSAIGLIDEHD HHHCCCCCEEECCHHEEEEEECCC >Mature Secondary Structure MLNNQQIQIECNEIFTPEQILENRGRVAIFIDGSNLFYAALQLGIEIDYTKLLCRLTGGS CCCCCEEEEEECCCCCHHHHHHCCCCEEEEEECCCCEEEEEHHCCEECHHHEEEEECCCH RLLRSFFYTGVDRTNEKQQGFLLWMRRNGYRVISKDLVQLPDGSKKANLDVEIAVDMMAL HHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEECHHHHCCCCCCCCCCEEEEEHHHHHHH VGSYDTAILVSGDGDLAYAVDAVSYRGVRVEVVSLRAMTSDSLINVSDRYIDLEQIKEDI HCCCCEEEEEECCCCEEEEEECCEECCEEEEEEEEEEECCCCEEECCHHEEEHHHHHHHH QKTSKSPSYTYRPLSAIGLIDEHD HHHCCCCCEEECCHHEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA